|
Name |
Accession |
Description |
Interval |
E-value |
| ND4 |
MTH00124 |
NADH dehydrogenase subunit 4; Provisional |
1-224 |
3.08e-133 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214427 [Multi-domain] Cd Length: 457 Bit Score: 383.01 E-value: 3.08e-133
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00124 234 ILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAM 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00124 314 ILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTI 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 224
Cdd:MTH00124 394 ILTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
|
|
| ND4 |
MTH00068 |
NADH dehydrogenase subunit 4; Provisional |
1-225 |
2.52e-124 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214417 [Multi-domain] Cd Length: 458 Bit Score: 360.39 E-value: 2.52e-124
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00068 234 VLLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAI 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00068 314 ILMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTI 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGPF 225
Cdd:MTH00068 394 LITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
|
|
| ND4 |
MTH00110 |
NADH dehydrogenase subunit 4; Provisional |
1-224 |
4.48e-118 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177172 [Multi-domain] Cd Length: 459 Bit Score: 344.57 E-value: 4.48e-118
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00110 234 ILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGAT 313
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00110 314 ALMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITI 393
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 224
Cdd:MTH00110 394 ILMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
1-223 |
3.51e-96 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 288.78 E-value: 3.51e-96
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00127 235 VLLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGAL 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00127 315 ILMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTL 394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMG 223
Cdd:MTH00127 395 ALTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
|
|
| ND4 |
MTH00206 |
NADH dehydrogenase subunit 4; Provisional |
1-221 |
9.98e-91 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214458 [Multi-domain] Cd Length: 450 Bit Score: 274.51 E-value: 9.98e-91
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00206 230 VLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGAL 309
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00206 310 LLMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTL 389
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALI 221
Cdd:MTH00206 390 PLLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
|
|
| ND4 |
MTH00044 |
NADH dehydrogenase subunit 4; Validated |
1-222 |
4.36e-77 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214411 [Multi-domain] Cd Length: 458 Bit Score: 239.88 E-value: 4.36e-77
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLN-PLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:MTH00044 235 ILLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGA 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:MTH00044 315 LILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILS 394
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807318 160 IIMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 222
Cdd:MTH00044 395 FPIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
|
|
| ND4 |
MTH00163 |
NADH dehydrogenase subunit 4; Provisional |
1-222 |
1.99e-69 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214443 [Multi-domain] Cd Length: 445 Bit Score: 219.64 E-value: 1.99e-69
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00163 222 VLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSL 301
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00163 302 LMMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSM 381
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 222
Cdd:MTH00163 382 IFLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
|
|
| ND4 |
MTH00150 |
NADH dehydrogenase subunit 4; Provisional |
1-223 |
4.17e-65 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214435 [Multi-domain] Cd Length: 417 Bit Score: 207.77 E-value: 4.17e-65
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00150 193 ILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGAL 272
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00150 273 IMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFF 352
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMG 223
Cdd:MTH00150 353 VPLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
|
|
| ND4 |
MTH00014 |
NADH dehydrogenase subunit 4; Validated |
1-221 |
2.93e-58 |
|
NADH dehydrogenase subunit 4; Validated
Pssm-ID: 214399 [Multi-domain] Cd Length: 452 Bit Score: 190.72 E-value: 2.93e-58
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00014 228 ILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGAL 307
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00014 308 AMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTA 387
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALI 221
Cdd:MTH00014 388 ILLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
|
|
| ND4 |
MTH00205 |
NADH dehydrogenase subunit 4; Provisional |
1-222 |
1.85e-57 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214457 [Multi-domain] Cd Length: 448 Bit Score: 188.65 E-value: 1.85e-57
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00205 226 VLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAI 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00205 306 IMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISG 385
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 222
Cdd:MTH00205 386 IPLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
1-225 |
1.55e-43 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 152.93 E-value: 1.55e-43
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:COG1008 250 VLLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:COG1008 330 VLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWL 409
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 1899807318 160 IIMTGLGTLLTATYSLHMFLTTQRNKPPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGPF 225
Cdd:COG1008 410 AILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
1-167 |
2.76e-41 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 142.45 E-value: 2.76e-41
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:pfam00361 123 TLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAI 202
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLA-NTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:pfam00361 203 FHLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIF 282
|
....*...
gi 1899807318 160 IIMTGLGT 167
Cdd:pfam00361 283 LVLAGVVG 290
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
1-178 |
8.81e-40 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 142.77 E-value: 8.81e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:TIGR01972 244 VLLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGA 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:TIGR01972 324 VFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVV 403
|
170
....*....|....*....
gi 1899807318 160 IIMTGLGTLLTATYSLHMF 178
Cdd:TIGR01972 404 AFLAALGIVLAAAYMLTLY 422
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
1-179 |
1.25e-35 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 131.86 E-value: 1.25e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:PRK05846 252 ILLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:PRK05846 332 IFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVI 411
|
170 180
....*....|....*....|
gi 1899807318 160 IIMTGLGTLLTATYSLHMFL 179
Cdd:PRK05846 412 AFIATTGLILAAVYSLWLYQ 431
|
|
| ND4 |
MTH00204 |
NADH dehydrogenase subunit 4; Provisional |
1-178 |
2.60e-35 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 164750 [Multi-domain] Cd Length: 485 Bit Score: 130.95 E-value: 2.60e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFI-MLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:MTH00204 250 ILLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAA 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:MTH00204 330 VFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGL 409
|
170
....*....|....*....
gi 1899807318 160 IIMTGLGTLLTATYSLHMF 178
Cdd:MTH00204 410 GVLVTSGMVWSAAYSLYLY 428
|
|
| ND4 |
MTH00217 |
NADH dehydrogenase subunit 4; Provisional |
1-178 |
4.39e-35 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214462 [Multi-domain] Cd Length: 482 Bit Score: 130.17 E-value: 4.39e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:MTH00217 247 VLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAA 326
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:MTH00217 327 IFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIV 406
|
170
....*....|....*....
gi 1899807318 160 IIMTGLGTLLTATYSLHMF 178
Cdd:MTH00217 407 GVLASLGMVLSAGYSIYLY 425
|
|
| ND4 |
MTH00226 |
NADH dehydrogenase subunit 4; Provisional |
1-176 |
3.51e-33 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214466 [Multi-domain] Cd Length: 505 Bit Score: 125.42 E-value: 3.51e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYP-FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:MTH00226 271 ILLKLGGYGLVRLSWPILPLGAQNLAPaVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGS 350
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLT 159
Cdd:MTH00226 351 IFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPII 430
|
170
....*....|....*..
gi 1899807318 160 IIMTGLGTLLTATYSLH 176
Cdd:MTH00226 431 GVFVCSGVILSAVYSFY 447
|
|
| ndhD |
CHL00011 |
NADH dehydrogenase subunit 4 |
1-177 |
2.42e-23 |
|
NADH dehydrogenase subunit 4
Pssm-ID: 176954 [Multi-domain] Cd Length: 498 Bit Score: 97.71 E-value: 2.42e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIML-ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:CHL00011 252 ILLKMGAYGLIRINMELLPHAHSIFSPWLVIvGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGA 331
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERThsRTMLLAR--GLQLILPLMTTWWLLANLMNMALPPTINLTGELL----IITS-- 151
Cdd:CHL00011 332 ILQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSqk 409
|
170 180
....*....|....*....|....*..
gi 1899807318 152 -LFNWSPLTIIMTGLGTLLTATYSLHM 177
Cdd:CHL00011 410 yLLMPKILITFVMAIGMILTPIYLLSM 436
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
1-177 |
8.24e-23 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 96.31 E-value: 8.24e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFimLATWGIIMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLT 77
Cdd:PRK06473 246 VLLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSIL 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 78 GAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGL---QLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN 154
Cdd:PRK06473 324 AAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFP 403
|
170 180
....*....|....*....|...
gi 1899807318 155 WSPLTIIMTGLGTLLTATYSLHM 177
Cdd:PRK06473 404 IFPVQTLLCMIGTGLTAVYFLLL 426
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
1-182 |
2.07e-22 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 94.44 E-value: 2.07e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPFIML--ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTG 78
Cdd:COG0651 246 LLTKVGVYAILRVLTLLFGADPALFLGTLLLvlGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAG 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 79 AMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN-WSP 157
Cdd:COG0651 326 ALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEaGAW 405
|
170 180
....*....|....*....|....*
gi 1899807318 158 LTIIMTGLGTLLTATYSLHMFLTTQ 182
Cdd:COG0651 406 LLAAVLLLSSLLTLAYFVRIFGRAQ 430
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
1-177 |
1.42e-20 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 89.71 E-value: 1.42e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRIT-PMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:PRK12561 226 VLLKMGGYALIRFNvQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGA 305
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI---ITSLFNWS 156
Cdd:PRK12561 306 MLQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITSSDVYS 385
|
170 180
....*....|....*....|....*
gi 1899807318 157 PL----TIIMTGLGTLLTATYSLHM 177
Cdd:PRK12561 386 STfrtiTILLAAVGLILTPIYLLSM 410
|
|
| ND4 |
MTH00094 |
NADH dehydrogenase subunit 4; Provisional |
1-192 |
1.90e-20 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177157 [Multi-domain] Cd Length: 403 Bit Score: 88.81 E-value: 1.90e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRItpmLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:MTH00094 192 LLLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGL 268
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:MTH00094 269 MMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSF 348
|
170 180 190
....*....|....*....|....*....|..
gi 1899807318 161 IMTGLGTLLTATYSLHMFLTTQRNKPPTNINN 192
Cdd:MTH00094 349 FFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNN 380
|
|
| PRK02546 |
PRK02546 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
1-177 |
9.66e-19 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 235050 [Multi-domain] Cd Length: 525 Bit Score: 84.37 E-value: 9.66e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYP-FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:PRK02546 254 ILLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGA 333
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLII----TSLFNW 155
Cdd:PRK02546 334 MLQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFvgfaTSDAYT 413
|
170 180
....*....|....*....|....*
gi 1899807318 156 SPLTIIMTGL---GTLLTATYSLHM 177
Cdd:PRK02546 414 LPFRVVVVFLaavGVILTPIYLLSM 438
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
1-173 |
8.46e-16 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 75.90 E-value: 8.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTKLYYPfiMLATWGIIMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLT 77
Cdd:PRK07363 246 VLAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGTISViygALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLL 323
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 78 GAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLI---LPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN 154
Cdd:PRK07363 324 GAVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFS 403
|
170
....*....|....*....
gi 1899807318 155 WSPLTIIMTGLGTLLTATY 173
Cdd:PRK07363 404 TFPIPTLLCIVASGLTAVY 422
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-215 |
4.43e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 70.77 E-value: 4.43e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRI-------TPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTP 73
Cdd:PRK12667 264 LVVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQ 343
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 74 WSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF 153
Cdd:PRK12667 344 LGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALL 423
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807318 154 NWSP-LTIIMTGLGTLLTATYSLHMFLTTQRNKPPTNINntwpTQTREHLLMTLHIVPMALLL 215
Cdd:PRK12667 424 ESGFyLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEE----VEHKESPSMSVVILVLALAV 482
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
4-226 |
6.34e-14 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 70.29 E-value: 6.34e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRIT----PMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 79
Cdd:PRK08375 246 KVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAG 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 80 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF---NWS 156
Cdd:PRK08375 326 LLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWL 405
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 157 PLTIIMtgLGTLLTATYSLHMFLTTQRNKPPtniNNTWPTQTREHLLMTLHIVPMALLlmkpALIMGPFT 226
Cdd:PRK08375 406 VLAVLL--ASSLLALLYFLRIWYRAFFGPPP---PGSEAPKQEAPLGMLAPSLALALL----SLLLGIYA 466
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
44-223 |
1.49e-12 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 66.49 E-value: 1.49e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 44 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMT 123
Cdd:PRK06458 300 LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG 379
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 124 TWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTIIMTGLGTLLTATYSLHMFLTTQRNKPPtninntwPTQTREHLL 203
Cdd:PRK06458 380 WGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVRRVAGMVFGEP-------PEAVNRGDL 452
|
170 180
....*....|....*....|
gi 1899807318 204 MTLHIVPMALLLMKPaLIMG 223
Cdd:PRK06458 453 GWLTTSPMFVHLVLV-LVLG 471
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
37-175 |
1.16e-11 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 63.91 E-value: 1.16e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 37 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQ 116
Cdd:PRK12650 284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899807318 117 LILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF-----NWSP-LTIIMTGLGTLLTATYSL 175
Cdd:PRK12650 364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVvLLLVGAALGAVFTFAYSA 428
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
4-168 |
2.44e-11 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 63.01 E-value: 2.44e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRITPMLNplSTKLYypFIMLATWG---IIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:PRK12647 239 KAGIYLLARLNPVLG--GTPLW--QTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAV 314
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:PRK12647 315 LFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSL 394
|
....*...
gi 1899807318 161 IMTGLGTL 168
Cdd:PRK12647 395 ILTVAAVL 402
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
37-214 |
4.37e-11 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 62.09 E-value: 4.37e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 37 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQ 116
Cdd:COG1009 287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLR 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 117 LILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF---NWSPLTIIMTGLGTLLTATYSLHMFLTTQRNKPPtninnt 193
Cdd:COG1009 364 KKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLFFLVFFGKPR------ 437
|
170 180
....*....|....*....|....
gi 1899807318 194 WPTQTREH---LLMTlhiVPMALL 214
Cdd:COG1009 438 PKTPKHPHespWLMT---LPLVVL 458
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
1-153 |
8.04e-08 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 52.43 E-value: 8.04e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRItpMLNPLSTKLYYPFIML------ATWGIIMTssicLRQTDLKSLIAYSSVSHMGLVIAATLIQTPW 74
Cdd:PRK08667 246 VMLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIF 319
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 75 SLTG--AMALM---------IAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLT 143
Cdd:PRK08667 320 GVYGldTLALLalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFA 399
|
170
....*....|
gi 1899807318 144 GELLIITSLF 153
Cdd:PRK08667 400 SELLLYESFF 409
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
4-175 |
2.57e-07 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 51.08 E-value: 2.57e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRITPMLNPLSTkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALM 83
Cdd:PRK12644 247 KAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAML 325
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 84 IAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLAnLMNMA-LPPTINLTGELLIITSLFN------WS 156
Cdd:PRK12644 326 LAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAKEAALEAVLHdgalgpAG 404
|
170
....*....|....*....
gi 1899807318 157 PLTIIMTGLGTLLTATYSL 175
Cdd:PRK12644 405 PVVLAGIVLGSILTVAYSL 423
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
29-203 |
3.21e-07 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 50.59 E-value: 3.21e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 29 IMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRT 108
Cdd:PRK06589 284 IFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQ 363
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 109 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWS--PLTIIMTGLGTLLTATYSLHMFLTTQRNKP 186
Cdd:PRK06589 364 VDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpWLSIIVMLVVIASSILSALYLLKILSSIYK 443
|
170
....*....|....*..
gi 1899807318 187 PTNINNTWPTQTREHLL 203
Cdd:PRK06589 444 PSLSENSFITKSLPYLM 460
|
|
| PRK08676 |
PRK08676 |
hydrogenase membrane subunit; Validated |
1-94 |
5.00e-07 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 181537 [Multi-domain] Cd Length: 485 Bit Score: 49.75 E-value: 5.00e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPML--NPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTG 78
Cdd:PRK08676 247 TVLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFW 326
|
90
....*....|....*.
gi 1899807318 79 AMALMIAHGLTSSLLF 94
Cdd:PRK08676 327 MLFHMLAHSLVKSGLF 342
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
4-165 |
9.77e-07 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 48.99 E-value: 9.77e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRITPMLNPLS--TKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 81
Cdd:PRK08377 250 KAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVF 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 82 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPptinltgelliitsLFN--WSPLT 159
Cdd:PRK08377 330 HMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIP--------------LFNvfWSKFR 395
|
....*.
gi 1899807318 160 IIMTGL 165
Cdd:PRK08377 396 IILAGL 401
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
2-152 |
1.65e-06 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 48.45 E-value: 1.65e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 2 LLKLGGYGIVRITPMLnpLSTKLY-------------YPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAAT 68
Cdd:PRK08668 238 LSKLGAYGFLLVLYVL--PGTKLFsefgtyrgvplfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGL 315
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 69 LIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI 148
Cdd:PRK08668 316 GLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLI 395
|
....
gi 1899807318 149 ITSL 152
Cdd:PRK08668 396 FEAL 399
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
28-214 |
1.83e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 48.19 E-value: 1.83e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 28 FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANT---NYERT 104
Cdd:PRK12662 282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 105 HSRTMLlarGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN---WSPLTIIMTGLGTLLTATYSL--HMFL 179
Cdd:PRK12662 362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaWIGLVVLLVGSGLSVIYVWKIveALYF 438
|
170 180 190
....*....|....*....|....*....|....*
gi 1899807318 180 ttqrnKPPTNINNTWPTQTREHLLMTLHIVPMALL 214
Cdd:PRK12662 439 -----ESRMVESKANDKAFKTPNAMVLCIWIMAIL 468
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-170 |
2.04e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 48.17 E-value: 2.04e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGG-YGIVRI-----TPMLNPLStkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVI------AAT 68
Cdd:PRK08376 259 LVIKQAGlYALARVlfsiyGPAINLAT--VGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvgLAA 336
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 69 LIQTPWSLTGAMAL------MIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINL 142
Cdd:PRK08376 337 LGDPAMASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGF 416
|
170 180
....*....|....*....|....*...
gi 1899807318 143 TGELLIITSLFNWSPLTIIMTGLGTLLT 170
Cdd:PRK08376 417 ASKWLIYESSALFNPILGVIAMIGSVLT 444
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
4-169 |
2.73e-06 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 47.66 E-value: 2.73e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLV---IAATLIQTPWSLTGAM 80
Cdd:PRK06525 251 KVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGYMffgLSLAILGSRLALEGSI 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 160
Cdd:PRK06525 331 AYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYW 410
|
....*....
gi 1899807318 161 IMTGLGTLL 169
Cdd:PRK06525 411 ILLPAMVLL 419
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
4-167 |
3.02e-06 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 47.64 E-value: 3.02e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 4 KLGGYGIVRITPMLNplstKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIqtpwsltgAMALM 83
Cdd:PRK07234 228 KAGVFPLVRCALDVP----GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYA 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 84 IAHGLTSSLLFCLANTNYERTHS--RTMLLARGLQLILplmttwwLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 161
Cdd:PRK07234 296 LAHGLVKSTLFLCAGALPSRNFTelISQMLGIGKWIPL-------TMASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALN 368
|
....*.
gi 1899807318 162 MTGLGT 167
Cdd:PRK07234 369 LAAVGT 374
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
44-154 |
1.34e-05 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 45.49 E-value: 1.34e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 44 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLF-CLANTNYERTHSRTMLLARGLQLILPLM 122
Cdd:COG1007 288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLL 367
|
90 100 110
....*....|....*....|....*....|....
gi 1899807318 123 TtwWLLANLM-NMA-LPPTINLTGELLIITSLFN 154
Cdd:COG1007 368 A--LAMTIFLlSLAgIPPTAGFFGKFYVFSAAVE 399
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
44-90 |
1.54e-05 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 45.20 E-value: 1.54e-05
10 20 30 40
....*....|....*....|....*....|....*....|....*..
gi 1899807318 44 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTS 90
Cdd:PRK05777 289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
2-177 |
4.48e-05 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 43.98 E-value: 4.48e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 2 LLKLGGYGIVRITPMLNpLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLV-----IAATLIQTP--- 73
Cdd:PRK12646 252 MVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQqda 330
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 74 ------WSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLAnLMNMALPPTIN--LTGE 145
Cdd:PRK12646 331 iasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfLSKE 409
|
170 180 190 200
....*....|....*....|....*....|....*....|..
gi 1899807318 146 LLiITSLFNWSPL-------TIIMTGLG---TLLTATYSLHM 177
Cdd:PRK12646 410 MF-LDALTQTGQLsqfslisMIIIVFIGviaSIFTFTYALYM 450
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
2-181 |
5.54e-05 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 43.60 E-value: 5.54e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 2 LLKLGGYGIVRITPMLNplSTKLYYPFIML-ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPwslTGAM 80
Cdd:MTH00207 221 LVTAGVFLLIRFYPFLS--STYWFNPALLLtASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP---KLAL 295
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLFCLANTN-YERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITS--LFNWSP 157
Cdd:MTH00207 296 FHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESslFYPHNS 375
|
170 180
....*....|....*....|....
gi 1899807318 158 LTIIMTGLGTLLTATYSLHMFLTT 181
Cdd:MTH00207 376 LMILMIFLATALTAAYSTRFTLAV 399
|
|
| ND4 |
MTH00062 |
NADH dehydrogenase subunit 4; Provisional |
3-161 |
6.35e-05 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 214413 [Multi-domain] Cd Length: 417 Bit Score: 43.37 E-value: 6.35e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 3 LKLGGYGIVRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLrqtDLKSLIAYSSVSHMgLVIAATLIQTPWSLTG-AMA 81
Cdd:MTH00062 208 MKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITACSEL---DGKRWLAFLSLSHI-LVPVLGLFVGDWSSINlSFF 283
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 82 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 161
Cdd:MTH00062 284 YCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLF 363
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
29-162 |
2.10e-04 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 41.94 E-value: 2.10e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 29 IMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRT 108
Cdd:PRK06277 270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1899807318 109 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF--NWSPLTIIM 162
Cdd:PRK06277 350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMqaNMPELAIIM 405
|
|
| ND2 |
MTH00144 |
NADH dehydrogenase subunit 2; Provisional |
15-179 |
4.39e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214432 [Multi-domain] Cd Length: 328 Bit Score: 40.64 E-value: 4.39e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 15 PMLNPLSTkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIqTPWSLTgaMALMIAHGLTSSLLF 94
Cdd:MTH00144 135 SNFLDLYW-LAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILH-GSWLMW--MYFLIYIVSSGFLFF 210
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 95 CLANTNYERTHSRTMLLARglqlilPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTIIMTG-LGTLLTATY 173
Cdd:MTH00144 211 SLWSGDSGSMKDLGSLKPS------YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLlLGSLISLFF 284
|
....*.
gi 1899807318 174 SLHMFL 179
Cdd:MTH00144 285 YLSVFF 290
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-222 |
1.02e-03 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 39.93 E-value: 1.02e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLstklyypFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 80
Cdd:TIGR01770 252 VFLRLFLYILFGFSEAWQIF-------LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAVL 324
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTS----SLLFCLANTNYERTHSrtMLLARGLQLILPLMTTWWLLaNLMNMA-LPPTINLTGELLIITSLFN- 154
Cdd:TIGR01770 325 FYIFIYALMSlgafGVLSLLRSYKDEWIEY--ISDFAGLFKTNPILAILILI-FMFSLAgIPPLAGFFGKFYVFFALLKs 401
|
170 180 190 200 210 220 230
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807318 155 ----WSPLTIIMTGLGTLLTATYSLHMFLttqrNKPPTNINNTWPTQTREHLLMTLHIVpMALLLMKPALIM 222
Cdd:TIGR01770 402 glywLAVIAVLTSVIGAFYYLRVVKVMYF----DKPERRIPSNPQSKAQSLLLSISALF-ILFLGLFPSLIL 468
|
|
| ND5 |
MTH00209 |
NADH dehydrogenase subunit 5; Provisional |
2-177 |
1.14e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 39.63 E-value: 1.14e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 2 LLKLGGYGIVRITPMLNplSTKLYYPFIMLA-TWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPwslTGAM 80
Cdd:MTH00209 217 LVTAGVYLLIRFFPSLF--SSPFFSMSLLLLgSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQP---ELAF 291
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 81 ALMIAHGLTSSLLF-CLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF--NWSP 157
Cdd:MTH00209 292 FHLITHALFKALLFiCAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLesNMPI 371
|
170 180
....*....|....*....|
gi 1899807318 158 LTIIMTGLGTLLTATYSLHM 177
Cdd:MTH00209 372 MTLILMFLSTSLTAAYSMRL 391
|
|
| ND2 |
MTH00011 |
NADH dehydrogenase subunit 2; Validated |
30-163 |
1.63e-03 |
|
NADH dehydrogenase subunit 2; Validated
Pssm-ID: 164587 [Multi-domain] Cd Length: 330 Bit Score: 38.99 E-value: 1.63e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 30 MLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLViaaTLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTM 109
Cdd:MTH00011 152 SMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSK 228
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1899807318 110 LLArglqliLPLMTTWWLLANLMNMA-LPPTINLTGELLIITSLFNWSPLTIIMT 163
Cdd:MTH00011 229 ISS------MSQTTSMSLFIMLLSLGgLPPFTGFMPKLMAIETLTSNSMILILLV 277
|
|
| ND2 |
MTH00200 |
NADH dehydrogenase subunit 2; Provisional |
44-225 |
2.10e-03 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177246 [Multi-domain] Cd Length: 347 Bit Score: 38.80 E-value: 2.10e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 44 LRQTDLKSLIAYSSVSHMGLVIAATLIQtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGlqlilPLMT 123
Cdd:MTH00200 170 LNQTQLRKILAYSSIAHLGWLLSGLVYS---PNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKN-----PILS 241
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 124 TWWLLANLMNMALPPTINLTGELLIITSLFNWS-PLTIIMTGLGTLLTATYSLHMFLTTQRNKPPTNINN--TWPTQTRE 200
Cdd:MTH00200 242 MLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGlFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMmsSWRTKSNS 321
|
170 180
....*....|....*....|....*.
gi 1899807318 201 HLLMTLHIV-PMALLLMKPALIMGPF 225
Cdd:MTH00200 322 NLLVGLLLLlSILGLPLTPQLLFLFF 347
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
1-153 |
2.40e-03 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 38.72 E-value: 2.40e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 1 ILLKLGGYGIVRITPMLNPLSTkLYYPFIMLATWGIIMTSSI--CLRQTDLKSLIAYSSVSHMGLVI------------- 65
Cdd:PRK06521 251 VMLKVAIYGILRVVFDLLGAPG-WWWGVLVLALGAISAVLGVlyALAEHDLKRLLAYSTIENIGIIFvglglamvfiayg 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807318 66 ---AATLiqtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINL 142
Cdd:PRK06521 330 mplLAAL-----ALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGF 404
|
170
....*....|.
gi 1899807318 143 TGELLIITSLF 153
Cdd:PRK06521 405 VSEWLLLQSLL 415
|
|
|