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Conserved domains on  [gi|1859767438|gb|QKV50474|]
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cytochrome b, partial (mitochondrion) [Syncerus caffer]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-120 2.26e-95

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 278.83  E-value: 2.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-120 2.26e-95

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 278.83  E-value: 2.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 2.05e-57

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 176.02  E-value: 2.05e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:cd00284    16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1859767438  81 YGSY--TFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:cd00284    96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-120 2.77e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 162.94  E-value: 2.77e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1859767438  81 YG--SYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 7.99e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 164.96  E-value: 7.99e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:COG1290    33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1859767438  81 YGSYTF---LeTWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:COG1290   113 YGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-120 2.26e-95

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 278.83  E-value: 2.26e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00100   24 PSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00100  104 YGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGA 143
CYTB MTH00119
cytochrome b; Provisional
 1-120 6.43e-86

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 254.44  E-value: 6.43e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00119   25 PSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00119  105 YGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00131
cytochrome b; Provisional
 1-120 1.24e-85

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 253.81  E-value: 1.24e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00131   24 PSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00131  104 YGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGA 143
CYTB MTH00156
cytochrome b; Provisional
 1-120 9.95e-84

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 248.16  E-value: 9.95e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00156   14 PSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIY 93

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00156   94 YGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGA 133
CYTB MTH00074
cytochrome b; Provisional
 1-120 1.09e-83

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 248.83  E-value: 1.09e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00074   25 PSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00074  105 YGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGA 144
CYTB MTH00191
cytochrome b; Provisional
 1-120 5.14e-81

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 241.74  E-value: 5.14e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00191   21 PSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLY 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00191  101 YGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGA 140
CYTB MTH00145
cytochrome b; Provisional
 1-120 9.89e-76

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 228.64  E-value: 9.89e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00145   25 PVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00145  105 YGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGA 144
CYTB MTH00034
cytochrome b; Validated
 1-120 7.38e-75

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 226.51  E-value: 7.38e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00034   24 PSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLY 103

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00034  104 YGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAA 143
CYTB MTH00016
cytochrome b; Validated
 1-120 2.18e-73

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 222.63  E-value: 2.18e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00016   25 PSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00016  105 YGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00224
cytochrome b; Provisional
 1-120 5.10e-63

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 196.30  E-value: 5.10e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00224   25 PNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00224  105 YGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGA 144
CYTB MTH00022
cytochrome b; Validated
 1-120 1.19e-62

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 195.30  E-value: 1.19e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00022   23 PSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLY 102

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00022  103 YGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGA 142
CYTB MTH00053
cytochrome b; Provisional
 1-120 2.18e-61

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 191.84  E-value: 2.18e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00053   25 PSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIY 104

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00053  105 YGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAA 144
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-120 2.05e-57

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 176.02  E-value: 2.05e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:cd00284    16 PSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLY 95

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1859767438  81 YGSY--TFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:cd00284    96 YGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGA 137
CYTB MTH00033
cytochrome b; Provisional
 1-120 6.66e-53

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 170.12  E-value: 6.66e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00033   21 PSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLY 100

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00033  101 YGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAA 140
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-120 2.77e-52

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 162.94  E-value: 2.77e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:pfam00033   7 PSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLY 86

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 1859767438  81 YG--SYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam00033  87 YGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGA 128
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-120 7.99e-51

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 164.96  E-value: 7.99e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:COG1290    33 PKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFF 112

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 1859767438  81 YGSYTF---LeTWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:COG1290   113 YGAYKKpreL-NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGA 154
CYTB MTH00086
cytochrome b; Provisional
 1-120 1.07e-43

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 145.85  E-value: 1.07e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:MTH00086   13 SKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLF 92

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00086   93 MMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAA 132
CYTB MTH00046
cytochrome b; Validated
 4-120 4.59e-29

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 107.38  E-value: 4.59e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   4 ISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGS 83
Cdd:MTH00046   18 LNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSS 97

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 1859767438  84 YTFLETWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:MTH00046   98 YSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAA 134
PRK03735 PRK03735
cytochrome b6; Provisional
 10-118 6.96e-25

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 93.62  E-value: 6.96e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438  10 FGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLYYGSYTFLE- 88
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110
                  ....*....|....*....|....*....|.
gi 1859767438  89 -TWNIGVILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYF 154
petB CHL00070
cytochrome b6
 1-118 9.68e-18

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 75.14  E-value: 9.68e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1859767438   1 PSNISAWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYMHANGASMFFICLYMHVGRGLY 80
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|
gi 1859767438  81 YGSYTFLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFW 118
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYW 146
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
65-120 1.68e-12

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 60.33  E-value: 1.68e-12
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1859767438  65 SMFFICLYMHVGRGLYYGSYTFLE--TWNIGVILLFTVMATAFMGYVLPWGQMSFWGA 120
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGL 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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