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Conserved domains on  [gi|1896828144|gb|QNJ59962|]
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NADH dehydrogenase subunit 2 (mitochondrion) [Melanoplus confusus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475933)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.23e-93

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 281.33  E-value: 2.23e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   1 MTNNSKKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  81 KYPMMweeEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQlSKFMFTIVIFSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 161 GAMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 241 FLSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILS 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896828144 321 LTVMISTLGLMSSSMLISL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.23e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 281.33  E-value: 2.23e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   1 MTNNSKKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  81 KYPMMweeEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQlSKFMFTIVIFSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 161 GAMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 241 FLSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILS 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896828144 321 LTVMISTLGLMSSSMLISL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.45e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.44  E-value: 6.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  24 SNSWFGVWMGLEINLLSFIP-MLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLI--------------QMKYPMMWEE 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  89 EMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTL-MTWQKIAPMMVL-------SYCIQLSKFMFTIVIFSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 161 GAMGGLNQTSLRQILAYSSISHLGWMISSLMV----SENTWELYLIIYSLLSLIIV-----IIFKQMNLFFLNQIYSSTS 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896828144 232 LKTETKFLMFLSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-336 2.19e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.78  E-value: 2.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLmmGTILSISSNSWFGVWMGLEINLLSFIPMLT-NNKNMMMNESSIKYFIVQAMASTMLLFSILLI-------- 78
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  79 ----------QMKYPMMWeeeMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVL-------- 140
Cdd:COG1007   185 lagiaaalaaGGANSPLL---LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 141 -SYCIQLSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMV-SENTWE---LYLIIYSLLSL--IIVI 213
Cdd:COG1007   262 pGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgaFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 214 IFKQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYM 290
Cdd:COG1007   342 LLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAgipPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1896828144 291 RISFSALILSYSENSWSMNNMSNKSSLILSlTVMISTLGLMSSSML 336
Cdd:COG1007   422 RVVKAMYFDEPEEEAPISAPPGLRVALVIA-ALLVLLLGIFPGPLL 466
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-337 7.99e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 7.99e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLF------------- 73
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  74 --SILLIQMKYPMMWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIA---PMMVLSYCIQ--- 145
Cdd:TIGR01770 185 feDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 146 ---LSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMV-SENTWE---LYLIIYSLLSL---IIVIIF 215
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAgTLEGIKavlFYIFIYALMSLgafGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 216 KQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRI 292
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAgipPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1896828144 293 sfSALILSYSENSWS-MNNMSNKSSLILSLTVMISTLGLMSSSMLI 337
Cdd:TIGR01770 425 --VKVMYFDKPERRIpSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
 
Name Accession Description Interval E-value
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 1-339 2.23e-93

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 281.33  E-value: 2.23e-93
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   1 MTNNSKKLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQM 80
Cdd:MTH00160    1 MMMNSSKLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  81 KYPMMweeEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQlSKFMFTIVIFSIII 160
Cdd:MTH00160   81 NLMLF---NNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYLIN-NNFIIIIIILSAII 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 161 GAMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLM 240
Cdd:MTH00160  157 GAIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLL 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 241 FLSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILS 320
Cdd:MTH00160  237 FLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISYSSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*....
gi 1896828144 321 LTVMISTLGLMSSSMLISL 339
Cdd:MTH00160  317 FLSFISLFGLILSSLLFLL 335
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 8-340 7.87e-55

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 182.74  E-value: 7.87e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQM---KYPM 84
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMysgQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  85 MWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLsYCIQLS---KFMFTIVIFSIIIG 161
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSIL-YQISPSinpNLLLTLAILSILIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 162 AMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMnlfflnqiySSTSLKTETKFLMF 241
Cdd:MTH00105  166 GWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLN---------SSTTTLSLSHTWNK 236

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 242 LSLLSLGGLPPFL---------GFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFS-ALILSYSENSWSMNNM 311
Cdd:MTH00105  237 TPLMTSLILLTLLslgglppltGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYStSLTMFPSTNNMKMKWQ 316

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1896828144 312 --SNKSSLILSLTVMISTLGLMSSSMLISLY 340
Cdd:MTH00105  317 feNTKPMTLLPTLIILSTMLLPLTPMLSILE 347
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 8-340 4.12e-54

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 180.90  E-value: 4.12e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMKYP---M 84
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGswsI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  85 MWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQL--SKFMFTIVIFSIIIGA 162
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLlnSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 163 MGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFL 242
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 243 SLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENS-----WSMNNMSNKSSL 317
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSislfsWRNSGNITVYGV 326

                         330       340
                  ....*....|....*....|...
gi 1896828144 318 ILSLTVMISTLGLMSSSMLISLY 340
Cdd:MTH00041  327 ILSILSSISILGLLLIPLFLSFL 349
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 10-340 3.09e-52

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 175.88  E-value: 3.09e-52
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  10 FLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILL---IQMKYPMMW 86
Cdd:MTH00070    9 LLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTInawFTGEWTIMN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  87 EEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLsycIQLSK-----FMFTIVIFSIIIG 161
Cdd:MTH00070   89 MQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALL---IQISHllnsnLLIIMGLLSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 162 AMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMF 241
Cdd:MTH00070  166 GWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 242 LSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFsALILSYS---ENSWSMNNMSNKSSLI 318
Cdd:MTH00070  246 LTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSY-AMSLTTSpntSNSKLYWRFKNKTNNL 324

                         330       340
                  ....*....|....*....|..
gi 1896828144 319 LSLTVMISTLGLMSSSMLISLY 340
Cdd:MTH00070  325 LSLTIILSLMLLPITPTILNLF 346
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 7-339 1.44e-51

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 174.24  E-value: 1.44e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   7 KLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQM---KYP 83
Cdd:MTH00112    6 KLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWntgQWD 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  84 MMWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQL--SKFMFTIVIFSIIIG 161
Cdd:MTH00112   86 ITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSlnPTLLLTLAILSTLIG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 162 AMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMF 241
Cdd:MTH00112  166 GWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTLM 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 242 LSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISF-SALILSYSENSWSMN-NMSNKSSLIL 319
Cdd:MTH00112  246 LTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYiSTITLPPNTTNMMMKwRTKPKKNTLT 325

                         330       340
                  ....*....|....*....|
gi 1896828144 320 SLTVMISTLGLMSSSMLISL 339
Cdd:MTH00112  326 ATLTTLSTLLLPLSPMILTI 345
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 9-328 3.15e-49

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 167.54  E-value: 3.15e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   9 LFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMKYPMmwee 88
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNLYL---- 77

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  89 EMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQLSKFMFTIVIFSIIIGAMGGLNQ 168
Cdd:MTH00197   78 SLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSSSFMGLLICSVLSSLIGGIGGMNQ 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 169 TSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLG 248
Cdd:MTH00197  158 SNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLSFLSLG 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 249 GLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILSLTVMISTL 328
Cdd:MTH00197  238 GLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLILSNWMINFLMKINLLYSGLFILLMMMLPLL 317
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 8-339 5.47e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 164.76  E-value: 5.47e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMKYPMMWE 87
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  88 EEMLPSM---MVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLS--YCIQLSKFMFTIVIFSIIIGA 162
Cdd:MTH00200   87 SEMLGPLsetLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIqlAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 163 MGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFL 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 243 SLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNK--SSLILS 320
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKsnSNLLVG 326

                         330
                  ....*....|....*....
gi 1896828144 321 LTVMISTLGLMSSSMLISL 339
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLFL 345
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 7-321 8.92e-47

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 161.21  E-value: 8.92e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   7 KLLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIqmkypMMW 86
Cdd:MTH00144    6 NLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIM-----YNL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  87 EEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQLSKFMFTIVIFSI---IIGAM 163
Cdd:MTH00144   81 SFSWFSMSLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLAYLLCVISVlsaLVGSI 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 164 GGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKtETKFLMFLS 243
Cdd:MTH00144  161 GGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWSGDSGSMKDLGSLKPSY-KTGLSIISL 239

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1896828144 244 LLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILSL 321
Cdd:MTH00144  240 LLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFLSSSKSKKSNSSKVLNSSIISLNL 317
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 9-330 2.46e-46

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 160.36  E-value: 2.46e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   9 LFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSIL----------LI 78
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTtnawltgqwdIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  79 QMKYPmmweeemLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLsycIQLSKFMFTIVIF-- 156
Cdd:MTH00135   88 QMSHP-------LPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALI---LQIAPTNPTLLITlg 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 157 --SIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNlfflnqiysSTSLKT 234
Cdd:MTH00135  158 ltSTLVGGWGGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNS---------STKINT 228

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 235 ETKFLMFLSLLSLGGLPPFL---------GFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFsALILSYSEN- 304
Cdd:MTH00135  229 LATSWTKAPALTALTPLILLslgglppltGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSY-AMTLTISPNt 307

                         330       340       350
                  ....*....|....*....|....*....|.
gi 1896828144 305 -----SWSMNnmSNKSSLILSLTVMISTLGL 330
Cdd:MTH00135  308 lngttPWRLP--STQLTLPLAISTTATLMLL 336
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 8-321 1.15e-41

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 148.00  E-value: 1.15e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMKYPMMwe 87
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGMTMMWSFPSLL-- 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  88 eEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYC--IQLSKFMFTIVIFSIIIGAMGG 165
Cdd:MTH00011   87 -KNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFtsHNILPMMTSMAAMSALAGGLGG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 166 LNQTSLRQILAYSSISHLGWMISSLMVSENTWELYLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFLSLL 245
Cdd:MTH00011  166 MNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIMLL 245

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1896828144 246 SLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRISFSALILSYSENSWSMNNMSNKSSLILSL 321
Cdd:MTH00011  246 SLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIFNFMYLSPTFSSLKSAPYEPKTKILISM 321
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 24-282 6.45e-19

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 85.44  E-value: 6.45e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  24 SNSWFGVWMGLEINLLSFIP-MLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLI--------------QMKYPMMWEE 88
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLlIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMynytgtlsfdelskALTGGLNSSG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  89 EMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTL-MTWQKIAPMMVL-------SYCIQLSKFMFTIVIFSIII 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLaATLVKAGGYGLIrrsllylPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 161 GAMGGLNQTSLRQILAYSSISHLGWMISSLMV----SENTWELYLIIYSLLSLIIV-----IIFKQMNLFFLNQIYSSTS 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAgtiyGIQAAIFHLLTHGLFSAGLFlcagsVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 1896828144 232 LKTETKFLMFLSLLSLGGLPPFLGFLPKWIIMQSLIENNMTILMAIMTLLT 282
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 16-292 1.24e-18

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 85.47  E-value: 1.24e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  16 MGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMN-ESSIKYFIVQAMASTMLLFSI----------------LLI 78
Cdd:MTH00196    4 LGILCLISSSNWLSVYLAIELQTLSLFILIAQNRGSGYSaEAGLKYFVLGALSSGLFLFGCallcgttgglhlsyinLVL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  79 QMKYPMMWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQLSKFMFTIVIFSI 158
Cdd:MTH00196   84 NSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVNILLIGGLFSL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 159 IIGAMGGLNQTSLRQILAYSSISHLGWMISSLMV----SENTWELYLIIYSLLSLIIVIIFKQMNlFFLNQIYSSTSLKT 234
Cdd:MTH00196  164 FVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIgsfeSIQASLVYLFIYIIMSICVFSIILALN-VYKNLIIEFSGLSR 242

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1896828144 235 ETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRI 292
Cdd:MTH00196  243 RLPILAITLALTFLSIAgipPLVGFLGKWLILLSGVVYQYYLIFLLAVFCSVIAGVYYVRI 303
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 8-336 2.19e-16

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 79.78  E-value: 2.19e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLmmGTILSISSNSWFGVWMGLEINLLSFIPMLT-NNKNMMMNESSIKYFIVQAMASTMLLFSILLI-------- 78
Cdd:COG1007   107 LLLFATL--GMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYGISLLygatgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  79 ----------QMKYPMMWeeeMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVL-------- 140
Cdd:COG1007   185 lagiaaalaaGGANSPLL---LLGLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIAAFAALlrllveaf 261

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 141 -SYCIQLSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMV-SENTWE---LYLIIYSLLSL--IIVI 213
Cdd:COG1007   262 pGLAADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAgTPLGVSaalFYLLAYLFMNLgaFAVI 341

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 214 IFKQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYM 290
Cdd:COG1007   342 LLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAgipPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYL 421

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1896828144 291 RISFSALILSYSENSWSMNNMSNKSSLILSlTVMISTLGLMSSSML 336
Cdd:COG1007   422 RVVKAMYFDEPEEEAPISAPPGLRVALVIA-ALLVLLLGIFPGPLL 466
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
8-292 2.58e-16

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 79.48  E-value: 2.58e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLI-------- 78
Cdd:PRK05777  108 LVLFALL--GMMVMVSANDLLTLFLGLELlSLPLYALAALRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLygatgsls 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  79 ----------QMKYPMMWeeeMLPSMMVSSSLLLKIGAAPFHFWFPEV-----------MSTSTwincltlmtwqKIAPM 137
Cdd:PRK05777  186 fagiakaladGSGNSLLL---LFGLVFLLVGLAFKLSAVPFHMWTPDVyegaptpvtafLATAP-----------KIAAF 251

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 138 MVL---------SYCIQLSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLM-VSENTWE---LYLIIY 204
Cdd:PRK05777  252 AVLlrllvvafgGLSEDWQQVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAaGTAEGYSavlFYLLAY 331

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 205 SLLSL--IIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMT 279
Cdd:PRK05777  332 LFMTLgaFGVISLLRRKGGEAESISDFAGLSKRSPLLAAVMTIFMLSLAgipPTAGFWGKFYVFEAAVEAGLWWLAVIGV 411

                         330
                  ....*....|...
gi 1896828144 280 LLTTITLYYYMRI 292
Cdd:PRK05777  412 LNSAIGAFYYLRV 424
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 8-337 7.99e-16

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 78.07  E-value: 7.99e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLmmGTILSISSNSWFGVWMGLEI-NLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLF------------- 73
Cdd:TIGR01770 107 LLLFALL--GIFLLVSSNDLLSIYLGLELqSLCFYVLAGLKRKSRFSTEAGLKYFILGAFSSGLLLFgisliygftgsln 184

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  74 --SILLIQMKYPMMWEEEMLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIA---PMMVLSYCIQ--- 145
Cdd:TIGR01770 185 feDLLLFLSNGMLNISLLLLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILfgf 264

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 146 ---LSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMV-SENTWE---LYLIIYSLLSL---IIVIIF 215
Cdd:TIGR01770 265 seaWQIFLAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAgTLEGIKavlFYIFIYALMSLgafGVLSLL 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 216 KQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRI 292
Cdd:TIGR01770 345 RSYKDEWIEYISDFAGLFKTNPILAILILIFMFSLAgipPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRV 424

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1896828144 293 sfSALILSYSENSWS-MNNMSNKSSLILSLTVMISTLGLMSSSMLI 337
Cdd:TIGR01770 425 --VKVMYFDKPERRIpSNPQSKAQSLLLSISALFILFLGLFPSLIL 468
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 16-292 1.08e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 77.75  E-value: 1.08e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  16 MGTILSISSNSWFGVWMGLEINLLS-FIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILL---------IQMKYPMM 85
Cdd:MTH00199  108 LGSLLLVSSINWLSIYLAIELQTLTlFILVALKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALlygltgetsIQGINSIL 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  86 WEEemLPSMMVSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQLSKFMFTIVIFSIIIGAMGG 165
Cdd:MTH00199  188 TGD--VGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLICAVLSIIYGAIGA 265

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 166 LNQTSLRQILAYSSISHLGWMISSLMVSEN----TWELYLIIYSLLSLIIVIIFKQMNLFFlNQIYSSTSLKTETKFLMF 241
Cdd:MTH00199  266 LNQTKIKRLLAYSGIGHMGFILFGVAIGSFesiqASLIYMIIYVIMSICSFSIILSLKLTK-GLIVEVSGLSRKNPVIAL 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1896828144 242 LSLLSLGGLP---PFLGFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMRI 292
Cdd:MTH00199  345 TLALTFLSIAgipPLAGFLSKWLILLSGVSSGYYLICIIAVLSSVIAGVYYVRV 398
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 16-198 4.63e-13

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 69.89  E-value: 4.63e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  16 MGTILSISSNSWFGVWMGLEINLLSFIPM---------LTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIqmkYPMMW 86
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILagegsqpgsHFPSPGNTPPESGLKYWILGAMSSGFYLFGCALY---FGFTG 275

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  87 EEEMLPSMM--------------------VSSSLLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQL 146
Cdd:MTH00198  276 NEGMLGTILsatlettnielrqgslgylfITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILLTSLVIT 355

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1896828144 147 SKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMIssLMVSENTWE 198
Cdd:MTH00198  356 SKLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFIL--IGVSAGTYE 405
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-292 3.82e-09

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 57.46  E-value: 3.82e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  10 FLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMKY------P 83
Cdd:COG0651   112 LFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATgtlnmaD 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  84 MMWEEEMLPSMMVSSSLLL-------KIGAAPFHFWFPEVMST-STWINCL--TLMTwqKIAPMMVL---------SYCI 144
Cdd:COG0651   192 LAARLAELDPGLLLAAFALllvgfgiKAALFPLHFWLPDAYPAaPSPVSALlsGLLT--KVGVYAILrvltllfgaDPAL 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 145 QLSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMVSeNTWELYLIIYSLLSLIIVIIfkqmNLFFL- 223
Cdd:COG0651   270 FLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLG-TPLGLAGALFHLLNHALAKA----LLFLAa 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 224 NQIYSSTSLKTETKFLMFLSLLSLGGLPPFL------------GFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMR 291
Cdd:COG0651   345 GAIERATGTRDLDKLGGLGKRMPLTAAAFLIgalalaglpplsGFVSKWLLLQAALEAGAWLLAAVLLLSSLLTLAYFVR 424


                  .
gi 1896828144 292 I 292
Cdd:COG0651   425 I 425
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 34-187 3.44e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 45.26  E-value: 3.44e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  34 LEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILLIQMK---YPMMWEEEMLPSM--------MVSSSLLL 102
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGVGLLYGVtgtLNMADLAGALAENptvvtafgFVLLALAL 214

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 103 KIGAAPFHFWFPEVMS-TSTWINCLTLMTWQKIApmmvlSYCiqLSKFMFTI------------------VIFSIIIGAM 163
Cdd:PRK08375  215 KAAVFPLHTWLPRAYPaAPPVVTALLSGLVTKVA-----VYA--LIRIYFTVfggdfrfalglgwllavlALLSMLVGSL 287

                         170       180
                  ....*....|....*....|....
gi 1896828144 164 GGLNQTSLRQILAYSSISHLGWMI 187
Cdd:PRK08375  288 AALGQDDVKRVLAYSTVSQMGYIL 311
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 55-296 3.74e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 45.47  E-value: 3.74e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  55 ESSIKYFIVQAMASTMLLFSILLIQMKY--------PMMWEEEMLPSMMVS-----SSLLLKIGAAPFHFWFPEVMSTS- 120
Cdd:PRK08376  172 EAGIKYMFVGSLASSMVLLGIALLYGQYgtlnmaylAVKMSENPTVVAKIAlalfiAGLAMKSGAVPVHMWLPDAYPAAp 251

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 121 TWINCLTLMTWQ-KIAPMMVLSYCI-----QLSKFMFTIVIF---SIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLM 191
Cdd:PRK08376  252 SSISAMLLVIKQaGLYALARVLFSIygpaiNLATVGWVIIILgclTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLLGLG 331

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 192 VSENTWEL--------------------YLIIYSLLSLIIVIIFKQMNLFFLNQIYSSTSLKTETKFLMFLSLLSLGGLP 251
Cdd:PRK08376  332 VGLAALGDpamasygeialaggiyhivnHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLP 411

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 1896828144 252 PFLGFLPKWIIMQSLIENNmTILMAIMTLLTTITLYYYMRISFSA 296
Cdd:PRK08376  412 PFNGFASKWLIYESSALFN-PILGVIAMIGSVLTLASFVKVFHTA 455
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 8-187 1.74e-04

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 43.00  E-value: 1.74e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144   8 LLFLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMmneSSIKYFIVQAMASTMLLFSILLIQMKYPMMW- 86
Cdd:TIGR01972 112 LLLLEAGVIGVFLALDLFLFYVFWEAMLIPMYLLIGVWGGPNRIY---AAMKFFLYTLAGSLLMLLAILGLYFLGGGTFd 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  87 -EEEMLPSMMVSSSLLL----------KIGAAPFHFWFPEVMSTSTWINCLTLM-TWQKIAPMMVLSYCIQL-------- 146
Cdd:TIGR01972 189 lLELLNLPLPFGVQTWLflaffiafavKVPLFPLHTWLPDAHVEAPTAGSVILAgVLLKMGTYGFLRFNLPLfpdaslyf 268

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1896828144 147 SKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMI 187
Cdd:TIGR01972 269 APVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309
PRK12650 PRK12650
DUF4040 family protein;
108-192 1.98e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.11  E-value: 1.98e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 108 PFHFWFPEVMSTSTWINCLTLmtwqkiAPMMVLSYCIQLSKF-------------MFTIVIFSIIIGAMGGLNQTSLRQI 174
Cdd:PRK12650  226 PFHFWLPEAMAAITPVSAFLH------AAAVVKAGIYLLLRFspvfhdvavwnwlLIIVGMITALMGAVFAVQKTDLKKL 299

                          90
                  ....*....|....*...
gi 1896828144 175 LAYSSISHLGWMISSLMV 192
Cdd:PRK12650  300 TAYSTVSQLGWIVATIGV 317
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
10-296 1.27e-03

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 40.32  E-value: 1.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  10 FLSTLMMGTILSISSNSWFGVWMGLEINLLSFIPMLTNNKNMMMNESSIKYFIVQAMASTMLLFSILL------------ 77
Cdd:PRK12663  113 FILLLMAGVIGSFLTGDLFNLYVWFEVMLIASFVLITLGQEREQLRGAIKYVVLNLIGSWLFLLGIGLlygtfgtlnmah 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144  78 IQMKYPMMWEEEMLpsMMVSSSLLL----KIGAAPFhFWFPEVMST-STWINCL--TLMTWQKIAPM---MVLSYCIQ-- 145
Cdd:PRK12663  193 IAMRLNDMGDTATL--TTIALLFLLafgmKAALFPF-MWLPAAYHTpNTEVAALfaALLTKVGIYALirvFTLLFPQEre 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 146 -LSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLGWMISSLMVSeNTWELYLIIYSLLSLIIVIIFkqmnLFFL- 223
Cdd:PRK12663  270 lLHPLLATMAAITMVIGALGALAYKDIRRIAGYQVISSIGFILLGLALG-TPAGINGAIFYLVHDMVVKTA----LFLIa 344

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 224 ---NQIYSSTSLKTETKFLMFLSLLSLGGLPPFL---------GFLPKWIIMQSLIENNMTILMAIMTLLTTITLYYYMR 291
Cdd:PRK12663  345 gslVRLTGYRSLQYLGGLYRKEPLFGALFLILIFaigglppfsGFWGKVLLVQGALDNGAYILLALMLITSLITMYSLFR 424


                  ....*
gi 1896828144 292 ISFSA 296
Cdd:PRK12663  425 IFFLA 429
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 145-184 3.26e-03

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 39.29  E-value: 3.26e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1896828144 145 QLSKFMFTIVIFSIIIGAMGGLNQTSLRQILAYSSISHLG 184
Cdd:COG1008   273 YFAPLLAALGVIGIIYGALVALAQTDLKRLIAYSSVSHMG 312
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 100-189 3.41e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 39.16  E-value: 3.41e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 100 LLLKIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMMVLSYCIQLSKFMFTIV----IFSIIIGAMGGLNQTSLRQIL 175
Cdd:PRK07234  194 LLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVrifgVGTALLGVLFALLEKDLKRML 273

                          90
                  ....*....|....
gi 1896828144 176 AYSSISHLGWMISS 189
Cdd:PRK07234  274 AFSTISQLGFILAA 287
ndhB CHL00049
NADH dehydrogenase subunit 2
 103-194 3.76e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 38.83  E-value: 3.76e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1896828144 103 KIGAAPFHFWFPEVMSTSTWINCLTLMTWQKIAPMM--------VLSYCIQLSKFMFTIV-IFSIIIGAMGGLNQTSLRQ 173
Cdd:CHL00049  227 KLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASAlatrifdiPFYFSSNEWHLLLEILaILSMILGNLIAITQTSMKR 306

                          90       100
                  ....*....|....*....|.
gi 1896828144 174 ILAYSSISHLGWMISSLMVSE 194
Cdd:CHL00049  307 MLAYSSIGQIGYVIIGIIVGD 327
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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