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Conserved domains on  [gi|1896828128|gb|QNJ59954|]
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NADH dehydrogenase subunit 1 (mitochondrion) [Chortophaga viridifasciata]

Protein Classification

NADH dehydrogenase subunit 1( domain architecture ID 10009622)

NADH dehydrogenase subunit 1 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
5-310 3.04e-140

NADH dehydrogenase subunit 1; Provisional


:

Pssm-ID: 177241  Cd Length: 306  Bit Score: 398.37  E-value: 3.04e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828128 245 SL*FLGGDFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
5-310 3.04e-140

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 398.37  E-value: 3.04e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828128 245 SL*FLGGDFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
NADHdh pfam00146
NADH dehydrogenase;
13-302 6.00e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.51  E-value: 6.00e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  13 ILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  93 VVFPYMTYM--CSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGFNMFD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 171 FMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL*FLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828128 251 G------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
4-297 1.32e-89

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.46  E-value: 1.32e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   4 DLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  84 NLMISLFIWVVFPY--MTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 162 LIGGFNMFDFMNYQF-YCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896828128 241 SMLFSL*FLGG--------DFYS----FMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:COG1005   247 SALATTLFLGGwlgpfpilPLGGlpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.14e-42

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 149.85  E-value: 1.14e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  15 LIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMISLFIWVV 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  95 FP----------YMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 245 SL*FLGG-------------DFYSFM--FFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSIL 309
Cdd:NF040610  259 VLLFLGGwnlpgfvtdipvlGIILPTlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGLY 338

                  .
gi 1896828128 310 F 310
Cdd:NF040610  339 L 339
 
Name Accession Description Interval E-value
ND1 MTH00193
NADH dehydrogenase subunit 1; Provisional
5-310 3.04e-140

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177241  Cd Length: 306  Bit Score: 398.37  E-value: 3.04e-140
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00193    1 LMMMLINFLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGFMGILQPFSDAIKLFTKEQTYPLMSNYLLYYFSPVFS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00193   81 LFLSLLIWLIYPYLFNLISFNLGILFFLCCSSLGVYTVMIAGWSSNSKYSLLGSLRSVAQTISYEVSLALILLSFIFLIG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00193  161 SFNLLDFMNYQKYIWFIFFSFPLFLIWFVSCLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLAEYSSILFMSMLF 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828128 245 SL*FLGGDFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00193  241 VLMFLGGDLLSLLFYLKLLFISFLFIWVRGTLPRFRYDKLMYLAWKSFLPLSLNYLLFFFGLKIFL 306
ND1 MTH00225
NADH dehydrogenase subunit 1; Provisional
7-308 1.40e-121

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214465  Cd Length: 305  Bit Score: 350.87  E-value: 1.40e-121
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   7 MFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLM 86
Cdd:MTH00225    2 SFLLKFLIMLICLLLSVAFYTLLERKVLGYIQLRKGPNKVGLMGLPQPFADALKLFTKEQTKPQLSNKLPYYIAPILSLI 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  87 ISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGF 166
Cdd:MTH00225   82 LSLILWSLYPSMFSIYSFKFGILFFLCISSLNVYTILLAGWSSNSKYALLGALRAVAQTISYEVSMALILLSIVFLVLTY 161
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 167 NMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL 246
Cdd:MTH00225  162 NLFDFSYNQKYFWFMFVLFPLFFCWMISMLAETNRAPFDFAEGESELVSGFNIEYSSGGFALIFMAEYGSILFMSMLTSI 241
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1896828128 247 *FLGGDFY--SFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSI 308
Cdd:MTH00225  242 LFFGGFFVtiDLFLILKIMLLAFWFIWVRGVLPRMRYDKLMSLTWKSFLPLSLAYLFMVLIILM 305
ND1 MTH00143
NADH dehydrogenase subunit 1; Provisional
6-307 1.95e-115

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177201  Cd Length: 307  Bit Score: 335.30  E-value: 1.95e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   6 FMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNL 85
Cdd:MTH00143    1 LVSLLSSVFTYLCVLLAVAFFTLLERKGLGYFQIRKGPNKVGLMGLPQPLADAVKLFTKEFVKPTMSNKFPFFLAPCLSL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  86 MISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGG 165
Cdd:MTH00143   81 ILALLLWQLYPSYFSSSYFGWGLLFFLCVSSLNVYGVLLAGWSSNSKYALLGAVRAVAQTISYEVSMSLILLFPLFLSGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 166 FNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFS 245
Cdd:MTH00143  161 FSFIEISESQFSVWLGFLMFPVFLMWFVSCLAETNRAPFDFAEGESELVSGFNVEYGGGGFALLFLAEYANILFMSLLTV 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896828128 246 L*FLGGDF-----YSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLS 307
Cdd:MTH00143  241 VLFFGGSSvlfllGGVVFMFKVLFFAFLFIWVRASYPRFRYDLLMMLCWKSFLPFSLSILVLFVVLV 307
ND1 MTH00111
NADH dehydrogenase subunit 1; Provisional
5-308 2.41e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214422  Cd Length: 323  Bit Score: 302.58  E-value: 2.41e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00111    4 LLLNLINPLLYIIPILIAVAFLTLLERKILGYMQLRKGPNIVGPFGLLQPIADGVKLFIKEPIRPSTSSPILFTLTPILA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00111   84 LLLALTIWTPLPMPFPLADLNLGLLFLLAMSSMAVYSILWSGWASNSKYALMGALRAVAQTISYEVTLGIILLSLILLSG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00111  164 GYTLQTLATTQEPLWLIFSSWPLAMMWYISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAEYANILLMNTLT 243
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896828128 245 SL*FLGGDFYSF---MFFIKLA----FMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSI 308
Cdd:MTH00111  244 TILFLNPSTLNLppeLFTINLMtktlLLTSGFLWIRASYPRFRYDQLMHLLWKQFLPLTLALCLWHTSMPI 314
ND1 MTH00071
NADH dehydrogenase subunit 1; Provisional
5-312 3.23e-102

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214418  Cd Length: 322  Bit Score: 302.31  E-value: 3.23e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00071    4 LISLIINPLLYIIPVLLAVAFLTLVERKVLGYMQLRKGPNIVGPMGLLQPIADGLKLFIKEPIRPSTSSQILFILMPTMA 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00071   84 LTLALIIWTPLPMPNNLSNLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVTLGLILLCLILLTG 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00071  164 GFSLMNFNTTQEFMWLIIPAWPMAAMWFISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILMMNTLS 243
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828128 245 SL*FLGGDFYSFM-------FFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILFIS 312
Cdd:MTH00071  244 TILFLGSTYNHLQpelstmnLMIKASILSMLFLWVRASYPRFRYDQLMHLVWKNFLPITLAMTIFHISLPISTLG 318
ND1 MTH00218
NADH dehydrogenase subunit 1; Provisional
9-310 1.07e-101

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214463  Cd Length: 311  Bit Score: 300.67  E-value: 1.07e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   9 ILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMIS 88
Cdd:MTH00218    5 LINLLLYILPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPIRPSTSSPFLFLLAPILALTLA 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  89 LFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGFNM 168
Cdd:MTH00218   85 LLLWMPLPLPFSLINLNLGVLFILAISSLGVYSILWSGWASNSKYALMGALRAVAQTISYEVSLGLIILSLIILTGGFSL 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 169 FDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL*F 248
Cdd:MTH00218  165 EGFNLTQETIWLLIPEWPLALMWFISTLAETNRAPFDLTEGESELVSGFNVEYSGGPFALFFLAEYMNILFMNTLSVILF 244
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1896828128 249 LGGDFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00218  245 LGTSLTTINLMLKATLLVFLFLWVRASLPRFRYDQLMHLAWKNFLPLSLALLLLHTSLPLSF 306
ND1 MTH00104
NADH dehydrogenase subunit 1; Provisional
7-313 2.00e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177166  Cd Length: 318  Bit Score: 297.69  E-value: 2.00e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   7 MFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLM 86
Cdd:MTH00104    1 MFMINILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLRPLTSSTTMFIIAPILALT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  87 ISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGF 166
Cdd:MTH00104   81 LALTMWIPLPMPYPLINMNLGVLFILAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 167 NMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL 246
Cdd:MTH00104  161 TLSTLITTQEHLWLIFPSWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNALTTI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1896828128 247 *FLGG-------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILFISF 313
Cdd:MTH00104  241 LFLGAfhnpympELYTTNFTIKTLLLTILFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHISLPIMTASI 314
ND1 MTH00195
NADH dehydrogenase subunit 1; Provisional
5-310 2.67e-100

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 214452  Cd Length: 307  Bit Score: 297.04  E-value: 2.67e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00195    1 WMISVIHFLIQIVPVLLAVAFFTLLERKILGYIQLRKGPNKVGPYGLLQPIADAVKLFIKEPVKPSTSSLWLFFFAPVLA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:MTH00195   81 LALALILWVPIPSPFGFSSINLSVLFFLCVSSLSVYSILGSGWASNSKYALLGAIRAVAQTISYEVSMGLIILCPICLAG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00195  161 SFDFTIMVISQGFSWVILLCPPISFMWYVSTLAETNRAPFDFAEGESELVSGFNVEYAGGPFALIFMAEYSNIIFMSVLT 240
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828128 245 SL*FLGGDfYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00195  241 TILFLGGG-GTIIVALKSLFLSFCFLWVRGSLPRFRYDQLMHLTWKCYLPLILSLLIPLAAIPFAL 305
ND1 MTH00134
NADH dehydrogenase subunit 1; Provisional
1-310 4.58e-98

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177192  Cd Length: 324  Bit Score: 291.90  E-value: 4.58e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   1 MFYDLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLS 80
Cdd:MTH00134    1 MLSTLITHIINPLAYIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLAT 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  81 PIFNLMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00134   81 PMLALTLALTLWAPMPMPYPVTDLNLGILFILALSSLAVYSILGSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVI 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 161 ILIGGFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FM 240
Cdd:MTH00134  161 IFTGGFTLQTFNTAQESIWLLLPAWPLAAMWYISTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAEYANILLM 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896828128 241 SMLFSL*FLGGDFY-------SFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00134  241 NTLSAILFLGASHIptlpeltTINLMTKAALLSVVFLWVRASYPRFRYDQLMHLVWKNFLPLTLALVIWHLALPIAF 317
ND1 MTH00040
NADH dehydrogenase subunit 1; Validated
3-310 1.21e-96

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 214409  Cd Length: 323  Bit Score: 288.41  E-value: 1.21e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   3 YDLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPI 82
Cdd:MTH00040    1 MSVILFLINLLSFIVPVLLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPFADGLKLFIKETLKPSNASPYLFFFSPV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  83 FNLMISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00040   81 LFLFLALLLWSLIPVPTPTLNVNLSLLLVLGLSSLSVYALLGSGWASNSKYSLLGAIRAVAQTISYEISLGLILLSLVIF 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 163 IGGFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSM 242
Cdd:MTH00040  161 SGSFSLSSISNSQNGSWLLFPCLPLFYIWFISTLAETNRAPFDLTEGESELVSGYNVEYAGGPFALFFIAEYANIIFMNL 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828128 243 LFSL*FLGGDFYSFMFF--------IKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00040  241 LSVILFLGGGSPFNEIFpiniiivgIKTTFLVFLFLWVRASYPRFRYDQLMFLTWKNYLPLSIGLLIFYLLLLSLL 316
NADHdh pfam00146
NADH dehydrogenase;
13-302 6.00e-94

NADH dehydrogenase;


Pssm-ID: 459690  Cd Length: 302  Bit Score: 280.51  E-value: 6.00e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  13 ILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMISLFIW 92
Cdd:pfam00146   3 LLLLVPLLLAVAFLTWAERKVLARMQRRIGPNRVGPFGLLQPFADALKLLFKEDIIPAGADKFLFLLAPIIAFIPALLAF 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  93 VVFPYMTYM--CSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGFNMFD 170
Cdd:pfam00146  83 AVIPFGPGLvlADLNVGILYILALSSLGVYGILLAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLLAGSLSLSE 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 171 FMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL*FLG 250
Cdd:pfam00146 163 IVEAQAGGWFIPLQPLAFIVFFIAALAETNRAPFDLPEAESELVAGFHTEYSGMRFALFFLAEYANMFLMSALAVTLFLG 242
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828128 251 G------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFF 302
Cdd:pfam00146 243 GwlgpfpLPGLLWFLLKVFFVFFLFIWIRATLPRFRYDQLMRLGWKVLLPLSLANLLL 300
NuoH COG1005
NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH: ...
4-297 1.32e-89

NADH:ubiquinone oxidoreductase subunit 1 (chain H) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 1 (chain H) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440629  Cd Length: 329  Bit Score: 270.46  E-value: 1.32e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   4 DLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIF 83
Cdd:COG1005     7 PLLITLIKALVILVFLLLLAAYLTWAERKVLARMQDRIGPNRVGPFGLLQPLADGLKLLFKEDIIPAGADKFLFLLAPIL 86
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  84 NLMISLFIWVVFPY--MTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLII 161
Cdd:COG1005    87 AFIPALLAFAVIPFgpGLVLADLNVGLLYVLAVSSLGVYGIILAGWASNNKYSLLGALRAAAQMISYEIPLGLSLLGVVL 166
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 162 LIGGFNMFDFMNYQF-YCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FM 240
Cdd:COG1005   167 LAGSLNLSEIVEAQAgGLWFILPQPLAFVVFFIAALAETNRAPFDLPEAESELVAGYHTEYSGMKFALFFLAEYANMFLV 246
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1896828128 241 SMLFSL*FLGG--------DFYS----FMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:COG1005   247 SALATTLFLGGwlgpfpilPLGGlpgiLWFLLKTLFFIFFFIWVRATLPRYRYDQLMRLGWKVLLPLSL 315
ND1 MTH00010
NADH dehydrogenase subunit 1; Validated
8-311 1.27e-88

NADH dehydrogenase subunit 1; Validated


Pssm-ID: 164586  Cd Length: 311  Bit Score: 267.42  E-value: 1.27e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   8 FILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMI 87
Cdd:MTH00010    5 FFISILLSYVMALLAMAFYTLLERKALGYFQLRKGPNKVGLAGIPQPFADAIKLFTKEQTKPSPANITPFLGAPMMSLIL 84
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  88 SLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGFN 167
Cdd:MTH00010   85 ALLLWSLYPHKHPSFFLKFSILLFLCVSSMNVYTTLGAGWTSNSKYALLGALRSVAQTISYEVSMSLILLSALLILQTFS 164
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 168 MFDFMNYQfYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL* 247
Cdd:MTH00010  165 FSKIIMSQ-YSWILLMIIPLTVSWFITNLAETNRTPFDFAEGESELVSGFNVEYSSGLFALIFMAEYANILIMSLFTSVF 243
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828128 248 FLGGDFYSF----MFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILFI 311
Cdd:MTH00010  244 FTSFIPSIFisdlMLILKTVFLAFLFIWIRATFPRMRYDRLMNLTWKSFLPMSLTSLMISIPIMFLLL 311
ND1 MTH00054
NADH dehydrogenase subunit 1; Provisional
5-310 3.29e-84

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177127  Cd Length: 324  Bit Score: 256.58  E-value: 3.29e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:MTH00054    1 MGIIIIKILAILVPLLISIAYLTLAERKVLGYIQCRKGPNVVGVYGLLQPLADGLKLFTKEIIIPNHANIFIYIMAPILS 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMT--YMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:MTH00054   81 LTLAFIAWGVIPYGEgvVLSDLGIGILYLFAVSSISVYAVLMSGWSSNSKYAFLGAIRAAAQMISYEVSIGLIIISVVLC 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 163 IGGFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSM 242
Cdd:MTH00054  161 VGSLNLTEIVLAQKNIWFIFPLFPAAIMFFVSALAETNRVPFDLTEGESELVSGFNVEYSSMSFALFFLAEYCHIILMST 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828128 243 LFSL*FLGGDFYSF----------MFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSILF 310
Cdd:MTH00054  241 FGVILFLGGWLVISgptsyfsnfvWFGIKIALIIFLFIWIRASYPRIRYDQLMALLWKSYLPLSLAFVVLVSGILIGF 318
PRK06076 PRK06076
NADH-quinone oxidoreductase subunit NuoH;
5-297 2.34e-83

NADH-quinone oxidoreductase subunit NuoH;


Pssm-ID: 235692  Cd Length: 322  Bit Score: 254.35  E-value: 2.34e-83
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   5 LFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFN 84
Cdd:PRK06076    9 LLLILLKAVVILVVVLLCVAFLIWFERKVLARMQLRYGPNRVGPFGLLQLVADGIKLLFKEDIIPAGADKVLFLLAPVIA 88
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  85 LMISLFIWVVFPYMTY--MCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIIL 162
Cdd:PRK06076   89 FIPAFLAWAVIPFGPElvIADLNVGILYILAISSLGVYGVILAGWASNNKYALLGALRAAAQMISYEVPLGLSLLAVVLL 168
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 163 IGGFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSM 242
Cdd:PRK06076  169 AGSLNLSDIVEAQFLSWNIIPQPPAFVVFFIAAVAETNRHPFDLPEAESELVAGYHTEYSGMKFGLFFLGEYINMILVSA 248
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1896828128 243 LFSL*FLGG----------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:PRK06076  249 LITTLFLGGwlppfplgggIPGAIWFVLKVAFFVFLFIWLRATLPRYRYDQLMRLGWKVLLPLSL 313
ND1 MTH00216
NADH dehydrogenase subunit 1; Provisional
1-306 1.16e-82

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 164761  Cd Length: 327  Bit Score: 252.73  E-value: 1.16e-82
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   1 MFYDLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLS 80
Cdd:MTH00216    1 MMVFIIFYLIKILIIIVPLLIAVAYLTLAERKVLGYMQARKGPNVVGVYGLLQPFADGVKLFTKEMVIPHHANLFVYIVA 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  81 PIFNLMISLFIWVVFPYM--TYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLS 158
Cdd:MTH00216   81 PVLSFTLALIVWGVIPYErgVLISDFKIGILYILAISSISVYAILMSGWGSNSKYAFLGAIRAAAQMISYEVSIGLIIIS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 159 LIILIGGFNMFDFMNYQF-YCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI 237
Cdd:MTH00216  161 VLLCVGSLSITEIVLAQNnGIWFFFPLFPVAIMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALFFLAEYAHI 240
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1896828128 238 *FMSMLFSL*FLGG--------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGL 306
Cdd:MTH00216  241 ILMSCLTTILFLGGwlspikyfKGGAGWFGLKVVFIIFLFIWVRASFPRIRYDQLMALLWKSYLPLSLGVVIFVASV 317
ND1 MTH00029
NADH dehydrogenase subunit 1; Provisional
3-310 3.75e-68

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177108  Cd Length: 343  Bit Score: 216.04  E-value: 3.75e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   3 YDLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPI 82
Cdd:MTH00029    4 YSYITVTIKLLIIFVPLLLSVAYLTLAERKVLGLMQNRKGPAIVGPWGLVQPIADGVKLLTKELIIPSQANKFLYYIAPI 83
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  83 FNLMISLFIW--VVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLI 160
Cdd:MTH00029   84 ISFTLAILAWaiVTMDQGVFLSDLDVGVLYFLAISSLSVYAILLSGWASNSRYPFLGAIRCAAQMISYEVAIGLIIISVI 163
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 161 ILIGGFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FM 240
Cdd:MTH00029  164 LCVGSLNISEIVISQRSVWLIIPLFPAAIMFMVASLAETARAPFDLTEGESELVSGFNVEYSSLSFALFFLAEYSNIILM 243
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 241 SMLFSL*FLGG-----------------------DFYSFMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSL 297
Cdd:MTH00029  244 SCMMTIFFLGGwlspldgiptppeafsifeqiasSKSSFWFFTKSSIFILFFIWSRASFPRIRYDQLMKLLWKTYLPLSL 323
                         330
                  ....*....|...
gi 1896828128 298 NFLFFFIGLSILF 310
Cdd:MTH00029  324 GLVILTAGILIGF 336
ND1 MTH00090
NADH dehydrogenase subunit 1; Provisional
11-308 6.51e-59

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177153  Cd Length: 284  Bit Score: 190.50  E-value: 6.51e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  11 NFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMISLF 90
Cdd:MTH00090    1 MLLLMMIFILQAIAFITLYERHLLGSSQNRLGPNKVSFMGVLQALLDGVKLLKKEQMLPLNSSDLSFLLVPGVSFVVMYL 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  91 IWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGGFNMFD 170
Cdd:MTH00090   81 EWFVLPYFFDFLSFEYSLLFFLCLIGFSVYTTLISGIVSKSKYGFLGALRASSQSISYEIAFSLYLLSIMLHNNSFSFVS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 171 FMNYQFYCWFiifsfplsLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLFSL*FLg 250
Cdd:MTH00090  161 SFSLSLFVIY--------LPFLIMIIAELNRAPFDFSEGESELVSGYNVEYSSVAFVLLFLSEYGSLIFFSVLTSVLFF- 231
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828128 251 gDFYSFMFFIKLAFMSFIfvwvRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSI 308
Cdd:MTH00090  232 -KFSFLMLFLIFSLLIFI----RSSYPRFRYDMMMSMFWFKFLPLSLIFLGFFVVLFI 284
ND1 MTH00058
NADH dehydrogenase subunit 1; Provisional
6-304 2.32e-48

NADH dehydrogenase subunit 1; Provisional


Pssm-ID: 177130  Cd Length: 293  Bit Score: 163.56  E-value: 2.32e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   6 FMFILNFILLIICVLIsVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNL 85
Cdd:MTH00058    2 FGLVSGLEGLLIILLL-VAFFILGERKILGYIQLRKGPNKVGIVGLLQSFADLLKLVVKFKVYGFQSRSWFSLFGVFLLV 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  86 MISLFIWVVFPYMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIGG 165
Cdd:MTH00058   81 LLVVFYCFIYGSYYSGSYSSLSLLWFLVVTSFSSYSLLCVGWGSYNKYSLLSSIRSAFGSVSFEACFMCIVIFCGLCYGS 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 166 FNMFDFMnyqFYCWFIIFSFPLSLSFFASC-LAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:MTH00058  161 YSLVDFY---YSGWLSVLLFPLIYILWLVCiLCETNRTPFDYGESESELVSGFNTEYSGIYFTCLFACEYLIIFIFSWLG 237
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 245 SL*FLGGDFYSFMFFIKLAFmsfiFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFI 304
Cdd:MTH00058  238 SVLFFGGGFVSIMLLFHLLF----FMWARATLPRVRYDYFVNFFWEYCLVLLILSLFVIV 293
F420_dehyd_FpoH NF040610
F420H2 dehydrogenase subunit FpoH;
15-310 1.14e-42

F420H2 dehydrogenase subunit FpoH;


Pssm-ID: 468582  Cd Length: 339  Bit Score: 149.85  E-value: 1.14e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  15 LIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSPIFNLMISLFIWVV 94
Cdd:NF040610   19 LIGAVFGGAMLAVWLERKLSADIQFRYGPNRVGPWGILQLVADAIKLFTKEDIIPRKADKLLYVSAPIVAMGSVFLMLVA 98
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  95 FP----------YMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILIG 164
Cdd:NF040610   99 IPfgaviingveYPLVVTNMDISILYIEAVSAISIIGIFMAGYSSNNKYSLLGAFRNFARMIGYEVPLGICVVSVAIMAG 178
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 165 GFNMFDFMNYQFYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FMSMLF 244
Cdd:NF040610  179 SLNIVEIVEAQSPIWFAFLQPIGFIVFFIALMADMGRLPFDQNEAEEELIAGWITEYSGMRFGLGFFAEYIHLILGSFLV 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 245 SL*FLGG-------------DFYSFM--FFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFIGLSIL 309
Cdd:NF040610  259 VLLFLGGwnlpgfvtdipvlGIILPTlfFLMKVAIVLMFIIMIRWAVPRFRIDQVVDLSWKRLLPLSLLNLGWAIALGLY 338

                  .
gi 1896828128 310 F 310
Cdd:NF040610  339 L 339
ndhA CHL00032
NADH dehydrogenase subunit 1
2-297 1.01e-32

NADH dehydrogenase subunit 1


Pssm-ID: 214341  Cd Length: 363  Bit Score: 123.91  E-value: 1.01e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   2 FYDLFMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPNKVGFLGIPQPFSDAIKLICKEQPIPFMSNYFLYYLSP 81
Cdd:CHL00032   23 VYGLIWILVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKEDLLPSRGDIRLFSIGP 102
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  82 IFNLMISLFIWVVFP--YMTYMCSFSYGFLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSL 159
Cdd:CHL00032  103 SIAVISILLSYLVIPfgYHLVLADLSIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 182
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 160 IILIGGFNMFDFMN----YQFYCWFIiFSFPLS-LSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY 234
Cdd:CHL00032  183 SLLSNSLSTVDIVEaqskYGFWGWNL-WRQPIGfIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASY 261
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 235 *SI*FMSMLFSL*FLGG-----------DFYS--------------FMFFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAW 289
Cdd:CHL00032  262 LNLLVSSLFVTVLYLGGwnlsipyifipELFEinktggvfgttigiFITLAKTYLFLFISITTRWTLPRLRMDQLLNLGW 341

                  ....*...
gi 1896828128 290 KSFLPLSL 297
Cdd:CHL00032  342 KFLLPISL 349
HyfC COG0650
Formate hydrogenlyase subunit HyfC [Energy production and conversion];
6-304 1.95e-24

Formate hydrogenlyase subunit HyfC [Energy production and conversion];


Pssm-ID: 440415  Cd Length: 303  Bit Score: 100.26  E-value: 1.95e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128   6 FMFILNFILLIICVLISVAFLTLLERKVLSYIQIRKGPnkvgflGIPQPFSDAIKLICKEQPIPfMSNYFLYYLSPIFNL 85
Cdd:COG0650     1 MMLILLALLQLLLALLLAPLLLGIIRKVKARLQGRRGP------PILQPYYDLLKLLRKETVVP-ETASWLFRAAPYVAL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128  86 MISLFIWVVFPYMTYMCSFSYG--FLFFLCCTSLSVYTLMIAGWSSNSNYSLLGSLRSVAQTISYEVSLALILLSLIILI 163
Cdd:COG0650    74 AAMLLAALLVPVLTTGPPLSFSgdLIVLVYLLALARFFLALAGLDSGSPFGGIGASREMTLSALAEPPLLLVLFALALLA 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 164 GGFNMFDFMNYQ---FYCWFIIFSFPLSLSFFASCLAETNRTPFDFAEGESELVSGFNIEYGAGGFTLIFLAEY*SI*FM 240
Cdd:COG0650   154 GSTSLSDIVAYQaahGPLLLSPSLLLAAIAFFIVLLAETGRIPFDIPETHLELHEGMLLEYSGRHLALLELAAALKLFVL 233
                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828128 241 SMLFSL*FLGGDFYSFM------FFIKLAFMSFIFVWVRGTLPRFRYDKLMYLAWKSFLPLSLNFLFFFI 304
Cdd:COG0650   234 LSLFVNLFLPWGIALTLllalllFLLKLLVLAVLLAVIEASTARLRLFRVPDFLWTAFLLALLALLLAVL 303
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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