|
Name |
Accession |
Description |
Interval |
E-value |
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
1-175 |
9.21e-85 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 269.66 E-value: 9.21e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKigelidqgvdakqlrkilkpiydls 80
Cdd:PRK00405 893 KGVVSRILPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAAKGLGIK------------------------- 947
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrkgvpISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:PRK00405 948 ---------------------------FATPVFDGAKEEEIKELLEEAGLPEDGKTTLYDGRTGEPFDRPVTVGYMYMLK 1000
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:PRK00405 1001 LHHLVDDKIHARSTG 1015
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
1-175 |
1.53e-71 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 233.02 E-value: 1.53e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGikigelidqgvdakqlrkilkpiydls 80
Cdd:TIGR02013 850 KGVVSKILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAGKRLG--------------------------- 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:TIGR02013 903 ----------------------RKGVPIATPVFDGASEEEIKEYLEKAGLPRDGKVRLYDGRTGEQFDRPVTVGYMYMLK 960
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:TIGR02013 961 LHHLVDDKMHARSTG 975
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
1-175 |
1.06e-70 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 230.00 E-value: 1.06e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKigelidqgvdakqlrkilkpiydls 80
Cdd:COG0085 784 KGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLETHLGWAAALLGRR------------------------- 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrkgvpISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:COG0085 839 ---------------------------VATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGYMYYLK 891
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:COG0085 892 LHHMVDDKIHARSTG 906
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
1-175 |
1.81e-60 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 191.59 E-value: 1.81e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGlgikigelidqgvdakqlrkilkpiydls 80
Cdd:pfam00562 232 KGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAAL----------------------------- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrKGVPISSPVFDGATE--EEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYM 158
Cdd:pfam00562 283 -----------------------LGVFVDATPFDGASTevEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYY 339
|
170
....*....|....*..
gi 1899198664 159 LKLNHLVDDKMHARSTG 175
Cdd:pfam00562 340 QKLKHMVDDKIHARSTG 356
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
1-175 |
1.38e-52 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 178.92 E-value: 1.38e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKglgikigelidqgvdakqlrkilkpiydls 80
Cdd:cd00653 643 KGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGA------------------------------ 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:cd00653 693 ----------------------LLGKFGDATPFDGAEEEDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQR 750
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:cd00653 751 LKHMVDDKIHARSTG 765
|
|
|
|
Name |
Accession |
Description |
Interval |
E-value |
| rpoB |
PRK00405 |
DNA-directed RNA polymerase subunit beta; Reviewed |
1-175 |
9.21e-85 |
|
DNA-directed RNA polymerase subunit beta; Reviewed
Pssm-ID: 234749 [Multi-domain] Cd Length: 1112 Bit Score: 269.66 E-value: 9.21e-85
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKigelidqgvdakqlrkilkpiydls 80
Cdd:PRK00405 893 KGVVSRILPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAAKGLGIK------------------------- 947
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrkgvpISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:PRK00405 948 ---------------------------FATPVFDGAKEEEIKELLEEAGLPEDGKTTLYDGRTGEPFDRPVTVGYMYMLK 1000
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:PRK00405 1001 LHHLVDDKIHARSTG 1015
|
|
| rpoB |
TIGR02013 |
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit ... |
1-175 |
1.53e-71 |
|
DNA-directed RNA polymerase, beta subunit; This model describes orthologs of the beta subunit of Bacterial RNA polymerase. The core enzyme consists of two alpha chains, one beta chain, and one beta' subunit. [Transcription, DNA-dependent RNA polymerase]
Pssm-ID: 273928 [Multi-domain] Cd Length: 1065 Bit Score: 233.02 E-value: 1.53e-71
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGikigelidqgvdakqlrkilkpiydls 80
Cdd:TIGR02013 850 KGVVSKILPIEDMPFLEDGTPVDIVLNPLGVPSRMNIGQILETHLGWAGKRLG--------------------------- 902
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:TIGR02013 903 ----------------------RKGVPIATPVFDGASEEEIKEYLEKAGLPRDGKVRLYDGRTGEQFDRPVTVGYMYMLK 960
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:TIGR02013 961 LHHLVDDKMHARSTG 975
|
|
| RpoB |
COG0085 |
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ... |
1-175 |
1.06e-70 |
|
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase
Pssm-ID: 439855 [Multi-domain] Cd Length: 1001 Bit Score: 230.00 E-value: 1.06e-70
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKigelidqgvdakqlrkilkpiydls 80
Cdd:COG0085 784 KGVISRILPQEDMPFLEDGTPVDIVLNPLGVPSRMNVGQVLETHLGWAAALLGRR------------------------- 838
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrkgvpISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:COG0085 839 ---------------------------VATPVFDGAPEEEIRELLEKAGLPPDGKEVLYDGRTGEPFDNPVTVGYMYYLK 891
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:COG0085 892 LHHMVDDKIHARSTG 906
|
|
| RNA_pol_Rpb2_6 |
pfam00562 |
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ... |
1-175 |
1.81e-60 |
|
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).
Pssm-ID: 459854 [Multi-domain] Cd Length: 371 Bit Score: 191.59 E-value: 1.81e-60
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGlgikigelidqgvdakqlrkilkpiydls 80
Cdd:pfam00562 232 KGVVSRILPQEDMPFTEDGIPPDIILNPHGVPSRMTIGQLLETHLGKAAAL----------------------------- 282
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrKGVPISSPVFDGATE--EEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYM 158
Cdd:pfam00562 283 -----------------------LGVFVDATPFDGASTevEDIGELLEKAGYNYYGKEVLYDGRTGEPFEAPIFVGPIYY 339
|
170
....*....|....*..
gi 1899198664 159 LKLNHLVDDKMHARSTG 175
Cdd:pfam00562 340 QKLKHMVDDKIHARSTG 356
|
|
| PRK14844 |
PRK14844 |
DNA-directed RNA polymerase subunit beta/beta'; |
1-175 |
9.76e-59 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 173305 [Multi-domain] Cd Length: 2836 Bit Score: 197.54 E-value: 9.76e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKIGELIDQ-------------GVDAK 67
Cdd:PRK14844 1094 KGVISRVVPVEDMPYLEDGTPVDIILNPLGVPSRMNVGQILETHVGWACKKLGEKVGNILDEinkiksafckgirSLNDD 1173
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 68 QLRKILKPIYDLSKTQKF-------------NLEVLNDeEVTTLAKN--------------------------------- 101
Cdd:PRK14844 1174 NFTKFAAAYLDNKKIENIdddeitasvlntpNKNALND-ELNELVENylnscksaysnlrnflievyscgsnvsicnnir 1252
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 102 -------------LRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLKLNHLVDDK 168
Cdd:PRK14844 1253 disdnnliefarkLRDGIPVAAPVFEGPKDEQIAKLFELAGLDNSGQAVLYDGCSGEKFDRKVTVGYMYMLKLHHLVDGK 1332
|
....*..
gi 1899198664 169 MHARSTG 175
Cdd:PRK14844 1333 IHARSVG 1339
|
|
| PRK09603 |
PRK09603 |
DNA-directed RNA polymerase subunit beta/beta'; |
1-175 |
1.40e-56 |
|
DNA-directed RNA polymerase subunit beta/beta';
Pssm-ID: 181983 [Multi-domain] Cd Length: 2890 Bit Score: 191.29 E-value: 1.40e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKIGELIDQGVD--AKQLRKILKPIYD 78
Cdd:PRK09603 1101 KGIVSNIVPVADMPYTADGEPVDIVLNPLGVPSRMNIGQILEMHLGLVGKEFGKQIASMLEDKTKdfAKELRAKMLEIAN 1180
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 79 LSKTQ----KFNLEVLNDEEVTTLAKNLRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVV 154
Cdd:PRK09603 1181 AINEKdpltIHALENCSDEELLEYAKDWSKGVKMAIPVFEGISQEKFYKLFELAKIAMDGKMDLYDGRTGEKMRERVNVG 1260
|
170 180
....*....|....*....|.
gi 1899198664 155 YMYMLKLNHLVDDKMHARSTG 175
Cdd:PRK09603 1261 YMYMIKLHHLVDEKVHARSTG 1281
|
|
| RNA_pol_B_RPB2 |
cd00653 |
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ... |
1-175 |
1.38e-52 |
|
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.
Pssm-ID: 238353 [Multi-domain] Cd Length: 866 Bit Score: 178.92 E-value: 1.38e-52
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKglgikigelidqgvdakqlrkilkpiydls 80
Cdd:cd00653 643 KGVISKILPQEDMPFTEDGIPPDIILNPHGFPSRMTIGQLLESLLGKAGA------------------------------ 692
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlRKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:cd00653 693 ----------------------LLGKFGDATPFDGAEEEDISELLGEAGLNYYGKEVLYDGRTGEPLEAPIFVGPVYYQR 750
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:cd00653 751 LKHMVDDKIHARSTG 765
|
|
| rpoB |
CHL00001 |
RNA polymerase beta subunit |
1-175 |
1.37e-38 |
|
RNA polymerase beta subunit
Pssm-ID: 214330 [Multi-domain] Cd Length: 1070 Bit Score: 139.65 E-value: 1.37e-38
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAakglgikiGELIDqgvdaKQLRkiLKPI---Y 77
Cdd:CHL00001 827 KGIISKILPRQDMPYLQDGTPVDMVLNPLGVPSRMNVGQIFECLLGLA--------GDLLN-----RHYR--IAPFderY 891
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 78 DLSKTQKFNLEVLNDEEVTTlaknlrkgvpiSSP-VFdgateeEIKHLlemaglptsGQAHL*DGRTGKRFDRAVTVVYM 156
Cdd:CHL00001 892 EQEASRKLVFSELYEASKQT-----------ANPwVF------EPEYP---------GKSRLFDGRTGDPFEQPVTIGKA 945
|
170
....*....|....*....
gi 1899198664 157 YMLKLNHLVDDKMHARSTG 175
Cdd:CHL00001 946 YILKLIHQVDDKIHARSSG 964
|
|
| rpoB |
CHL00207 |
RNA polymerase beta subunit; Provisional |
1-175 |
1.49e-36 |
|
RNA polymerase beta subunit; Provisional
Pssm-ID: 214397 [Multi-domain] Cd Length: 1077 Bit Score: 133.68 E-value: 1.49e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLETHLGWAAKGLGIKIgelidqgvdakqlrKILkpiydls 80
Cdd:CHL00207 823 KGIISRILPRQDMPYLPDGTPPDIILNPLGVPSRMNVGQLFECLLGLAGDNLNKRF--------------KIL------- 881
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqKFNlEVLNDEEVTTLAKNlrkgvpisspVFDGATEEEIKHLLEMAGLPtsGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:CHL00207 882 ---PFD-EMYGSEYSRILINN----------KLNQASIKNNEYWLFNSYHP--GKMVLRDGRTGYKFKNPVTVGIAYMLK 945
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:CHL00207 946 LIHLVDDKIHARTTG 960
|
|
| PRK07225 |
PRK07225 |
DNA-directed RNA polymerase subunit B'; Validated |
1-175 |
4.06e-28 |
|
DNA-directed RNA polymerase subunit B'; Validated
Pssm-ID: 235972 [Multi-domain] Cd Length: 605 Bit Score: 109.28 E-value: 4.06e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLEThlgwaakgLGIKIGELIDQGVDAKqlrkilkpiydls 80
Cdd:PRK07225 371 KGVIGLIVPQEDMPFTESGVVPDLIINPHAIPSRMTVGHVLEM--------IGGKVGSLEGRRVDGT------------- 429
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrkgvpisspVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:PRK07225 430 -------------------------------AFSGEDEEDLREALEKLGFEHTGKEVMYDGITGEKIEAEIFVGVIYYQK 478
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:PRK07225 479 LHHMVANKLHARSRG 493
|
|
| PRK08565 |
PRK08565 |
DNA-directed RNA polymerase subunit B; Provisional |
1-175 |
2.74e-27 |
|
DNA-directed RNA polymerase subunit B; Provisional
Pssm-ID: 236291 [Multi-domain] Cd Length: 1103 Bit Score: 106.96 E-value: 2.74e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 1 KGVISTIVPVEDMPYLEDGTPVDIVLNPLGVPSRMNIGQVLEThlgwaakgLGIKIGELidqgvdakqlrkilkpiydls 80
Cdd:PRK08565 869 KGVIGMLVPQEDMPFTEDGIVPDLIINPHAIPSRMTVGQLLES--------IAGKVAAL--------------------- 919
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899198664 81 ktqkfnlevlndeevttlaknlrKGVPISSPVFDGATEEEIKHLLEMAGLPTSGQAHL*DGRTGKRFDRAVTVVYMYMLK 160
Cdd:PRK08565 920 -----------------------EGRFVDATPFYGEPEEELRKELLKLGYKPDGTEVMYDGRTGEKIKAPIFIGVVYYQK 976
|
170
....*....|....*
gi 1899198664 161 LNHLVDDKMHARSTG 175
Cdd:PRK08565 977 LHHMVADKIHARARG 991
|
|
|