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Conserved domains on  [gi|1883779837|gb|QMT14842|]
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toll-like receptor 4, partial [Melaniparus niger]

Protein Classification

leucine-rich repeat domain-containing protein( domain architecture ID 11469232)

leucine-rich repeat (LRR) domain-containing protein may participate in protein-protein interactions

Gene Ontology:  GO:0005515
PubMed:  11751054|7583641|14747988
SCOP:  4003523

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
66-254 1.41e-14

Leucine-rich repeat (LRR) protein [Transcription];


:

Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 72.66  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  66 IGNVSTVRLVDLGLEEISQVPVR----SKVKHLECKKCSFEDVPArKLSLFKELRVLRITKNKrLKNFRQNFEGLTNLEV 141
Cdd:COG4886   109 LSNLTNLESLDLSGNQLTDLPEElanlTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKE 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 142 IDLSENRLTFSSccsPQFQNCPNLKHLNLSFNSNIRLTGDFANVKNLLYLDLQHTTLfgpGSYPVFLSLQKLIYLDISHT 221
Cdd:COG4886   187 LDLSNNQITDLP---EPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQL---TDLPELGNLTNLEELDLSNN 260

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1883779837 222 KteVKSQCTFCGLNSLQVLKMAGNSFEDNKLAS 254
Cdd:COG4886   261 Q--LTDLPPLANLTNLKTLDLSNNQLTDLKLKE 291
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
66-254 1.41e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 72.66  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  66 IGNVSTVRLVDLGLEEISQVPVR----SKVKHLECKKCSFEDVPArKLSLFKELRVLRITKNKrLKNFRQNFEGLTNLEV 141
Cdd:COG4886   109 LSNLTNLESLDLSGNQLTDLPEElanlTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKE 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 142 IDLSENRLTFSSccsPQFQNCPNLKHLNLSFNSNIRLTGDFANVKNLLYLDLQHTTLfgpGSYPVFLSLQKLIYLDISHT 221
Cdd:COG4886   187 LDLSNNQITDLP---EPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQL---TDLPELGNLTNLEELDLSNN 260

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1883779837 222 KteVKSQCTFCGLNSLQVLKMAGNSFEDNKLAS 254
Cdd:COG4886   261 Q--LTDLPPLANLTNLKTLDLSNNQLTDLKLKE 291
LRR_8 pfam13855
Leucine rich repeat;
114-173 3.70e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.28  E-value: 3.70e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883779837 114 ELRVLRITKNkRLKNFRQ-NFEGLTNLEVIDLSENRLTFSsccSPQ-FQNCPNLKHLNLSFN 173
Cdd:pfam13855   2 NLRSLDLSNN-RLTSLDDgAFKGLSNLKVLDLSNNLLTTL---SPGaFSGLPSLRYLDLSGN 59
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 108-245 1.12e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.38  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 108 KLSLFKELRVL-----RITKNKRLKNFRQ---------------NFEGLTNLEVIDLSENRLTFSSccspQFQNCPNLKH 167
Cdd:cd21340    19 NLSLCKNLKVLylydnKITKIENLEFLTNlthlylqnnqiekieNLENLVNLKKLYLGGNRISVVE----GLENLTNLEE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 168 LNLsfnSNIRLTGD----------FANVKNLLYLDLQHTTLfgpGSYPVFLSLQKLIYLDISHTK-TEVKSQC-TFCGLN 235
Cdd:cd21340    95 LHI---ENQRLPPGekltfdprslAALSNSLRVLNISGNNI---DSLEPLAPLRNLEQLDASNNQiSDLEELLdLLSSWP 168

                         170
                  ....*....|
gi 1883779837 236 SLQVLKMAGN 245
Cdd:cd21340   169 SLRELDLTGN 178
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 109-247 1.83e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 39.45  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 109 LSLFKELRVLRITKNKRLKNFRQNFEGLTNLEVIDLSENRLT----------------------FSSCCSPQFQNCPNLK 166
Cdd:PLN00113  160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVgqiprelgqmkslkwiylgynnLSGEIPYEIGGLTSLN 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 167 HLNLSFNSnirLTGD----FANVKNLLYLDLQHTTLFGPGSYPVFlSLQKLIYLDISHTKTEVKSQCTFCGLNSLQVLKM 242
Cdd:PLN00113  240 HLDLVYNN---LTGPipssLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315


                  ....*
gi 1883779837 243 AGNSF 247
Cdd:PLN00113  316 FSNNF 320
 
Name Accession Description Interval E-value
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
66-254 1.41e-14

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 72.66  E-value: 1.41e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  66 IGNVSTVRLVDLGLEEISQVPVR----SKVKHLECKKCSFEDVPArKLSLFKELRVLRITKNKrLKNFRQNFEGLTNLEV 141
Cdd:COG4886   109 LSNLTNLESLDLSGNQLTDLPEElanlTNLKELDLSNNQLTDLPE-PLGNLTNLKSLDLSNNQ-LTDLPEELGNLTNLKE 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 142 IDLSENRLTFSSccsPQFQNCPNLKHLNLSFNSNIRLTGDFANVKNLLYLDLQHTTLfgpGSYPVFLSLQKLIYLDISHT 221
Cdd:COG4886   187 LDLSNNQITDLP---EPLGNLTNLEELDLSGNQLTDLPEPLANLTNLETLDLSNNQL---TDLPELGNLTNLEELDLSNN 260

                         170       180       190
                  ....*....|....*....|....*....|...
gi 1883779837 222 KteVKSQCTFCGLNSLQVLKMAGNSFEDNKLAS 254
Cdd:COG4886   261 Q--LTDLPPLANLTNLKTLDLSNNQLTDLKLKE 291
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
73-261 3.80e-13

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 68.42  E-value: 3.80e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  73 RLVDLGLEEISQVPVRSKVKHLECKKCSFEDVPARkLSLFKELRVLRITKNKrLKNFRQNFEGLTNLEVIDLSENRLTfs 152
Cdd:COG4886    97 NLTELDLSGNEELSNLTNLESLDLSGNQLTDLPEE-LANLTNLKELDLSNNQ-LTDLPEPLGNLTNLKSLDLSNNQLT-- 172

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 153 sCCSPQFQNCPNLKHLNLSFNSNIRLTGDFANVKNLLYLDLQHTTLfgpGSYPVFLS-LQKLIYLDISHTKteVKSQCTF 231
Cdd:COG4886   173 -DLPEELGNLTNLKELDLSNNQITDLPEPLGNLTNLEELDLSGNQL---TDLPEPLAnLTNLETLDLSNNQ--LTDLPEL 246

                         170       180       190
                  ....*....|....*....|....*....|
gi 1883779837 232 CGLNSLQVLKMAGNSFEDNKLASNFKNLSH 261
Cdd:COG4886   247 GNLTNLEELDLSNNQLTDLPPLANLTNLKT 276
LRR_8 pfam13855
Leucine rich repeat;
114-173 3.70e-06

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 43.28  E-value: 3.70e-06
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1883779837 114 ELRVLRITKNkRLKNFRQ-NFEGLTNLEVIDLSENRLTFSsccSPQ-FQNCPNLKHLNLSFN 173
Cdd:pfam13855   2 NLRSLDLSNN-RLTSLDDgAFKGLSNLKVLDLSNNLLTTL---SPGaFSGLPSLRYLDLSGN 59
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
108-260 2.34e-05

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 44.92  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 108 KLSLFKELRVLRITKNKRLKNFRQNFEGLTNLEVIDLSENRltfssccspQFQNCPNLKHLNLSFNSNIRLTGDFANVKN 187
Cdd:COG4886    67 LLLSLLLLLLLSLLLLSLLLLGLTDLGDLTNLTELDLSGNE---------ELSNLTNLESLDLSGNQLTDLPEELANLTN 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1883779837 188 LLYLDLQHTTLfgpGSYPVFLS-LQKLIYLDISHTK-TEVKSqcTFCGLNSLQVLKMAGNSFEDnkLASNFKNLS 260
Cdd:COG4886   138 LKELDLSNNQL---TDLPEPLGnLTNLKSLDLSNNQlTDLPE--ELGNLTNLKELDLSNNQITD--LPEPLGNLT 205
LRR_8 pfam13855
Leucine rich repeat;
137-196 1.05e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 36.35  E-value: 1.05e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1883779837 137 TNLEVIDLSENRLTfsSCCSPQFQNCPNLKHLNLSFNSNIRLTGD-FANVKNLLYLDLQHT 196
Cdd:pfam13855   1 PNLRSLDLSNNRLT--SLDDGAFKGLSNLKVLDLSNNLLTTLSPGaFSGLPSLRYLDLSGN 59
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 108-245 1.12e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 39.38  E-value: 1.12e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 108 KLSLFKELRVL-----RITKNKRLKNFRQ---------------NFEGLTNLEVIDLSENRLTFSSccspQFQNCPNLKH 167
Cdd:cd21340    19 NLSLCKNLKVLylydnKITKIENLEFLTNlthlylqnnqiekieNLENLVNLKKLYLGGNRISVVE----GLENLTNLEE 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 168 LNLsfnSNIRLTGD----------FANVKNLLYLDLQHTTLfgpGSYPVFLSLQKLIYLDISHTK-TEVKSQC-TFCGLN 235
Cdd:cd21340    95 LHI---ENQRLPPGekltfdprslAALSNSLRVLNISGNNI---DSLEPLAPLRNLEQLDASNNQiSDLEELLdLLSSWP 168

                         170
                  ....*....|
gi 1883779837 236 SLQVLKMAGN 245
Cdd:cd21340   169 SLRELDLTGN 178
LRR_4 pfam12799
Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a ...
 137-184 1.28e-03

Leucine Rich repeats (2 copies); Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains.


Pssm-ID: 463713 [Multi-domain]  Cd Length: 44  Bit Score: 35.68  E-value: 1.28e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 1883779837 137 TNLEVIDLSENRLTFSsccsPQFQNCPNLKHLNLSFNSNIRLTGDFAN 184
Cdd:pfam12799   1 PNLEVLDLSNNQITDI----PPLAKLPNLETLDLSGNNKITDLSDLAN 44
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 109-247 1.83e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 39.45  E-value: 1.83e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 109 LSLFKELRVLRITKNKRLKNFRQNFEGLTNLEVIDLSENRLT----------------------FSSCCSPQFQNCPNLK 166
Cdd:PLN00113  160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVgqiprelgqmkslkwiylgynnLSGEIPYEIGGLTSLN 239

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 167 HLNLSFNSnirLTGD----FANVKNLLYLDLQHTTLFGPGSYPVFlSLQKLIYLDISHTKTEVKSQCTFCGLNSLQVLKM 242
Cdd:PLN00113  240 HLDLVYNN---LTGPipssLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315


                  ....*
gi 1883779837 243 AGNSF 247
Cdd:PLN00113  316 FSNNF 320
PPP1R42 cd21340
protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 ...
 105-173 2.18e-03

protein phosphatase 1 regulatory subunit 42; Protein phosphatase 1 regulatory subunit 42 (PPP1R42), also known as leucine-rich repeat-containing protein 67 (lrrc67) or testis leucine-rich repeat (TLRR) protein, plays a role in centrosome separation. PPP1R42 has been shown to interact with the well-conserved signaling protein phosphatase-1 (PP1) and thereby increasing PP1's activity, which counters centrosome separation. Inhibition of PPP1R42 expression increases the number of centrosomes per cell while its depletion reduces the activity of PP1 leading to activation of NEK2, the kinase responsible for phosphorylation of centrosomal linker proteins promoting centrosome separation.


Pssm-ID: 411060 [Multi-domain]  Cd Length: 220  Bit Score: 38.23  E-value: 2.18e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1883779837 105 PARKLSLFKELRVLRITKNkRLKNFRQnFEGLTNLEVIDLSENRLTFSSCCSPQFQNCPNLKHLNLSFN 173
Cdd:cd21340   112 PRSLAALSNSLRVLNISGN-NIDSLEP-LAPLRNLEQLDASNNQISDLEELLDLLSSWPSLRELDLTGN 178
LRR_8 pfam13855
Leucine rich repeat;
187-247 5.79e-03

Leucine rich repeat;


Pssm-ID: 404697 [Multi-domain]  Cd Length: 61  Bit Score: 34.42  E-value: 5.79e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1883779837 187 NLLYLDLQHTTL--FGPGSypvFLSLQKLIYLDISHTKTEVKSQCTFCGLNSLQVLKMAGNSF 247
Cdd:pfam13855   2 NLRSLDLSNNRLtsLDDGA---FKGLSNLKVLDLSNNLLTTLSPGAFSGLPSLRYLDLSGNRL 61
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 135-247 5.97e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 37.91  E-value: 5.97e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 135 GLTNLEVIDLSENRLTFSSccsPQ--FQNCPNLKHLNLSFNSnirLTGDFAN--VKNLLYLDLQHTTLFG--PGSYPVFL 208
Cdd:PLN00113   91 RLPYIQTINLSNNQLSGPI---PDdiFTTSSSLRYLNLSNNN---FTGSIPRgsIPNLETLDLSNNMLSGeiPNDIGSFS 164

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1883779837 209 SLQkliYLDISHTKTEVKSQCTFCGLNSLQVLKMAGNSF 247
Cdd:PLN00113  165 SLK---VLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL 200
PLN00113 PLN00113
leucine-rich repeat receptor-like protein kinase; Provisional
 89-200 6.58e-03

leucine-rich repeat receptor-like protein kinase; Provisional


Pssm-ID: 215061 [Multi-domain]  Cd Length: 968  Bit Score: 37.91  E-value: 6.58e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  89 SKVKHLECKKCSFEDVPARKLSLFKELRVLRITKNKRLKNFRQNFEGLTNLEVIDLSENRLTFSSCCSpqFQNCPNLKHL 168
Cdd:PLN00113  475 KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS--FSEMPVLSQL 552

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 1883779837 169 NLSFNsniRLTGD----FANVKNLLYLDLQHTTLFG 200
Cdd:PLN00113  553 DLSQN---QLSGEipknLGNVESLVQVNISHNHLHG 585
LRR COG4886
Leucine-rich repeat (LRR) protein [Transcription];
89-261 7.59e-03

Leucine-rich repeat (LRR) protein [Transcription];


Pssm-ID: 443914 [Multi-domain]  Cd Length: 414  Bit Score: 37.22  E-value: 7.59e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837  89 SKVKHLECKKCSFEDVPArKLSLFKELRVLRITKNKrLKNFRqNFEGLTNLEVIDLSENRLTfsscCSPQFQNCPNLKHL 168
Cdd:COG4886   205 TNLEELDLSGNQLTDLPE-PLANLTNLETLDLSNNQ-LTDLP-ELGNLTNLEELDLSNNQLT----DLPPLANLTNLKTL 277

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1883779837 169 NLSFN--SNIRLTGdFANVKNLLYLDLQHTTLFGPGSYPVFLSLQKLIYLDISHTKTEVKSQCTFCGLNSLQVLKMAGNS 246
Cdd:COG4886   278 DLSNNqlTDLKLKE-LELLLGLNSLLLLLLLLNLLELLILLLLLTTLLLLLLLLKGLLVTLTTLALSLSLLALLTLLLLL 356

                         170
                  ....*....|....*
gi 1883779837 247 FEDNKLASNFKNLSH 261
Cdd:COG4886   357 NLLSLLLTLLLTLGL 371
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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