NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|1899176104|gb|QNO34136|]
View 

NADH dehydrogenase subunit 5 (mitochondrion) [Osmia pedicornis]

Protein Classification

NADH dehydrogenase subunit 5( domain architecture ID 11475935)

NADH dehydrogenase subunit 5 (ND5/NADH5) is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that functions in the transfer of electrons from NADH to the respiratory chain; the immediate electron acceptor for the enzyme is believed to be ubiquinone

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-547 7.85e-137

NADH dehydrogenase subunit 5; Provisional


:

Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 408.76  E-value: 7.85e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNLMVYKFNLLMLILLMLV-------AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYF 233
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIgllimlaAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 234 NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSS 313
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 314 QDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFS 393
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 394 KKNYYV--NLIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMKIMVMKLIFFGILIG-------QFFYFN 464
Cdd:MTH00165  403 DFNLKSlnNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGyelslmsLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 465 SFKMNKMGNFMSTMFYIEKIYQYYDI--PLNLIMLYENIHEKNLFEFKI------KFIKLKFYLFKYKLNEYNFLSMLLT 536
Cdd:MTH00165  483 SLKNYKLSSFLGSMWFMPFLSTYGISyyPLNLGSLSLKSFDQGWSEYFGgqglynFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1899176104 537 NLLMMLIFIIL 547
Cdd:MTH00165  563 LWMIILLLLFL 573
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-547 7.85e-137

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 408.76  E-value: 7.85e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNLMVYKFNLLMLILLMLV-------AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYF 233
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIgllimlaAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 234 NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSS 313
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 314 QDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFS 393
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 394 KKNYYV--NLIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMKIMVMKLIFFGILIG-------QFFYFN 464
Cdd:MTH00165  403 DFNLKSlnNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGyelslmsLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 465 SFKMNKMGNFMSTMFYIEKIYQYYDI--PLNLIMLYENIHEKNLFEFKI------KFIKLKFYLFKYKLNEYNFLSMLLT 536
Cdd:MTH00165  483 SLKNYKLSSFLGSMWFMPFLSTYGISyyPLNLGSLSLKSFDQGWSEYFGgqglynFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1899176104 537 NLLMMLIFIIL 547
Cdd:MTH00165  563 LWMIILLLLFL 573
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
17-395 4.21e-77

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 254.69  E-value: 4.21e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  17 FLLTLIIFF-----KSKLIMLEWMiySYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVIL 91
Cdd:COG1009    42 FVLSLLLFPavlggEVVVELYTWI--PVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLL 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  92 FVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNLMVYKF 169
Cdd:COG1009   120 FMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDLGLLLgILLLGAIAGTLNFSELLA 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 170 NLLMLILLMLV----------AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIR-YNKFLFLDYFNKYIL 238
Cdd:COG1009   200 AAPTILSSPLLtlillllllgAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARlSPLFALSPVWLTVVA 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 239 LISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRC 318
Cdd:COG1009   280 IIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHA-TGTRDIRK 358
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1899176104 319 YGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIME-LIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKK 395
Cdd:COG1009   359 MGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
30-426 4.40e-67

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 227.94  E-value: 4.40e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  30 IMLEWMiySYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTIL 109
Cdd:TIGR01974  63 SLFPWI--SVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLF 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 110 LGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNLMVYKFNLLMLILLMLVAFT---- 183
Cdd:TIGR01974 141 FGWEGVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLgIFLIFWYFGTLNFQEVFALAPGAFFSALTLIClllf 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 -----KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNkFLFLDYFN--KYILLISSLTMFMAGLIANYEY 256
Cdd:TIGR01974 221 igamgKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTS-PLFELSPTalYLVTIIGAITALFAATVALVQN 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 257 DFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFS 336
Cdd:TIGR01974 300 DIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIG 379
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 337 LLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILV-NFCMFI 415
Cdd:TIGR01974 380 SLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVmLLPLIV 459
                         410
                  ....*....|.
gi 1899176104 416 LLMTIFFMGYL 426
Cdd:TIGR01974 460 LAVGSVFAGFF 470
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-375 2.37e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 125.89  E-value: 2.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 102 SPSFLTILLGWDGLGLISYCLIIYY-QNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSWNLMVYKFNLLML------ 174
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 175 ----ILLMLVAF-TKSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLFLDY--FNKYILLISSLTMF 246
Cdd:pfam00361  81 llllFLLILVGFlFKSAQVPFHTWLPDAYEgAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSpfIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 247 MAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVM 323
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1899176104 324 YIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFS 375
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
 
Name Accession Description Interval E-value
ND5 MTH00165
NADH dehydrogenase subunit 5; Provisional
1-547 7.85e-137

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214444 [Multi-domain]  Cd Length: 573  Bit Score: 408.76  E-value: 7.85e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00165    3 MCLISFFFLFFLSLILFFLGLYFLLNDYSLFIEWELFSLNSSSIVMTFLFDWMSLLFMSFVLFISSMVIYYSKSYMSGDK 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00165   83 NINRFIYLVLLFVLSMMLLIISPNLISILLGWDGLGLVSYCLVIYYQNKKSYNAGMLTALSNRIGDVAILLSIAWMMNFG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNLMVYKFNLLMLILLMLV-------AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYF 233
Cdd:MTH00165  163 SWNFIFYLDFMKNSFEMLLIgllimlaAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFNNLLFSSFF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 234 NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSS 313
Cdd:MTH00165  243 SKFLLLISLLTMFMAGLGANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSNS 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 314 QDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFS 393
Cdd:MTH00165  323 QDIRFMGGLSNFMPLTSSCFNISNLSLCGFPFLSGFYSKDLILEMVSMSNLNFFIFFLFFFSTGLTVSYSFRLIYYSMSG 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 394 KKNYYV--NLIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMKIMVMKLIFFGILIG-------QFFYFN 464
Cdd:MTH00165  403 DFNLKSlnNLSDESKFMLKSMILLLFMSIFGGSMLSWLIFPEPYMICLPFYLKLLTLFVILLGGWLGyelslmsLSYNLK 482
                         490       500       510       520       530       540       550       560
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 465 SFKMNKMGNFMSTMFYIEKIYQYYDI--PLNLIMLYENIHEKNLFEFKI------KFIKLKFYLFKYKLNEYNFLSMLLT 536
Cdd:MTH00165  483 SLKNYKLSSFLGSMWFMPFLSTYGISyyPLNLGSLSLKSFDQGWSEYFGgqglynFLKKLSKLIQWLQNNNLKIYLLSFL 562
                         570
                  ....*....|.
gi 1899176104 537 NLLMMLIFIIL 547
Cdd:MTH00165  563 LWMIILLLLFL 573
ND5 MTH00151
NADH dehydrogenase subunit 5; Provisional
1-485 1.81e-127

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214436 [Multi-domain]  Cd Length: 565  Bit Score: 384.19  E-value: 1.81e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00151    3 MSSLSSFLLFSYSVFLFPLLGYFGLNGISLIFEWELLSVSSCSFSFELVLDWVSLSFSGVVCLISGCVFLFSSSYMSEDP 82
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00151   83 FLKRFMWLVMLFVLSMNLLIFIPSLPSLLLGWDGLGIVSFALVIYYQNKKSLSAGMLTALTNRIGDVLILLSIALLVLLG 162
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNLMVYKFNLLMLILLMLV---AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYI 237
Cdd:MTH00151  163 HWSILSMWDFKLSGWLGLLLvlaAMTKSAQIPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFFPFLSSSSGFSSF 242
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 238 LL-ISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDI 316
Cdd:MTH00151  243 LLfISLLTLLMAGISACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGTQDI 322
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 317 RCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKN 396
Cdd:MTH00151  323 RLLGSLFLSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILESSLMSPTSLLMVLLMFVGVGLTALYSARLSFCLVWGSMK 402
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 397 YYVNLIKK-ESILVNFCMFILLMTIFFMGYLYFKIFNL-NYLILLTLNMKIMVMKLIFFGILIGQFFY---FNSFKMNKM 471
Cdd:MTH00151  403 SSSLSSKSdEDFYVSLPMLLLSLGALIGGKLLQSLFEGfSEEFFLPSYLKLLIGFVILLGLFLSFGFWdsgFSSSKMVKL 482
                         490
                  ....*....|....
gi 1899176104 472 GNFMSTMFYIEKIY 485
Cdd:MTH00151  483 SFFFSSMWFLSPLS 496
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
1-484 1.27e-106

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 330.45  E-value: 1.27e-106
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSwfFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00209    3 KMQMFSLMLLFLFS--FLMFVIFMWFQKIVILEWELLSLNSMSISFPLIIDKMSLLFSSVVLLISGSVMWFSTSYMAGEK 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00209   81 FKKRFILLVLLFILSMNFLIFVPNLITLLLGWDGLGLVSYLLVIYYQNSKSLSAGMLTALTNRVGDALLILSIAWMLMHG 160
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNL----MVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF-LDYFNK 235
Cdd:MTH00209  161 NWNIfylnFNSNLGSVISVLIVLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFFPSLFsSPFFSM 240
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 236 YILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQD 315
Cdd:MTH00209  241 SLLLLGSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSHGHSQD 320
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 316 IRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKK 395
Cdd:MTH00209  321 IRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLESNMPIMTLILMFLSTSLTAAYSMRLSYFSLWGPN 400
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 396 NYY-VNLIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYL-ILLTLNMKIMVMKLIFFGILIGQFFY---FNSFKMNK 470
Cdd:MTH00209  401 SSKsLNSSFDQNKLNLKPMLVLTLGSITGGSVMSWVMVPSVNsVVLPWFLKLLPIMLILFGVLLMYMVLkknFFLIKGYK 480
                         490
                  ....*....|....
gi 1899176104 471 MGNFMSTMFYIEKI 484
Cdd:MTH00209  481 VNYFLSQMWFLPDL 494
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
6-461 1.06e-104

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 325.95  E-value: 1.06e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   6 TYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRF 85
Cdd:MTH00207   11 SYLLWFMSILMFPLSLYLMMCNKTILIEWEIFTISSSPINFTIILDPTGTLFSSTVLFISANVLLFAKTYMQEDKFLSRF 90
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  86 IILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSWNLM 165
Cdd:MTH00207   91 ISLVLLFVLSMNMLIFFPHLMILLLGWDGLGLVSFILVIYYQNPKSLGAGMITALTNRIGDVMLLLSIGWTLNQGHWSIT 170
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 166 VY---KFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF-LDYFNKYILLIS 241
Cdd:MTH00207  171 NMwqtDMNNYIALSIMIAAMTKSAQMPFSSWLPAAMAAPTPVSALVHSSTLVTAGVFLLIRFYPFLSsTYWFNPALLLTA 250
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 242 SLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGG 321
Cdd:MTH00207  251 SLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSHHHSQDLRTMGN 330
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 322 VMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNY--YV 399
Cdd:MTH00207  331 LTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESSLFYPHNSLMILMIFLATALTAAYSTRFTLAVLWSPNSSspYH 410
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899176104 400 NLIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMKIMVMKLIFFGILIGQFF 461
Cdd:MTH00207  411 HLEDEDKSLTTPMLLLTLGAITSGSALNWWLPTPQEEPILPLQYKLLPLLVVTLGALLAWLF 472
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
4-479 5.17e-86

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 277.99  E-value: 5.17e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   4 MFTYMLFMFTSWFFLLTLIIFFKSKL--IMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKF 81
Cdd:MTH00211   29 LHIKKAVKLSFFISLIPLLIFLDQGLetILTNWSWINLGLFSLNLSFKFDFYSIFFTSVALYVTWSILEFSLWYMSSEPN 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  82 MNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLT-IFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00211  109 INRFFKYLLLFLIFMLILVSANNLFQLFIGWEGVGIMSFLLISWWYGRSDANTAALQaVIYNRIGDIGLLLSMVWLLLNL 188
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 S-----WNLMVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDY-FN 234
Cdd:MTH00211  189 NsweisQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSPLFQNNQlIL 268
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 235 KYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQ 314
Cdd:MTH00211  269 GAVLLLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGLNNEQ 348
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 315 DIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSK 394
Cdd:MTH00211  349 DIRKMGGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILESMNGSYLNAWALLLTLLATSLTAAYSFRLIFLSLGGY 428
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 395 KNYYVN--LIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLIL-LTLNMKIMVMKLIFFGILIGQFFYFNSFKMNKM 471
Cdd:MTH00211  429 PRFLSLspINENYKLLKNPLKRLALGSILAGFIITSNLPPEKPEILsLPFLLKLMPLLVTIVGLLLGLELVNLTHKQLKT 508

                  ....*...
gi 1899176104 472 GNFMSTMF 479
Cdd:MTH00211  509 STLSFSNM 516
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
17-395 4.21e-77

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 254.69  E-value: 4.21e-77
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  17 FLLTLIIFF-----KSKLIMLEWMiySYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVIL 91
Cdd:COG1009    42 FVLSLLLFPavlggEVVVELYTWI--PVGSLGLDFGFRLDGLSLLMLLLVTGVGLLVHIYSIGYMSGDPGLARFFAYLLL 119
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  92 FVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNLMVYKF 169
Cdd:COG1009   120 FMAAMLGLVLSDNLLLLFVFWELVGLCSYLLIgFWYEKPSARRAARKAFLVTRVGDLGLLLgILLLGAIAGTLNFSELLA 199
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 170 NLLMLILLMLV----------AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIR-YNKFLFLDYFNKYIL 238
Cdd:COG1009   200 AAPTILSSPLLtlillllllgAFGKSAQFPLHFWLPDAMEGPTPVSALLHAATMVKAGVYLLARlSPLFALSPVWLTVVA 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 239 LISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRC 318
Cdd:COG1009   280 IIGAITALFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHA-TGTRDIRK 358
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1899176104 319 YGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIME-LIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKK 395
Cdd:COG1009   359 MGGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEaALEAGGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKP 436
ND5 MTH00004
NADH dehydrogenase subunit 5; Validated
1-391 4.76e-70

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 214398 [Multi-domain]  Cd Length: 602  Bit Score: 235.83  E-value: 4.76e-70
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSwffLLTLIIFFKS--KLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEG 78
Cdd:MTH00004   34 TTIKTTVKLAFLIS---LIPLTLFLNSgtESITTNWPWIFTTTFNIPISFKLDQYSLMFLPIALFVTWSILEFSTWYMAS 110
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  79 DKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQN-EKAYNAGMLTIFSNRIGDVG-ILLMITMG 156
Cdd:MTH00004  111 DPHITKFFKYLLIFLIAMLILITANNMFQLFIGWEGVGIMSFLLIGWWSGrAEANTAALQAIIYNRIGDIGlILSMAWLA 190
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 157 MMFGSWNL----MVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLfldY 232
Cdd:MTH00004  191 MTLNTWEIqqlfSPTQTPTLPLLGLILAATGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRTHPLL---Q 267
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 233 FNKYI----LLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIH 308
Cdd:MTH00004  268 NNQTAlticLCLGALTTLFAATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIH 347
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 309 NFNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIM 388
Cdd:MTH00004  348 NLNNEQDIRKMGGLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDTIIETLNTSYLNAWALLLTLLATSFTAAYSLRMIL 427

                  ...
gi 1899176104 389 FIL 391
Cdd:MTH00004  428 LVQ 430
ND5 MTH00208
NADH dehydrogenase subunit 5; Provisional
38-464 1.70e-69

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177251 [Multi-domain]  Cd Length: 628  Bit Score: 234.87  E-value: 1.70e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  38 SYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGL 117
Cdd:MTH00208   93 SNTLFNFSLSFIFDFYFILFFSVALFVTWSIIEFSHYYMSNDPNKNAFFRLLIIFLLNMLILTSSNNLFLLFIGWEGVGF 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 118 ISYCLIIYYQNEK-AYNAGMLTIFSNRIGDVGILLMITMGMM-FGSWNLM-VYKFNLLMLILLMLVAFT-------KSAQ 187
Cdd:MTH00208  173 LSFLLISWWTTRNdANSSALQAVIYNRIGDIGIILFLSLSLInFNSWNLNeILSLNNSNSFLINILLFGillaaagKSAQ 252
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 188 IPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFL-FLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALST 266
Cdd:MTH00208  253 FGLHPWLPAAMEGPTPVSALLHSSTMVVAGVFLLIRTSPLIsNSPWFLSLCLILGSLTALFAASTAISQHDIKKIIAYST 332
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 267 LSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFM 346
Cdd:MTH00208  333 TSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSLNNEQDLRKMGGLSFLLPVTSSCIILGSLALMGTPFL 412
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 347 SGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYY-VNLIKKESILVNFCMFILLMTIFFMGY 425
Cdd:MTH00208  413 AGFYSKDLILEAGLASISNLLSIILALIATLLTAVYSFRIIFFCFLNNPSFSpLSPISEENPNLTNPLLRLAIGTIISGW 492
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|
gi 1899176104 426 -LYFKIFNLNYLILLTLNmKIMVMKLIFFGILIGQFFYFN 464
Cdd:MTH00208  493 fFSNFVFNLPPLTLPLIL-KSLPLIVTIIGAAFSFSFLLS 531
NDH_I_L TIGR01974
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ...
30-426 4.40e-67

proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273905 [Multi-domain]  Cd Length: 609  Bit Score: 227.94  E-value: 4.40e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  30 IMLEWMiySYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTIL 109
Cdd:TIGR01974  63 SLFPWI--SVGGFQVDFGLRLDGLSLTMLVVVTGVGSLVHIYSIGYMAHDEGYSRFFAYLNLFTFSMLMLVLADNFLQLF 140
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 110 LGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNLMVYKFNLLMLILLMLVAFT---- 183
Cdd:TIGR01974 141 FGWEGVGLCSYLLIgFWYKKPSANNAAIKAFVVNRVGDFGLLLgIFLIFWYFGTLNFQEVFALAPGAFFSALTLIClllf 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 -----KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNkFLFLDYFN--KYILLISSLTMFMAGLIANYEY 256
Cdd:TIGR01974 221 igamgKSAQLPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARTS-PLFELSPTalYLVTIIGAITALFAATVALVQN 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 257 DFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFS 336
Cdd:TIGR01974 300 DIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAMHHEQDIRKMGGLRKKMPVTYITFLIG 379
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 337 LLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILV-NFCMFI 415
Cdd:TIGR01974 380 SLALIGFPGFAGFFSKDLILEAAFASGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHGKERHEADAHPHESPLVmLLPLIV 459
                         410
                  ....*....|.
gi 1899176104 416 LLMTIFFMGYL 426
Cdd:TIGR01974 460 LAVGSVFAGFF 470
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
8-395 3.81e-65

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 223.11  E-value: 3.81e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   8 MLFMFTSwfFLLTLIIFFK--------SKLIMLEWMiySYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGD 79
Cdd:PRK06590   36 TGLVGLS--ALLSLVVFFDfllgggraFSQTLWTWI--SVGDFDVDFGLRVDGLSATMLVVVTGVSFLVHIYSIGYMAHD 111
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  80 KFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGM 157
Cdd:PRK06590  112 EGYRRFFAYLNLFTFSMLMLVLSDNLLQLFFGWEGVGLCSYLLIgFWYKKPSAGAAAMKAFIVNRVGDVGLALgIFLLFA 191
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 158 MFGSWNL-----MVYKFNLLMLILLMLVAFT-------KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYN 225
Cdd:PRK06590  192 EFGSLNYdevfaAAPQFFGLGWSALTLICLLlfigamgKSAQFPLHTWLPDAMEGPTPVSALIHAATMVTAGVYLVARMS 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 226 K-FLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVG 304
Cdd:PRK06590  272 PlFELSPEALLFVAIVGAVTALFAAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAG 351
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 305 SFIHNFNSSQDIRCYGGVmyiypFKTMVLIFSL-----LCLMGFPFMSGYFSKDMIMELIFLNkMNLISMMLLIFSTIFT 379
Cdd:PRK06590  352 SVIHAMHHEQDIRKMGGL-----RKKMPVTYATfligtLALIGIPPFAGFFSKDEILEAAFAN-GHINLFVAGLVGAFLT 425
                         410
                  ....*....|....*.
gi 1899176104 380 VSYSIRLIMFILFSKK 395
Cdd:PRK06590  426 AFYSFRLIFLVFHGKE 441
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
18-389 9.58e-64

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 219.01  E-value: 9.58e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  18 LLTLIIFFKSKL--IMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVIS 95
Cdd:MTH00066   46 LIPLMIFINQGLesITTSFHWMNIFNFNINSSFKFDQYSIIFLPIALFVTWSILEFAIWYMHSDPKINRFFKYLLIFLIA 125
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  96 MYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVG-ILLMITMGMMFGSWNL----MVYKF 169
Cdd:MTH00066  126 MMILVTANNLFQLFIGWEGVGIMSFLLIgWWHARADANTAALQAVLYNRVGDIGlILSMAWLAMNTNSWELqqifLLNDN 205
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 170 NLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYI-LLISSLTMFMA 248
Cdd:MTH00066  206 STLPLLGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHPLLENNQTALTIcLCLGALTTLFT 285
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 249 GLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPF 328
Cdd:MTH00066  286 AACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSLNDEQDIRKMGGLQKALPI 365
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899176104 329 KTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMF 389
Cdd:MTH00066  366 TTSCLTIGSLALTGTPFLAGFFSKDAIIEAMNTSNLNSWALILTLIATSFTAVYSFRIIYF 426
ND5 MTH00095
NADH dehydrogenase subunit 5; Provisional
1-487 3.12e-63

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177158 [Multi-domain]  Cd Length: 527  Bit Score: 215.94  E-value: 3.12e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   1 MLIMFTYMLFMFTSWFFLLTLIIFFKSKLIMLEWMIysynsmkFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK 80
Cdd:MTH00095    1 MNILIFLILFFFFFLLLFILFLPFMKLNLFFLEWDF-------LSLKFNFYFNSLLFSLILLLVTLSVLVFSSYYMNGEL 73
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  81 FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFG 160
Cdd:MTH00095   74 NFNYFYFVLLIFVGSMFMLNFSNSVFTMLLSWDLLGISSFFLVLFYNNWDSNSGAMNTALTNRIGDFFIFLFFSGFIFSS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNLMVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYILLI 240
Cdd:MTH00095  154 YYFFSFSFFSSSMILMLLLTSFTKSAQFPFSSWLPKAMSAPTPVSSLVHSSTLVTAGLILLMNFSYLILNMNVMKIMLLI 233
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 241 SSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYG 320
Cdd:MTH00095  234 GLFTMFFSSLSALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNFGQQDGRNYS 313
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 321 GVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKnyyvN 400
Cdd:MTH00095  314 NNGNLPMFIQLQLLVTLFCLCGLMFTSGMVSKELILELFFFNNYMIFFSLMFFFSVFLTFGYSYRLWKSFFLSFS----K 389
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 401 LIKKESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMKIMVMKLIFFGILIGQFFYFNSFKMNKMGNFMSTMFY 480
Cdd:MTH00095  390 VVNVYSSSVLMNFLSLMLVFFSVFFLWWLNFNLLNLPSLFLYLDFYVPLFYLFMIMLFSFFFFKLLFKELKYKFFVDYFA 469

                  ....*..
gi 1899176104 481 IEKIYQY 487
Cdd:MTH00095  470 KNVIYKL 476
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
14-468 6.18e-60

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 208.78  E-value: 6.18e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  14 SWFFLLTLIIFFKSKLIMLE-WMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILF 92
Cdd:MTH00020   41 SWSFLIFYEILFNSSTTYIKlWRWLDSDLLTVYFGLQFDGLVAIMLLVVTTVSTLVHIFSTAYMRGDPHIPRFMSYLSLF 120
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  93 VISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGS------WNL 164
Cdd:MTH00020  121 TFLMVVLVTSDNYLQLFIGWEGVGLCSYLLInFWLTRIEANKAAIKAMLVNRVGDIGLLLaMFLLWDRFGSldfssvFNM 200
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 165 MVYKFNLLMLILLMLV---AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYIL-LI 240
Cdd:MTH00020  201 VVSAPSSDITLICLFLfigAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtIV 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 241 SSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYG 320
Cdd:MTH00020  281 GSLTVFFAATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHALSDEQDMRKMG 360
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 321 GVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVN 400
Cdd:MTH00020  361 GLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGQYYLIFAYWLGCFSALLTAFYSIRLIYLTFLSNTNLKKA 440
                         410       420       430       440       450       460       470
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899176104 401 L---IKKESILVNFCMFILLMTIFFMGYLYFKI---FNLNYLILLTLNMKIMVMKLIFFGILIGQFFYFNSFKM 468
Cdd:MTH00020  441 VffhLHEGDWNLLLPLGILALGSIFVGYLAKEMiwsFQITLPPIVPLSIKLLPVFLSLGGIGLVIILYFYSSKT 514
ND5 MTH00137
NADH dehydrogenase subunit 5; Provisional
16-390 6.48e-57

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214428 [Multi-domain]  Cd Length: 611  Bit Score: 200.83  E-value: 6.48e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  16 FF--LLTLIIFFKSKL----IMLEWMiysyNSMKFSFLIYL--DFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFII 87
Cdd:MTH00137   48 FFvsLLPLFLFLNQGAetiiTNWNWM----NTLTFDINISFkfDHYSIIFTPIALYVTWSILEFASWYMHADPNMNRFFK 123
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  88 LVILFVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVG-ILLMITMGMMFGSWNL- 164
Cdd:MTH00137  124 YLLIFLIAMIILVTANNMFQLFIGWEGVGIMSFLLIgWWYGRADANTAALQAVIYNRVGDIGlILAMAWMATNLNSWEIq 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 165 ----MVYKFNLLMLILLMLVAFT-KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLfldYFNKYILL 239
Cdd:MTH00137  204 qifaLSKDFDLTLPLLGLILAATgKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGIFLLIRLSPLM---ENNQTALT 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 240 IS----SLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQD 315
Cdd:MTH00137  281 TClclgALTTLFTATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSLNDEQD 360
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899176104 316 IRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFI 390
Cdd:MTH00137  361 IRKMGGLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIIEALNTSHLNAWALTLTLIATSFTAVYSLRVVFFV 435
ND5 MTH00108
NADH dehydrogenase subunit 5; Provisional
3-391 3.64e-56

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177170 [Multi-domain]  Cd Length: 602  Bit Score: 198.54  E-value: 3.64e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   3 IMFTYMLFMFTswfflLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFM 82
Cdd:MTH00108   40 ISYAFIISLIP-----TMMFIHSGQEMIISNWHWMTIQTLKLSLSFKLDYFSMIFIPVALFVTWSIMEFSMWYMHSDPNI 114
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  83 NRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMM-FG 160
Cdd:MTH00108  115 NRFFKYLLLFLITMLILVTANNLFQLFIGWEGVGIMSFLLIgWWYGRTDANTAALQAILYNRIGDIGFILAMAWFLLnLN 194
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 161 SWNL-----MVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRynkFLFLDYFNK 235
Cdd:MTH00108  195 SWDLqqifmLNPNNSNLPLMGLLLAATGKSAQFGLHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIR---FHPLMENNK 271
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 236 YILLI-----SSLTMFMAgLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNF 310
Cdd:MTH00108  272 TIQTLtlclgAITTLFTA-ICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNL 350
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 311 NSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFI 390
Cdd:MTH00108  351 NDEQDIRKMGGLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIEAANTSYTNAWALLITLIATSLTAAYSTRIIFFA 430

                  .
gi 1899176104 391 L 391
Cdd:MTH00108  431 L 431
ND5 MTH00210
NADH dehydrogenase subunit 5; Provisional
45-489 1.41e-54

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177253 [Multi-domain]  Cd Length: 616  Bit Score: 194.46  E-value: 1.41e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  45 SFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLII 124
Cdd:MTH00210   73 YFGLQFDSLTSTMLIVITSVSALVHIYSTGYMSGDPHIPRFMSYLSLFTFLMIVLVTSDNYVQLFIGWEGVGLCSYLLIN 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 125 YYQNE-KAYNAGMLTIFSNRIGDVGILLMITM----------GMMFGSWNLMVYKFNLLMLILLMLV-AFTKSAQIPFTL 192
Cdd:MTH00210  153 FWLTRiKANKAAIKAMLINRVGDIGLVLAMIMilkefgtlefSTISSLLVTNINKESLTIICLLLFIgAVGKSAQLGLHT 232
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 193 WLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNK-FLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLS 271
Cdd:MTH00210  233 WLPDAMEGPTPVSALIHAATMVTAGVFLIIRSGPlFEGSPLALTIVTILGALTAFFAATVGVVQNDLKKVIAYSTCSQLG 312
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 272 LMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPFK-TMVLIFSLlCLMGFPFMSGYF 350
Cdd:MTH00210  313 YMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAVSDEQDMRKMGGLIKSIPFTyVMILIGSL-SLMGFPYLTGFY 391
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 351 SKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILF----SKKNYYVNlIKKESILVNFCMFILLMTIFFMGYL 426
Cdd:MTH00210  392 SKDLILELTYDKYYIAFAYWLGSFSALLTAFYSIRLIYLTFItntnSKKEVFIG-VHESSWNITFPLLLLAFGSIFVGYL 470
                         410       420       430       440       450       460
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899176104 427 YFKIFNLNYLILLTLN-MKIMVMKLIFFGILIGQFFYFNSFKMNKMGNFMSTMFYIEKIYQYYD 489
Cdd:MTH00210  471 GKEVVLSNVIPPIVPNsIKMIPLLFSLLGALLAFVIYNSMVFLIKISRRGVSIRLYHVIYTFLN 534
ND5 MTH00063
NADH dehydrogenase subunit 5; Provisional
9-497 1.33e-47

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214414 [Multi-domain]  Cd Length: 522  Bit Score: 173.53  E-value: 1.33e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   9 LFMFTSWFFLLTLIIFFKSKLIMLEWMIYSynsmkFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIIL 88
Cdd:MTH00063    7 LLLCLLIFFLFLVGVSSSVSLNFLSFGGYS-----WLINFDFDYVTFGVLLMLLICFYYSLLYTFHYFGGSYASFLLNKL 81
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  89 VILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSWNLmvyk 168
Cdd:MTH00063   82 IVLFVLVMGILVLTGDFLSTLIFWEYLGVVSFFLILFYDNFLSLRASVVTLVSSRFGDVCLFLLIGLSCWGGSGSF---- 157
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 169 fnlLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYILLISSLTMFMA 248
Cdd:MTH00063  158 ---LCCLFFFLIVFTKSASFPFISWLLEAMRAPTPVSSLVHSSTLVAAGVWFVMRYDYLLGFSWLSIFFSVLLLLTIFIT 234
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 249 GLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVMYIYPF 328
Cdd:MTH00063  235 GVSSLFFSDLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVMSGSGGSQSSNCVYSSILYGSW 314
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 329 KTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMfILFSKKNYYVNLIKKESIL 408
Cdd:MTH00063  315 NLFYLFLLVLGLSGVPFIGVFFSKHFLLSSFSSVVFNVSLLLVVILCVFLSYLYSFRLCL-ILFGVKSSLSSGVRFLFFN 393
                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 409 VNFCMFILLmtifFMGYLYFKIFNLNYLILLTLNMKIMVmkLIFFGILIGQFFYFNSFKMNKMGNFMSTMFYIEKIYQYY 488
Cdd:MTH00063  394 SGLMVFLWL----FINYYVFLLLDEVVYLGVFISLVLLL--VQLLGLLVGVLFYDSNLFSNWSSSLFGCDNLVELFYELF 467

                  ....*....
gi 1899176104 489 DIPLNLIML 497
Cdd:MTH00063  468 YSILDLVSL 476
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
51-363 6.02e-44

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 165.52  E-value: 6.02e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  51 DFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNE- 129
Cdd:MTH00032   79 DTLSVTMLLVISSISTLVHIYSTSYMSDDPHVPRFLCYLSLFTFLMMVLVTSDNYLQLFIGWEGVGVCSYLLVAFWTTRi 158
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 130 KAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNLMVYKFNLLML------------------------ILLMLVAFTK 184
Cdd:MTH00032  159 QANKAAIKAIVVNRVGDVGVILgMVLIYKTIGSLDFLTFNGGSVGSgimdrgyygggayesplapfaiigILLLIGCIGK 238
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 185 SAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYILLI-SSLTMFMAGLIANYEYDFKKIIA 263
Cdd:MTH00032  239 SAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIITIfGALTAFFAATVGLVQNDLKKVIA 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 264 LSTLSQLSLMMSILSL-GFWEMAFFHLVIHALFKSLMFLCVGSFIHNFN-SSQDIRCYGGVMYIYPFKTMVLIFSLLCLM 341
Cdd:MTH00032  319 YSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTvDEQDMRKMGGLIHSIPFTYTMMLIGSFSIM 398
                         330       340
                  ....*....|....*....|..
gi 1899176104 342 GFPFMSGYFSKDMIMELIFLNK 363
Cdd:MTH00032  399 GLPYLTGFYSKDLILELTYSGR 420
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
50-360 1.30e-42

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 161.73  E-value: 1.30e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  50 LDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQN 128
Cdd:PRK07376   89 IDPLGAVMLVLVTTVALLVMIYSDGYMAHDPGYVRFFAYLSLFSSSMLGLVISPNLVQIYVFWELVGMCSYLLVgFWYDR 168
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 129 EKAYNAGMLTIFSNRIGDVGILLmitmGMMFGSWNLMVYKFNLLMLILLMLVA--------------------FTKSAQI 188
Cdd:PRK07376  169 KGAADAAQKAFVVNRVGDFGLLL----GILGLFWATGSFDFDGIADRLSELVSsgavsgwlalllcilvflgpMAKSAQF 244
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 189 PFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIR-YNKFLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTL 267
Cdd:PRK07376  245 PLHVWLPDAMEGPTPISALIHAATMVAAGVFLVARmYPVFEQFPAVMTVIAWTGAITAFLGASIALTQNDIKKGLAYSTI 324
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 268 SQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNS--------SQDIRCYGGVMYIYPFKTMVLIFSLLC 339
Cdd:PRK07376  325 SQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEvvghdpvlAQDMRLMGGLRKYMPITAITFLIGCLA 404
                         330       340
                  ....*....|....*....|.
gi 1899176104 340 LMGFPFMSGYFSKDMIMELIF 360
Cdd:PRK07376  405 ISGIPPFAGFWSKDEILGAAF 425
2a6301s01 TIGR00940
Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial ...
3-394 1.94e-38

Tmonovalent cation:proton antiporter; This family of proteins constists of bacterial multicomponent K+:H+ and Na+:H+ antiporters. The best characterized systems are the PhaABCDEFG system of Rhizobium meliloti which functions in pH adaptation and as a K+ efflux system and the MnhABCDEFG system of Staphylococcus aureus which functions as a Na+:H+ antiporter. [Transport and binding proteins, Cations and iron carrying compounds]


Pssm-ID: 273353 [Multi-domain]  Cd Length: 793  Bit Score: 150.38  E-value: 1.94e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   3 IMFTYMLFMFTSWFFLLTLIIFFkskLIMLEWMIYSYN------------SMKFSFLIYLDFYSMMFLMLVSLISMIVLI 70
Cdd:TIGR00940  17 ILYPSDQRIHIGWFVLAIPLVCF---LYTLGLYPYTASggvlhytidwvpELGLNFTLYMDGLALLFSLLITGIGVLVVL 93
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  71 YSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYY-QNEKAYNAGMLTIFSNRIGDVGI 149
Cdd:TIGR00940  94 YSIYYLSKEEPLPNFYAYLLAFMGAMLGVVLSDNLILLYVFWELTSIVSFLLISYWhHRAHSRYGAQKSLTITVFGGLAM 173
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 150 LL-MITMGMMFGSWNL----------MVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGV 218
Cdd:TIGR00940 174 LGgLILLGKITGSFSIdaviasadaiRNSPLFGTAMVLVLLGAFTKSAQFPFHIWLPDAMEAPTPVSAYLHSATMVKAGL 253
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 219 YLLIRYNK-FLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLG------------FWEMA 285
Cdd:TIGR00940 254 YLLARFTPvFAGTEAWFWIVGLAGLITLLWGSYFAIFQQDLKGILAFSTISQLGLIMVLLGLGspsyhyqgddskIYALA 333
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 286 F----FHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIF- 360
Cdd:TIGR00940 334 AvaavFHLINHATFKGSLFMAAGIIDHE-TGTRDIRKLGGLFHIMPITFTLAMIASAAMAGVPPFNGFLSKEMFFAEAIt 412
                         410       420       430       440
                  ....*....|....*....|....*....|....*....|..
gi 1899176104 361 LNKMNLISM--------MLLIFSTIFTVSYSIRLIMFILFSK 394
Cdd:TIGR00940 413 AHLVNPFDTvtlgylfpYVATVASVFTFVYSLRFIHGVFFGR 454
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
44-390 9.94e-38

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 144.13  E-value: 9.94e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  44 FSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLI 123
Cdd:COG0651    68 FGIVLVADRLSALFLLLTALVALAVLLYSIGYMRHERRGRRFYPLFLLLLAGMNGAFLTGDLFNLFVFFEVMLLASYGLV 147
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 124 IYYQNEKAYNAGMLTIFSNRIGDVGILL-MITMGMMFGSWNL--------MVYKFNLLMLILLMLVAF-TKSAQIPFTLW 193
Cdd:COG0651   148 ALGGTKEALRAGLKYLILNLVGSALFLLgVGLLYGATGTLNMadlaarlaELDPGLLLAAFALLLVGFgIKAALFPLHFW 227
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 194 LPAAM-MAPTPVSSLVhSSTLVTAGVYLLIRYNKFLF----LDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLS 268
Cdd:COG0651   228 LPDAYpAAPSPVSALL-SGLLTKVGVYAILRVLTLLFgadpALFLGTLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVS 306
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 269 QLSLMMSILSLG---FWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSqDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPF 345
Cdd:COG0651   307 QIGYILLGLGLGtplGLAGALFHLLNHALAKALLFLAAGAIERATGTR-DLDKLGGLGKRMPLTAAAFLIGALALAGLPP 385
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1899176104 346 MSGYFSKDMIMELIFLNKMnLISMMLLIFSTIFTVSYSIRLIMFI 390
Cdd:COG0651   386 LSGFVSKWLLLQAALEAGA-WLLAAVLLLSSLLTLAYFVRIFGRA 429
PRK12650 PRK12650
DUF4040 family protein;
45-387 1.81e-37

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 147.88  E-value: 1.81e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  45 SFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLII 124
Cdd:PRK12650   72 NLALRADALSLFFALLALVIGAVVFIYSARYLPRKKGNTSFYLLMTAFMAAMLLLVLADDVVVLFVAWELVSLASFFLIA 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 125 YyQNEKAYNAGMLTIFSNRIGdvGILLMITMGMMF---GSWNLMVY----------KFNLLMLILLMLVAFTKSAQIPFT 191
Cdd:PRK12650  152 R-SGSGGEAGSIRTLILTFFG--GLTLLAAVAIAAtqtGTTSLSGIlhsdvwaekpGLTTVVAVLIAVAAFTKSAQFPFH 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 192 LWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKfLFLDYFNKYILLISS--LTMFMAGLIANYEYDFKKIIALSTLSQ 269
Cdd:PRK12650  229 FWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSP-VFHDVAVWNWLLIIVgmITALMGAVFAVQKTDLKKLTAYSTVSQ 307
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 270 LSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFM 346
Cdd:PRK12650  308 LGWIVATIGVGTpfaLTAAVVHTLAHALFKSSLFMLIGVVDHQ-AGTRDIRRLGSLWRRMPFTFVSVTIAALSMAAVPPL 386
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*
gi 1899176104 347 SGYFSKDMIMELIFLNKMNLISMMLLI----FSTIFTVSYSIRLI 387
Cdd:PRK12650  387 FGFVSKEGMLTAFLEAPGGNAGVVLLLvgaaLGAVFTFAYSARLV 431
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
41-377 1.90e-36

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 144.29  E-value: 1.90e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  41 SMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISY 120
Cdd:PRK12647   53 SLGVNLSFLLDGLSLTFALLITGIGTLIVLYAGGYLKGHPDLGRFYSYILLFMASMLGLVLSDNLITLFVFWELTSITSF 132
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 121 CLIIY-YQNEKAYNAGMLTIFSNRIGdvGILL---MITMGMMFGSWNL-MVYKFN---------LLMLILLMLVAFTKSA 186
Cdd:PRK12647  133 LLIGFnHEREAARRAALQALLVTGGG--GLALlagLILLGNVTGTYSLsELLASGdvirehplyLAILLLVLGGAFTKSA 210
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 187 QIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDY-FNKYILLISSLTMFMAGLIANYEYDFKKIIALS 265
Cdd:PRK12647  211 QFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTPlWQTILPLFGGLTMLTGALLAVRQTDLKLILAYS 290
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 266 TLSQLSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMG 342
Cdd:PRK12647  291 TVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHE-TGTRDITKLGGLRRAMPITAAAALLAALSMAG 369
                         330       340       350
                  ....*....|....*....|....*....|....*
gi 1899176104 343 FPFMSGYFSKDMIMELIFlnKMNLISMMLLIFSTI 377
Cdd:PRK12647  370 LPPLFGFLAKELIYEALL--EAPLWSLILTVAAVL 402
PRK12646 PRK12646
DUF4040 family protein;
13-396 8.46e-34

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 136.42  E-value: 8.46e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  13 TSWFFLLTLIIFFKSKL--IMLEWMiysyNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK-FMNRFIILV 89
Cdd:PRK12646   41 SSIYFLIQIPSVAKLQYlsTSIPWM----KTLDINLDLRLDGLSLMFSLIISLIGIAVFFYATQYLSSRKdNLPRFYFYL 116
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  90 ILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAG-----MLTIFSNRIGDVG-ILLMITMG------M 157
Cdd:PRK12646  117 TLFMFSMIGIVLSDNTILMYVFWELTSVSSFLLISYWYNNGDSQFGaiqsfMITVFGGLALLVGfIMLYIMTGtnniteI 196
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 158 MFGSWNLMVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYI 237
Cdd:PRK12646  197 LGQADHIKNHGLFIPMIFMFLLGAFTKSAQFPFHIWLPRAMAAPTPVSAYLHSATMVKAGIFLLFRFTPLLGLSNMYIYI 276
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 238 LLISSL-TMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLG-------------FWEM----AFFHLVIHALFKSLM 299
Cdd:PRK12646  277 VTFVGLiTMLFGSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasIYVFvlfaALFHLMNHAIFKCAL 356
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 300 FLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIF----LNKMNLISMMLLIF- 374
Cdd:PRK12646  357 FMGVGIIDHE-AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEMFLDALTqtgqLSQFSLISMIIIVFi 435
                         410       420
                  ....*....|....*....|....*
gi 1899176104 375 ---STIFTVSYSIRLIMFILFSKKN 396
Cdd:PRK12646  436 gviASIFTFTYALYMVKEVFWGKYD 460
PRK12645 PRK12645
monovalent cation/H+ antiporter subunit A; Reviewed
13-395 1.83e-33

monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237155 [Multi-domain]  Cd Length: 800  Bit Score: 135.44  E-value: 1.83e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  13 TSWFFL---LTLIIFFKSKLIM----------LEWMiysyNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGD 79
Cdd:PRK12645   30 TGWFVLpvpVVLFIYFLSLIPTtmsgntvmktLPWI----PSLGINFTLYVDGLSLLFALLITGIGSLVVLYSIYYLSKK 105
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  80 K-FMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAG-----MLTIFSNRIGDVGILLMI 153
Cdd:PRK12645  106 KeQLGNFYVYLLLFMGAMLGVVLSDNLIVLYLFWELTSISSFLLISYWYEREASRYGaqksmLITVFGGLSMLGGFILLY 185
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 154 TMG-------MMFGSWNLMVYKFNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNK 226
Cdd:PRK12645  186 IMTgsfsireMIANADEIQNSPLFIPAMILILLGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGIYLVARFTP 265
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 227 -FLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLG------------FWEMAF----FHL 289
Cdd:PRK12645  266 iFAGSQVWFWTVTLVGLITLFWGSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGaaslhyqgddskIYAAAItaaiFHL 345
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 290 VIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIF----LNKMN 365
Cdd:PRK12645  346 INHATFKGSLFMIVGIVDHE-TGTRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFESMLnateANLFS 424
                         410       420       430
                  ....*....|....*....|....*....|....*
gi 1899176104 366 LISMMLLI-----FSTIFTVSYSIRLIMFILFSKK 395
Cdd:PRK12645  425 LDTWGVLFpviawVASVFTFVYSIIFIFKTFFGKY 459
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
41-385 5.89e-33

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 134.28  E-value: 5.89e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  41 SMKFSFliYLDFYSMMFLMLVSLISMIVLIY-SIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLIS 119
Cdd:PRK12644   65 GLDLAF--RLDALAALMSLLVLGVGALVLLYcARYFDDDEPRLGRFAAELVAFAGAMFGLVTSDNLLLLYVFWELTTVLS 142
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 120 YCLIIYYQNEK-----AYNAGMLTIFSNRIGDVGILLMitmGMMFGSWNL--MVYKFNLLMLILLMLV-----AFTKSAQ 187
Cdd:PRK12644  143 FLLIGHYAERAasrraALQALLVTTAGGLAMLVGIIIL---GQAAGTYRLseLLADPPTGPAVSVAVVlilvgALSKSAI 219
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 188 IPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNK-FLFLDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALST 266
Cdd:PRK12644  220 VPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVARLAPgFADVPVWRPTVLVLGLATMLLGGWRALRQHDLKLILAYGT 299
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 267 LSQLSLMMSILSLGFWEMAFFHL---VIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGF 343
Cdd:PRK12644  300 VSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS-TGTRDIRKLSGLGRRQPVLAVVAALAAASMAGL 378
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1899176104 344 PFMSGYFSKDMIME-LIFLNKMNLISMMLLI---FSTIFTVSYSIR 385
Cdd:PRK12644  379 PPLLGFVAKEAALEaVLHDGALGPAGPVVLAgivLGSILTVAYSLR 424
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
102-375 2.37e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 125.89  E-value: 2.37e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 102 SPSFLTILLGWDGLGLISYCLIIYY-QNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSWNLMVYKFNLLML------ 174
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWgKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssg 80
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 175 ----ILLMLVAF-TKSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLFLDY--FNKYILLISSLTMF 246
Cdd:pfam00361  81 llllFLLILVGFlFKSAQVPFHTWLPDAYEgAPTPVSALL-AATLVKAGGYGLIRRSLLYLPSSpfIQQILLILAIISML 159
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 247 MAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQDIRCYGGVM 323
Cdd:pfam00361 160 LGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTiygIQAAIFHLLTHGLFSAGLFLCAGSVIYRRVHTRNIRDYGGLA 239
                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1899176104 324 YIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFS 375
Cdd:pfam00361 240 KTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
PRK12648 PRK12648
putative monovalent cation/H+ antiporter subunit A; Reviewed
45-387 4.70e-32

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237157 [Multi-domain]  Cd Length: 948  Bit Score: 131.47  E-value: 4.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  45 SFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLII 124
Cdd:PRK12648   69 NLSLRLDGLAWLFALLILGIGLLVVLYARYYLSPADPVPRFFSFLLLFMGAMLGIVLSGNLILLVVFWELTSLSSFLLIG 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 125 Y-YQNEKA-YNAGM-LTIfsnrIGDVGILL---MITMGMMFGSWNLMV-------------YkfnLLMLILLMLVAFTKS 185
Cdd:PRK12648  149 YwHHRADArRGARMaLTV----TGAGGLALlagVLLLGHIVGSYDLDVvlaagdlirahplY---PPALVLILLGAFTKS 221
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 186 AQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRynkfLF--LDYFNKYILLISS---LTMFMAGLIANYEYDFKK 260
Cdd:PRK12648  222 AQFPFHFWLPHAMAAPTPVSAYLHSATMVKAGVFLLAR----LWpvLAGTEEWFWIVGGaglITLLLGAYFALFQHDLKG 297
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 261 IIALSTLSQLSLMMSILSLGFwEMA----FFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFS 336
Cdd:PRK12648  298 LLAYSTISHLGLITLLLGLGS-PLAavaaIFHIINHATFKASLFMAAGIIDHE-TGTRDMRRLSGLRRLMPITATLAMVA 375
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1899176104 337 LLCLMGFPFMSGYFSKDMIM-ELIFLNKMNLISMMLLIFST---IFTVSYSIRLI 387
Cdd:PRK12648  376 AAAMAGVPLLNGFLSKEMFFaETLDTHLLGSLDWLLPVAATlagAFSVAYSLRFI 430
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
7-355 7.59e-30

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 122.39  E-value: 7.59e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104   7 YMLFMFTSWFFLLTLII---FFKSKLIMLEWMIYSYNSMKFsFLIYLDFYSMMFLMLVSLISMIVLIYSIYYME------ 77
Cdd:PRK06525   28 ELGVLFAALTTLCMLSLayaFYQAGKVAVTLTLVNLGDVAL-FGLVIDPVSVLIGFVVVLLGLLVTLYSTGYMSpgnreh 106
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  78 -GDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGilLMITMG 156
Cdd:PRK06525  107 pVHEGTGRYYAFLLLFIGAMAGLVYSSTLLGLLLFFEITGLCSWALISYYQSPKALRSALKALLITHIGSLG--LYLAAA 184
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 157 MMF---GSWNLMVYK-----FNLLMLILLMLVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYnkFL 228
Cdd:PRK06525  185 TLFlqtGTFALSALSglhgsLKYLVFLGILFAAWGKSAQLPFYSWLPDAMEAPTPASAYLHAASMVKVGVYIFARA--IQ 262
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 229 FLDYFNKYI----LLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFW--EMAF----FHLVIHALFKSL 298
Cdd:PRK06525  263 SMGPIPHVIgyvgAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMFFGLSLAILgsRLALegsiAYIFNHAFAKSL 342
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1899176104 299 MFLCVGSFIHNFnSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMI 355
Cdd:PRK06525  343 FFLVAGALSYSC-GTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPI 398
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
41-395 1.21e-28

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 120.70  E-value: 1.21e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  41 SMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISY 120
Cdd:PRK12649   69 SAGVEFSIYADGLAVLIGLIASGIGVIIMSYSNGYMSHKEDLPRYYQYLLLFMGSMIGMVFSGNTIQLFIFWELTSITSF 148
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 121 CLIIYYQN--EKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSW-------------NLMVYKFNLLMLILLMLVAFTKS 185
Cdd:PRK12649  149 MLIGYWRHrpESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYdiatilqdselieNIKGHPLFLITLILIFIGAAAKS 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 186 AQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKflFLDYFNKYILLISS---LTMFMAGLIANYEYDFKKII 262
Cdd:PRK12649  229 AQGPFYIWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHP--IFSGTEAWFILVSGtgmITMVLAGFLAFRQTDIKAIL 306
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 263 ALSTLSQLSLMMSILSLGFWE-------MAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIF 335
Cdd:PRK12649  307 AYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAHE-AATRDIRKLGGLRKEMPITFIVASI 385
                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1899176104 336 SLLCLMGFPFMSGYFSKDMIMEL------IFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKK 395
Cdd:PRK12649  386 AALAMAGIPPLNGFLSKEMFYETsvemgaLIGGPFTIIIPAVAVLGGVFTFAYSIKLIDGIFLGER 451
ndhF CHL00025
NADH dehydrogenase subunit 5
33-355 1.16e-26

NADH dehydrogenase subunit 5


Pssm-ID: 214338 [Multi-domain]  Cd Length: 741  Bit Score: 114.60  E-value: 1.16e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  33 EWMIYSYNSMKFSFLIylDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGW 112
Cdd:CHL00025   74 SWTINNDFSLEFGYLI--DPLTSIMLILITTVGILVLIYSDNYMSHDQGYLRFFAYLSFFNTSMLGLVTSSNLIQIYIFW 151
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 113 DGLGLISYCLI-IYYQNEKAYNAGMLTIFSNRIGDVGILLMItMGM--MFGSW----------NLMVYkfNLLMLILLML 179
Cdd:CHL00025  152 ELVGMCSYLLIgFWFTRPIAANACQKAFVTNRVGDFGLLLGI-LGFywITGSFefrdlfeifnNLIYN--NEVNLLFATL 228
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 180 VAF-------TKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIR-YNKFLFLDYFNKYILLISSLTMFMAGLI 251
Cdd:CHL00025  229 CAFllflgpvAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARlLPLFIVIPYIMNLISLIGIITALLGATL 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 252 ANYEYDFKKIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNF--------NSSQDIRCYGGVM 323
Cdd:CHL00025  309 ALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMepivgyspDKSQNMVLMGGLR 388
                         330       340       350
                  ....*....|....*....|....*....|..
gi 1899176104 324 YIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMI 355
Cdd:CHL00025  389 KYMPITKTTFLLGTLSLCGIPPLACFWSKDEI 420
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-427 3.36e-23

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 103.13  E-value: 3.36e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  50 LDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNE 129
Cdd:PRK12667   80 VDLLGALLGLLTALVMFLILIYSYWYLEHESGPEWYYTLLLGLEAGMLGILLTGDAFNLFVMLEVLSISAYGLVAYYRDR 159
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 130 K-AYNAGMLTIFSNRIGD-------------VGILLMI-----TMGMMFGSWNLMV--YKFNLLMLILLMLVAFT-KSAQ 187
Cdd:PRK12667  160 GdAVEAAIKYALIGAVGTtlyflalaflyatFGTLNMAdlsakIRGLSFPLTGGLAgnPPLALGVALALALWAFTiKAAI 239
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 188 IPFTLWLPAAM-MAPTPVSSLVhSSTLVTAGVYLLIRYNKFLF---------LDYFNKYILLISSLTMFMAGLIANYEYD 257
Cdd:PRK12667  240 FPNHFWLPDAHpAAPSPVSAML-SGLVVNVGAYAIIRFLYTIFgispslidfRAALSPILIILGAVSAIIGALMMVVQKD 318
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 258 FKKIIALSTLSQLSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNFNsSQDIRCYGGVMYIYPFKTMVLI 334
Cdd:PRK12667  319 VKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAAG-TRDIDELAGLGRKMPIASFAFL 397
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 335 FSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSiRLIMFILFSKKNYYVNLIKKESILVNFCMF 414
Cdd:PRK12667  398 IGALSLVGIPPLNGFFSKLLLFNALLESGFYLPALVLLIASAISLVGYF-RAWYSLFFGKPKSGEEVEHKESPSMSVVIL 476
                         410
                  ....*....|...
gi 1899176104 415 ILLMTIFFMGYLY 427
Cdd:PRK12667  477 VLALAVLILGILA 489
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-394 4.08e-22

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 99.57  E-value: 4.08e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  50 LDFYSMMFLMLVSLISMIVLIYSIYYmeGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNE 129
Cdd:PRK08375   75 ADSLSALFLLVTSILAIAALLYAIGY--GEHRQTRFYALFLLLLAGLLGALLTADLFNLFVFLEIMSLSSYALVAMGGDR 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 130 KAYNAGMLTIFSNRIGdvGILLMITMGMMF---GSWNLMVYKfNLLMLILLMLVAF--------TKSAQIPFTLWLPAAM 198
Cdd:PRK08375  153 RALAAARKYLIVGLIG--STFLLIGVGLLYgvtGTLNMADLA-GALAENPTVVTAFgfvllalaLKAAVFPLHTWLPRAY 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 199 MAPTPVSSLVHSSTLVTAGVYLLIR-YNKFLFLDYFNKYILL-----ISSLTMFMAGLIANYEYDFKKIIALSTLSQLS- 271
Cdd:PRK08375  230 PAAPPVVTALLSGLVTKVAVYALIRiYFTVFGGDFRFALGLGwllavLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGy 309
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 272 --LMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQdIRCYGGVMYIYPFkTMVLIFSL-LCLMGFPFMSG 348
Cdd:PRK08375  310 ilLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTRR-LSELSGLGRRMPL-TAAAFAVAsLSLIGVPPTSG 387
                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 1899176104 349 YFSKDMIMELIfLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSK 394
Cdd:PRK08375  388 FVSKWYLVVGA-VEAGQWLVLAVLLASSLLALLYFLRIWYRAFFGP 432
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
47-305 3.09e-20

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 93.99  E-value: 3.09e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  47 LIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYY 126
Cdd:PRK08168   64 WLEVSGLGLVMAALVQLLGWVIGRFSHRYLQGEPGQRRYVRALAGVLAAVHLLVLSDHLLVLIAAWAAISLALHRLLCFY 143
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 127 QNEKAynaGMLTIFSNRIGD--VGILLMITMGMMF---GSWNLMVYKFNLLMLILLMLVAFT----------KSAQIPFT 191
Cdd:PRK08168  144 PDRPF---ARLAAHKKFIADrlAELLLLAAAALAYlevGSLSLSALWAHLAAQGASPSLQAAalllvlavilKTAQLPVH 220
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 192 LWLPAAMMAPTPVSSLVHSStLVTAGVYLLIRYNKFLFLDYFNKYILLI-SSLTMFMAGLIANYEYDFKKIIALSTLSQL 270
Cdd:PRK08168  221 GWLIQVMEAPTPVSALLHAG-VVNLGGFVLIRFAPLLEQAPPARWLLVLvGLATAVLAGLVMLTRISIKVRLAWSTVAQM 299
                         250       260       270
                  ....*....|....*....|....*....|....*
gi 1899176104 271 SLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGS 305
Cdd:PRK08168  300 GFMLLECGLGLYELALLHLVAHSLYKAHAFLSASE 334
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
17-360 2.64e-19

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 91.72  E-value: 2.64e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  17 FLLTLIIFFKSKLIMLEWMIYSynsmKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYY---MEGDKFMNRFIILVILFV 93
Cdd:PRK08667   46 FAGSLQLFTGNPLDIPLWGIAP----GLDITFHIDRLAAFFIILIGLVSLCVAIYSLGYnehMSSNERANLLSALTALFI 121
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  94 ISMYLMILSPSFLTILLGWDGLGLISYCLIIY-YQNEKAYNAGMLTIFSNRIGDVGILLM-ITMGMMFGSWNLMVYKFNL 171
Cdd:PRK08667  122 LSMLGVVASANTFSFLFFWEIMALSSFFLVMNdYQEEETQRAGIFYFVMTQLSTVFLMLGiIVLFIQTGSFELSPLGASA 201
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 172 LMLILLMLVAF----TKSAQIPFTLWLPAAMMA-PTPVSSLVhSSTLVTAGVYLLIRYNKFLFLD--YFNKYILLISSLT 244
Cdd:PRK08667  202 GILSLVFLLLFlgfgIKAGIIPFHKWLPYAHPAsPSNVSALM-SGVMLKVAVYGLVRFLMDVLSPelWWGVLILLAGSIS 280
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 245 MFMAGLIANYEYDFKKIIALSTLSQLSL-----------------MMSILSLGfweMAFFHLVIHALFKSLMFLCVGSFI 307
Cdd:PRK08667  281 ALLGVIYALKEHDLKGLLAYSSIENIGIilmgiglyvifgvygldTLALLALG---GALFHSLNHALFKSLLFLTAGSVV 357
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|...
gi 1899176104 308 HNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIF 360
Cdd:PRK08667  358 HA-TGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFF 409
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
44-357 3.96e-19

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 90.40  E-value: 3.96e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  44 FSFLIYLDFYSMMFLMLVSLISMIVLIYSIyymegDKFMNRFI-ILVILFVISMYLMILSPSFLTILLGWDGLGLISYCL 122
Cdd:PRK07234   59 FGVTLRADALSGYFILTNALVTLAVIFYCW-----ESAKTRFFyAQLLILHGSVNAAFVCADLISLYVALEVLSIATFLL 133
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 123 IIYYQNEKAYNAGMLTIFsnrIGDVGILLMItMGMMfgswnlMVYKFNLLMLILLMLVA------------FTKSAQIPF 190
Cdd:PRK07234  134 VAYPRTDRAIWVGLRYLF---YSNVAMLFYL-IGAV------LVYQANGTFAFSGLATAdpeafalialglLVKGGIFVS 203
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 191 TLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRynkfLFLDYFNKYILL--ISSLTMFMAGLIANYEYDFKKIIALSTLS 268
Cdd:PRK07234  204 GLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVR----CALDVPGLDLIVriFGVGTALLGVLFALLEKDLKRMLAFSTIS 279
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 269 QLSLMMSILSLGfwemAFFHLViHALFKSLMFLCVGSfIHNFNSSQDIRCYGGVmyiypFKTMVLIFSLLCLMGFPFMSG 348
Cdd:PRK07234  280 QLGFILAAPLVG----GLYALA-HGLVKSTLFLCAGA-LPSRNFTELISQMLGI-----GKWIPLTMASFSIAGFPLLAG 348

                  ....*....
gi 1899176104 349 YFSKDMIME 357
Cdd:PRK07234  349 FVSKVLTLK 357
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
44-431 1.60e-18

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 88.33  E-value: 1.60e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  44 FSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMN--RFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYC 121
Cdd:PRK06589   75 YSIGLHLEPLGLIFLLLIGFLWICALLYTPKYLAINNIDSssRFLFFFNLTILIGVLIALSSDLFTMFVCYELLTISTAF 154
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 122 LIIYYQNEKAYNAG-----MLTIFSNRIGDVGILLMITMGMMFGSWNLMVYKFNLLMLILLMLV-AFTKSAQIPFTLWLP 195
Cdd:PRK06589  155 LIGHTRNNISLSGGykylkILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIILLLMFIyGIAKTAIFPVHSWLP 234
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 196 AAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF-LDYF------NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLS 268
Cdd:PRK06589  235 AAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFgLSYLqrifaeFNWLIFIPIVSIFYSSLKALKTDNIKKILAYSTIS 314
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 269 QLSLMM---SILSLGFWEMAFFHLVIHALFKSLMFLCVGSfIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPF 345
Cdd:PRK06589  315 QLSLALlsaFILTPKALGAAILHLVSHSFAKICLFYSMGS-IYSLKKEDQVDKLHGTSKSFPLISFIISISSLSLIGIPI 393
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 346 MSGYFSKDMIMELIFLNK---MNLISMMLLIFSTIFTVSYSIRLIMFILFSK--KNYYVNLIKKESILVNFCMFILLMTI 420
Cdd:PRK06589  394 FSGFISKFLILLAASEQNqpwLSIIVMLVVIASSILSALYLLKILSSIYKPSlsENSFITKSLPYLMQISVITCCCALTL 473
                         410
                  ....*....|.
gi 1899176104 421 FFMGYLYFKIF 431
Cdd:PRK06589  474 FYFIQILIREF 484
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
50-424 4.24e-16

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 80.91  E-value: 4.24e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  50 LDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQNE 129
Cdd:PRK08376   88 VDLFGAFMALIATIVSFLAVLYSISYMKHDTGLDKYYTLILLLELGMLGMAITGDLFNFFVFLEIMSIASYALVAFRNDT 167
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 130 -KAYNAGMLTIFSNRIGDVGILLMItmGMMFGSWNL--MVY-----KFNLLMLILLMLVAFT-----KSAQIPFTLWLPA 196
Cdd:PRK08376  168 wEAIEAGIKYMFVGSLASSMVLLGI--ALLYGQYGTlnMAYlavkmSENPTVVAKIALALFIaglamKSGAVPVHMWLPD 245
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 197 AM-MAPTPVSSLVHSSTLvtAGVYLLIRYNKFLFLDYFNK-----YILLISSLTMFMAGLIANYEYDFKKIIALSTLSQL 270
Cdd:PRK08376  246 AYpAAPSSISAMLLVIKQ--AGLYALARVLFSIYGPAINLatvgwVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQI 323
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 271 SLMM-----SILSLGFWEM----------AFFHLVIHALFKSLMFLCVGSFIHNFNSSqDIRCYGGVMYIYPFKTMVLIF 335
Cdd:PRK08376  324 GYMLlglgvGLAALGDPAMasygeialagGIYHIVNHALYKALLFLTAGAVIYETGTR-NLNELGGLARTMPKTTIAFLI 402
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 336 SLLCLMGFPFMSGYFSKDMIMELIFLnkMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILVNFCMFI 415
Cdd:PRK08376  403 GAAAIVGLPPFNGFASKWLIYESSAL--FNPILGVIAMIGSVLTLASFVKVFHTAFFGPPSEKVMNVKEPPKPMLVPMLI 480

                  ....*....
gi 1899176104 416 LLMTIFFMG 424
Cdd:PRK08376  481 LAIAIIGMG 489
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
48-424 1.48e-14

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 75.96  E-value: 1.48e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  48 IYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKfMNRFIILVILFVISMYLMILSPSFLTILLGWDGLGLISYCLIIYYQ 127
Cdd:PRK08377   74 LYIGPFAALFVLIIAIVSFIMSIFSLKAVEVEP-IDKYAMLFLLLMLGATGMIATGDIFNLFVFMEITAITAYALTAYNK 152
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 128 NEKAYNAGMLTIFSNRIGD-------------VGILLMITMGMMFGSWNLMVYKFNLLMLILLMLVaftKSAQIPFTLWL 194
Cdd:PRK08377  153 TGEAAEASMKYIVLGGIGSsffligvaliygaTGTLNMAHIAQLAGTIDPTVAQVGLALLIFGLAV---EAELFPLNAWA 229
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 195 PAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLF----LDYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQ 269
Cdd:PRK08377  230 PDAYQaAPHPITVMF-SAFVVKAGLYAMARILYLMQnangWSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQ 308
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 270 LSLMMSILSLGFW---EMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQdIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFM 346
Cdd:PRK08377  309 VGMIALALALGTQagvDAGVFHMINHAIVKALLFLAVGYVGITLGGTE-IEKFEGLGKRMPLTALALTIGALSTVGIPLF 387
                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1899176104 347 SGYFSKDMIMeLIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVnlikKESILVNFCMFILLMTIFFMG 424
Cdd:PRK08377  388 NVFWSKFRII-LAGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKGEGERI----RENAAIGIILLLLAALIVVIG 460
PRK07390 PRK07390
NAD(P)H-quinone oxidoreductase subunit F; Validated
58-321 3.35e-14

NAD(P)H-quinone oxidoreductase subunit F; Validated


Pssm-ID: 236008 [Multi-domain]  Cd Length: 613  Bit Score: 75.33  E-value: 3.35e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  58 LMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYLMILSPS-FLT-ILLgwDGLGLISYCLIIYYQNEKAYNAG 135
Cdd:PRK07390   95 LELITGLSLLAQIYALGYLEKDWGLARFFALLGFFEAAMSGLALSDSlFFSyVLL--EILTLSTYLLVGFWYAQPLVVTA 172
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 136 MLTIF-SNRIGDVgILLM--ITMGMMFGSWNLM-VYKFNLLMLILLMLVAFT----------KSAQIPFTLWLPAAMMAP 201
Cdd:PRK07390  173 ARDAFlTKRVGDL-LLLMgvVALSPLAGTLNFSdLAAWAATANLDPLTATLLglaliagptgKCAQFPLHLWLDEAMEGP 251
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 202 TPvSSLVHSSTLVTAGVYLLIRYNKFLFLDYF-NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLG 280
Cdd:PRK07390  252 NP-ASILRNSVVVATGAWVLIKLQPVLALSPVaLTVLIVIGTVTAIGASLVAIAQIDIKRALSYSTSAYLGLVFIAVGLQ 330
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|.
gi 1899176104 281 FWEMAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGG 321
Cdd:PRK07390  331 QPDIALLLLLTHAIAKALLFMSVGSIILT-TITQDLTELGG 370
PRK08601 PRK08601
NADH dehydrogenase subunit 5; Validated
186-313 1.98e-12

NADH dehydrogenase subunit 5; Validated


Pssm-ID: 236310 [Multi-domain]  Cd Length: 509  Bit Score: 69.68  E-value: 1.98e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 186 AQIPFTLWLPAAMMAPTPVSSLVHSStLVTAGVYLLIRYNKfLFLDYFNKYILLI-SSLTMFMAGLIANYEYDFKKIIAL 264
Cdd:PRK08601  219 AQWPFQRWLIESAVAPTPVSAIMHAG-LVNAGGIMLTRFSP-LFHDDIAQILLLIfASISVLIGTGISLVQVDYKRQLVG 296
                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*....
gi 1899176104 265 STLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHNFNSS 313
Cdd:PRK08601  297 STMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAVPRFNIV 345
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
46-308 2.55e-12

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 69.53  E-value: 2.55e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  46 FLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDK---------FMNrfiilviLFVISMYLMILSPSFLTILLGWDGLG 116
Cdd:PRK06521   74 FHLRLDALSAFFLLVISLLGAAASLYSLGYFREYEgkgpgamgfFYN-------LFLASMVLVLLADDAFSFLVAWETMS 146
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 117 LISYCLIIYYQNEKA-YNAGMLTIFSNRIGDVgiLLMITMGMMFGSWNlmVYKF----NLLMLILLMLVAF--------T 183
Cdd:PRK06521  147 LSSWFLVIANHREAEiRRAGFLYLLMAHAGAL--AILLAFGLLARESG--SYDFaamrAAHLSPFWASLVFllalfgfgA 222
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFTLWLPAAM-MAPTPVSSLVhSSTLVTAGVYLLIRYNkFLFL---DYFNKYILLISSL-TMFMAGLIANYEYDF 258
Cdd:PRK06521  223 KAGLVPLHVWLPRAHpAAPSHVSALM-SGVMLKVAIYGILRVV-FDLLgapGWWWGVLVLALGAiSAVLGVLYALAEHDL 300
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1899176104 259 KKIIALSTLSQLSLMMSILSLGfweMAF-----------------FHLVIHALFKSLMFLCVGSFIH 308
Cdd:PRK06521  301 KRLLAYSTIENIGIIFVGLGLA---MVFiaygmpllaalaltaalYHLLNHALFKSLLFLGAGAVLH 364
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
189-424 9.47e-12

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 67.41  E-value: 9.47e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 189 PFTLWLP-AAMMAPTPVSsLVHSSTLVTAGVYLLIRYNKFLFLD---YFNKYILLISSLTMFMAGLIANYEYDFKKIIAL 264
Cdd:COG1008   227 PFHTWLPdAHVEAPTAGS-VLLAGVLLKMGGYGLLRFALPLFPEasaYFAPLLAALGVIGIIYGALVALAQTDLKRLIAY 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 265 STLSQLSLMMsilsLGFWEM-------AFFHLVIHALFKSLMFLCVGsFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSL 337
Cdd:COG1008   306 SSVSHMGFVL----LGIFALnplglqgAVLQMVSHGLITAALFLLVG-VLYDRTHTRDIADLGGLAKRMPVLAALFLLAA 380
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 338 LCLMGFPFMSGYFSKDMIMELIFlnKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILVNFCMFILL 417
Cdd:COG1008   381 LASLGLPGTSGFVGEFLVLLGAF--QVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLA 458

                  ....*..
gi 1899176104 418 MTIFFMG 424
Cdd:COG1008   459 ALILLLG 465
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
181-444 2.35e-11

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 66.17  E-value: 2.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 181 AFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVY-------------LLIRYNKFLFLDYFNKYILLISSLTMFM 247
Cdd:PRK08668  206 GVAKAGIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYgfllvlyvlpgtkLFSEFGTYRGVPLFNYILAWLGNISIIV 285
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 248 AGLIANYEYDFKKIIALSTLSQLSLMMSILSLGF---WEMAFFHLVIHALFKSLMFLCVGSFIHNFNSSQdIRCYGGVMY 324
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTslgFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTK-ISEMGGLIE 364
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 325 IYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVsYSIRLIMFILFSKKNYYVNLIKK 404
Cdd:PRK08668  365 KMPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITAFMAFFGSIGSFL-YVFRPLAGVFLGQLPSDHKDVKE 443
                         250       260       270       280
                  ....*....|....*....|....*....|....*....|
gi 1899176104 405 ESILVNFCMFILLMTIFFMGYLYFKIFNLNYLILLTLNMK 444
Cdd:PRK08668  444 APLPMLIPMAILVLLNVVFGVAPGLVLQEINKIFGELGIG 483
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
12-352 7.19e-10

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 61.29  E-value: 7.19e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  12 FTSWFFLLTLIIFFksklIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKfMNR--FIILV 89
Cdd:COG1007    34 LLAGLALLGLLLAL----ALLLLALGGGTGTAFGGMFVVDGFALFFKLLILLAALLVLLLSRDYLERRG-LLRgeFYALL 108
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  90 ILFVISMYLMILSPSFLTILLGWDGLGLISYCLI-IYYQNEKAYNAGM----LTIFSNrigdvGILLMitmGMMF----- 159
Cdd:COG1007   109 LFATLGMMLMASANDLLTLFLGLELLSLSLYVLVaFRRDDRRSSEAALkyflLGALSS-----GFLLY---GISLlygat 180
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 160 GSWNLMVYKFNLLMLILLMLVAFT-----------KSAQIPFTLWLP-AAMMAPTPVSSLVhsSTLV-TAGVYLLIRYNK 226
Cdd:COG1007   181 GSLNLAGIAAALAAGGANSPLLLLglvlvlaglafKLSAVPFHMWTPdVYEGAPTPVTAFL--ATAPkIAAFAALLRLLV 258
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 227 FLFL---DYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLGFWEM---AFFHLVIHALFKSLMF 300
Cdd:COG1007   259 EAFPglaADWQLLLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGvsaALFYLLAYLFMNLGAF 338
                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 1899176104 301 LCVGSFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSK 352
Cdd:COG1007   339 AVILLLSRKGGEAEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGK 390
PRK12665 PRK12665
putative monovalent cation/H+ antiporter subunit D; Reviewed
180-357 3.78e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237165 [Multi-domain]  Cd Length: 521  Bit Score: 52.66  E-value: 3.78e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 180 VAF-TKSAQIPFTLWLPAAM-MAPTPVSSlVHSSTLVTAGVYLLIRYNKFLFL-DYFNKYILLISSLTMFMAGLIANYEY 256
Cdd:PRK12665  217 VAFgIKAAVFPLSFWLPDSYpTAPAPVTA-VFAGLLTKVGVYAIIRTHTLLFPgGGLDTLLMVVALLTMVVGILGAIAQS 295
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 257 DFKKIIALSTLSQLSLMMSILSLGFWE---MAFFHLVIHALFKSLMFLCVGsFIHNFNSSQDIRCYGGVMYIYPFKTMVL 333
Cdd:PRK12665  296 DIKRLLSFTLVSHIGYMVFGIALSTVAglsGAIYYVAHHITVQTTLFLVVG-LIERQAGSSSLRRLGGLAKASPLLAVLF 374
                         170       180
                  ....*....|....*....|....
gi 1899176104 334 IFSLLCLMGFPFMSGYFSKDMIME 357
Cdd:PRK12665  375 FVPALNLGGIPPFSGFIGKVALLE 398
Proton_antipo_N pfam00662
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an ...
40-85 4.35e-07

NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus; This sub-family represents an amino terminal extension of pfam00361. Only NADH-Ubiquinone chain 5 and eubacterial chain L are in this family. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane.


Pssm-ID: 459895 [Multi-domain]  Cd Length: 51  Bit Score: 46.65  E-value: 4.35e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 1899176104  40 NSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRF 85
Cdd:pfam00662   5 GDLSISFGFLIDPLSALMLLVVTGVSLLVHIYSIGYMHHDPGYARF 50
PRK07691 PRK07691
putative monovalent cation/H+ antiporter subunit D; Reviewed
183-377 3.01e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 181085 [Multi-domain]  Cd Length: 496  Bit Score: 49.95  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 183 TKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF---LDYFNKYILLISSLTMFMAGLIANYEYDFK 259
Cdd:PRK07691  221 TKAGLFPLYFWLPGSYYAPPIAIAALFGALLTKVGVYAIARTFTLFFshdTSFTHYLILILALLTIIFGVIGAVAYFDIK 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 260 KIIALSTLSQLSLMMSILSLGFWEM---AFFHLVIHALFKSLMFLCVGSFIHnFNSSQDIRCYGGVMYIYPFKTMVLIFS 336
Cdd:PRK07691  301 KIIIYNIMIAVGVILVGVAMMTESGmigAIYYLIHDMIVKAALFLLIGIMIK-ITGTTDLKKMGGLIKRYPVLGWMFFIA 379
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 1899176104 337 LLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTI 377
Cdd:PRK07691  380 ALSLAGIPPLSGFYGKFFIVEGTFEAGFYVSGIIVLLSSLL 420
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
188-392 5.97e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 49.05  E-value: 5.97e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 188 IPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYILLISSLTMFM---AGLIANYEYDFKKIIAL 264
Cdd:PRK05846  228 FPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITLGVIAiiyGALVALAQTDIKKLIAY 307
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 265 STLSQlslmMSILSLGFWEM-------AFFHLVIHALFKSLMFLCVGsFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSL 337
Cdd:PRK05846  308 SSISH----MGFVTLGIFAGnqlgiqgAIFQMISHGLSSAALFLLVG-VLYDRLHTRDIADYGGLAKVMPVLAAFFLFFA 382
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1899176104 338 LCLMGFPFMSGYFSKDMIMELIFlnKMNLISMMLLIFSTIFTVSYSIRLIMFILF 392
Cdd:PRK05846  383 MASLGLPGTSGFVGEFLILLGSF--QVNPVIAFIATTGLILAAVYSLWLYQRVMF 435
PRK12668 PRK12668
Na(+)/H(+) antiporter subunit D;
105-396 8.17e-06

Na(+)/H(+) antiporter subunit D;


Pssm-ID: 237168 [Multi-domain]  Cd Length: 581  Bit Score: 48.74  E-value: 8.17e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 105 FLTILLGWDGLGLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVgILLMITMGMMFGSWNLMVYKFNLLMLILLMLVAF-- 182
Cdd:PRK12668  115 LLTLFVFWELMAFTSTFLVWARGTKAAVRAGFRYLLVHVLGGV-LLLAGILLHYAETGSFAFGAIAGLGGTAAWLILIgf 193
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 183 -TKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRynkflflDYFNKYILLISSLTMFMAGLI-ANYEYDFKK 260
Cdd:PRK12668  194 gVNAAFPPLHAWLPDAYPEATVTGSVFLSAFTTKTAVYALAR-------AFPGTELLIYIGAAMAVYGVFfALLENDLRR 266
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 261 IIALSTLSQLSLMMSILSLGFwEM----AFFHLVIHALFKSLMFLCVGSFIHnfnSSQDIRCY--GGVMYIYPFKTMVLI 334
Cdd:PRK12668  267 LLSYHIVSQVGYMVAGIGIGT-ALaingAVAHAFNHILYKGLLFMSAGAVLY---RTGTEKLTelGGLYRSMPLTALFCL 342
                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899176104 335 FSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKN 396
Cdd:PRK12668  343 VGALSISAFPLFSGFVSKSMIISAAGEDHYVWVWLLLLLASAGTFLHFGIKLPYFAFFGGDS 404
PRK08042 PRK08042
formate hydrogenlyase subunit 3; Reviewed
146-360 1.33e-05

formate hydrogenlyase subunit 3; Reviewed


Pssm-ID: 181206 [Multi-domain]  Cd Length: 593  Bit Score: 47.90  E-value: 1.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 146 DVGILLMITMGMMFGS--WNLMVYKFNLLmlillmlvaftkSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVY--- 219
Cdd:PRK08042  165 DLRLLDMRMQQLPLGSdiWLLGVIGFGLL------------AGIIPLHGWVPQAHAnASAPAAALF-STVVMKIGLLgil 231
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 220 --LLIRYNKFLfldYFNKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMM---------------SILSLGFW 282
Cdd:PRK08042  232 tlSLLGGNAPL---WWGVALLVLGMITAFVGGLYALMEHNIQRLLAYHTLENIGIILlglgagvtgialeqpALIALGLV 308
                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1899176104 283 EmAFFHLVIHALFKSLMFLCVGSFIHNfNSSQDIRCYGGVMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIF 360
Cdd:PRK08042  309 G-GLYHLLNHSLFKSVLFLGAGSVWFR-TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFF 384
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
184-433 1.91e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 47.37  E-value: 1.91e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF---LDYFNKYILLISSLTMFMAGLIANYEYDFKK 260
Cdd:MTH00204  222 KIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFpaaSEYFAPLIVMLSVIAVIYGSLTTCRQVDFKR 301
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 261 IIALSTLSQlslmMSILSLGFWE-------MAFFHLVIHALFKSLMFLCVgSFIHNFNSSQDIRCYGGVMYIYPFKTMVL 333
Cdd:MTH00204  302 LIAYSSVAH----MGLVPLGLFThtieglvAAVFLMLAHGFVSSALFIAV-TFLYERHHTRLIKYYRGLTLTMPLFVIIM 376
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 334 IFSLLCLMGFPFMSGYFSKdmIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILVNFCM 413
Cdd:MTH00204  377 LVLSLANMGFPLSCNFVGE--FFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNYLLFSRDLNRRELLAI 454
                         250       260
                  ....*....|....*....|
gi 1899176104 414 FILLMTIFFMGYLYFKIFNL 433
Cdd:MTH00204  455 LPLIIAIFLLGIVPFIIIDL 474
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
184-392 7.35e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 45.33  E-value: 7.35e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFtLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFL---DYFNKYILLISSLTMFMAGLIANYEYDFKK 260
Cdd:PRK12663  220 KAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIYALIRVFTLLFPqerELLHPLLATMAAITMVIGALGALAYKDIRR 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 261 IIALSTLSQLSLMMSILSLGFW---EMAFFHLVIHALFKSLMFLCVGSFIHnFNSSQDIRCYGGVMYIYPFKTMVLIFSL 337
Cdd:PRK12663  299 IAGYQVISSIGFILLGLALGTPagiNGAIFYLVHDMVVKTALFLIAGSLVR-LTGYRSLQYLGGLYRKEPLFGALFLILI 377
                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1899176104 338 LCLMGFPFMSGYFSKDMIMELIfLNKMNLISMMLLIFSTIFTVsYSIRLIMFILF 392
Cdd:PRK12663  378 FAIGGLPPFSGFWGKVLLVQGA-LDNGAYILLALMLITSLITM-YSLFRIFFLAY 430
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
234-433 1.42e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 44.04  E-value: 1.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 234 NKYILLISSLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSLG--FWEMAFFHLVIHALFKSLMFLCVGSFIHNFN 311
Cdd:MTH00160  143 NNFIIIIIILSAIIGAIGGLNQTSLRKILAYSSINHLGWMLSSMMISenLWLIYFLIYSIISLSIILLFNKFNIFFLNQL 222
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 312 SSQdircyggvMYIYPFKTMVLIFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLIsMMLLIFSTIFTVSYSIRLIMFIL 391
Cdd:MTH00160  223 FNS--------NNKSKKIKFLLFLNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFL-LFILIMSSLITLYFYLRISYSSL 293
                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1899176104 392 FSKKNYYVNLIKKESILVNFCMFILLMTIFFMGYLYFKIFNL 433
Cdd:MTH00160  294 MLNYNKNKWNLKKKKNKFSLILNFLSFISLFGLILSSLLFLL 335
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
183-424 1.92e-04

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 44.15  E-value: 1.92e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 183 TKSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRY----NKFLFLDYFNKYILLISSLTMFMAGLIANYEYD 257
Cdd:PRK06458  226 TKVGLFPMHAWLPDAHSeAPSPVSALL-SGVLLNVALYAVLRYyiliDAAIGSDFPGRLLLIFGLLSVLVAAFFLLRQRD 304
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 258 FKKIIALSTLSQLSLMMSILSLGfWEMAFF----HLVIHALFKSLMFLCVGSfIHNFNSSQDIRCYGGVMYIYPFKTMVL 333
Cdd:PRK06458  305 IKRLFAYSSIEHMGLIAFALGIG-GPLGIFaallHMLNHSLTKSAIFFASGN-VLQKYGTRDINVIRGLLKVSPLTGWGL 382
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 334 IFSLLCLMGFPFMSGYFSKDMIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILfsKKNYYVNLIKKESILVNFCM 413
Cdd:PRK06458  383 MLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVRRVAGMVF--GEPPEAVNRGDLGWLTTSPM 460
                         250
                  ....*....|.
gi 1899176104 414 FILLMTIFFMG 424
Cdd:PRK06458  461 FVHLVLVLVLG 471
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
184-432 2.37e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 40.42  E-value: 2.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLD---YFNKYILLISSLTMFMAGLIANYEYDFKK 260
Cdd:MTH00217  219 KIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEaseYFSPLIQTLSLLAIIYGSLTTCRQVDLKR 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 261 IIALSTLSQLSLM-MSILSLGF--WEMAFFHLVIHALFKSLMFLCVgSFIHNFNSSQDIRCYGGVMYIYPFKTMVLIFSL 337
Cdd:MTH00217  299 IIAYSSVAHMGLVtLGIFSHTIqgLVAAIFLMLAHGLVSSALFIAV-TFLYERHHTRLIKYYRGMVITMPLFGILMLLLV 377
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 338 LCLMGFPFMSGYFSKdmIMELIFLNKMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNLIKKESILVNFCMFILL 417
Cdd:MTH00217  378 LANASIPLSCNFVGE--FLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFGAPSKYLYFSRDLNRREFYVLLPLV 455
                         250
                  ....*....|....*
gi 1899176104 418 MTIFFMGYLYFKIFN 432
Cdd:MTH00217  456 FLIYLMGIFPFIIID 470
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
184-356 2.69e-03

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 40.51  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFL----FLDYFNKYILLISSLTMFMAGLIANYEYDFK 259
Cdd:PRK08676  219 KSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLrqsgAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLK 298
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 260 KIIALSTLSQLSLMMSILSLG-----FWemAFFHLVIHALFKSLMFLCVGsFIHNFNSSQDIRCYGGVMYIYPFKTMVLI 334
Cdd:PRK08676  299 KLIAFSSIEHMGLMLLGIGIGtplalFW--MLFHMLAHSLVKSGLFFSAG-ILHRQYRSDRFDRIFDVFRLQPVAAWGVI 375
                         170       180
                  ....*....|....*....|..
gi 1899176104 335 FSLLCLMGFPFMSGYFSKDMIM 356
Cdd:PRK08676  376 LGSAAIIGMPPFPLFLSKFFIL 397
PRK06459 PRK06459
hydrogenase 4 subunit B; Validated
11-279 3.61e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235806 [Multi-domain]  Cd Length: 585  Bit Score: 40.16  E-value: 3.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  11 MFTSWFFLLTLIIFFKSKLIMLEWMIYSYNSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNrfiILVI 90
Cdd:PRK06459    3 LYILPVFLISILLSIFNKKASYILTMISSIILLITSIYEYNGVLSFFSIISTIVWILASLYSIEYDHYGKWLS---SLYI 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  91 LFVISMYLMILSPSFLTILLGWDGLGLISYcLIIYYQNEKAYNAGMLTIFsnriGDVGILLMITmGMMFGSWNLMVYKFN 170
Cdd:PRK06459   80 LTILGMAIVLTSDNYLLFLAGWEIMTIPSY-VAIALTKKNKRPAFVFMAF----GELSTVLILA-GFAWAFIISGTTNFS 153
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 171 LLMLILLMLVA----FTKSAQIPFTL--WLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLF---LDYFNKYILLIS 241
Cdd:PRK06459  154 YLPSPVPLILAsfgfIIKMGMMPFLVseWLPIAHGNAPSNFSAILSATMTLMGVYGILKMTILTQtipIGYFGLTILAIG 233
                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 1899176104 242 SLTMFMAGLIANYEYDFKKIIALSTLSQLSLMMSILSL 279
Cdd:PRK06459  234 AFSILFGALYAYVSENVKGLLAFSTIENNGAILVALGL 271
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
19-428 4.42e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 39.50  E-value: 4.42e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  19 LTLIIFFKSKLIMLEWMIYSYnSMKFSFLIYLDFYSMMFLMLVSLISMIVLIYSIYYMEGDKFMNRFIILVILFVISMYL 98
Cdd:MTH00094    1 LSLLFFFSPFLFFLFLMFFSF-LMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLSEKNFNLLILSNLLILICLLFF 79
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104  99 MILSPSFLTILLGWDGLgLISYCLIIYYQNEKAYNAGMLTIFSNRIGDVGILLMITMGMMFGSWNLMVYKFNLLMLILLM 178
Cdd:MTH00094   80 VSSNMLMLYMFFELSMF-PILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLKNFFFFSLCYFDFFLSWEMFFILS 158
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 179 LVAFTKSAQIPFTLWLPAAMMAPTPVSSLVHSSTLVTAGVYLLIRYNKFLFLDYFNKYILlISSLTMFMAGLIANYEYDF 258
Cdd:MTH00094  159 LSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRILGSLNFVYNNFWII-FSLLGMILSSFCCVFQSDS 237
                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 259 KKIIALSTLSQLS---LMMSILSLGFWEMAFFHLVIHALFKSLMFLCVGSFIHnFNSSQDIRCYGGVMYIYPFKTMVLIF 335
Cdd:MTH00094  238 KSLAAYSSVTHMSfllLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYH-ISKSRLIYFMNSFFSSSMFFGLIFSL 316
                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 336 SLLCLMGFPFMSGYFSKDMIMELIFLnkMNLISMMLLIFSTIFTVSYSIRLIMFILFSKKNYYVNlikkeSILVNFCMFI 415
Cdd:MTH00094  317 VFLSNSGVPPSLSFFSEFLIISNSFM--KNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFN-----NFNVGLSLPL 389
                         410
                  ....*....|...
gi 1899176104 416 LLMTIFFMGYLYF 428
Cdd:MTH00094  390 VFMMFNMFWLSLF 402
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
180-352 5.13e-03

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 39.65  E-value: 5.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 180 VAFtKSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLFLDYFNKYILLISSL---TMFMAGLIANYE 255
Cdd:PRK02504  220 IAF-KISAVPFHQWTPDVYEgSPTPVVAFL-SVGSKAAGFALAIRLLVTAFPSFDEQWKLLFTALailSMVLGNVVALAQ 297
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 256 YDFKKIIALSTLSQLSLMMSILSL----GFWEMAFFHLVIhaLFKSL-MFLCVGSFIHNFNSSQdIRCYGGVMYIYPFKT 330
Cdd:PRK02504  298 TSMKRMLAYSSIGQAGFVMIGLVAgteaGYASMVFYLLAY--LFMNLgAFACVILFSLRTGTDQ-ISDYAGLYQKDPLLT 374
                         170       180
                  ....*....|....*....|..
gi 1899176104 331 MVLIFSLLCLMGFPFMSGYFSK 352
Cdd:PRK02504  375 LGLSLCLLSLGGIPPLAGFFGK 396
ndhB CHL00049
NADH dehydrogenase subunit 2
184-352 6.89e-03

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 39.22  E-value: 6.89e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 184 KSAQIPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLFLDYFNKYILL---ISSLTMFMAGLIANYEYDFK 259
Cdd:CHL00049  227 KLSLAPFHQWTPDVYEgSPTPVVAFL-SVTSKVAASALATRIFDIPFYFSSNEWHLLleiLAILSMILGNLIAITQTSMK 305
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 260 KIIALSTLSQLSLMMSILSLGFWEMAFFHLVIHALFKSLM----FLCVGSFIHNFNSSQdIRCYGGVMYIYPFKTMVLIF 335
Cdd:CHL00049  306 RMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIFMnlgtFACIVLFGLRTGTDN-IRDYAGLYTKDPFLALSLAL 384
                         170
                  ....*....|....*..
gi 1899176104 336 SLLCLMGFPFMSGYFSK 352
Cdd:CHL00049  385 CLLSLGGIPPLAGFFGK 401
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
188-355 7.77e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 38.91  E-value: 7.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 188 IPFTLWLPAAMM-APTPVSSLVhSSTLVTAGVYLLIRYNKFLFLD---YFNKYILLISSLTMFMAGLIANYEYDFKKIIA 263
Cdd:PRK06473  222 VPFHTWLPDAHVeASTPVSVLL-AGVLLKLGTYGLLRFGVGLFPEawvYLAPWLATWAVVSVLYGASCAIAQKDMKKMVA 300
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899176104 264 LSTLSQLSLM---------MSILSlgfwemAFFHLVIHALFKSLMFLCVGsFIHNFNSSQDIRCYGGVMYI---YPFKTM 331
Cdd:PRK06473  301 YSSIGHMGYIllaaaaatpLSILA------AVFQMISHGLISALLFLLVG-VVYKKTGSRDVDVLRGLLNPergLPITGS 373
                         170       180
                  ....*....|....*....|....
gi 1899176104 332 VLIFSLLCLMGFPFMSGYFSKDMI 355
Cdd:PRK06473  374 LMILGVMASAGIPGMVGFIAEFLV 397
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH
HHS Vulnerability Disclosure