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Conserved domains on  [gi|1899807320|gb|QNQ16245|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Proablepharus reginae]

Protein Classification

proton-conducting transporter membrane subunit( domain architecture ID 1562513)

proton-conducting transporter membrane subunit such as NADH dehydrogenase subunit 2, 4, or N, which shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain

EC:  7.1.-.-
Gene Ontology:  GO:0005886

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Proton_antipo_M super family cl39059
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-223 1.40e-132

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


The actual alignment was detected with superfamily member MTH00124:

Pssm-ID: 476862 [Multi-domain]  Cd Length: 457  Bit Score: 381.47  E-value: 1.40e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00124  235 LLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMI 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00124  315 LMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTII 394

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 223
Cdd:MTH00124  395 LTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-223 1.40e-132

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 381.47  E-value: 1.40e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00124  235 LLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMI 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00124  315 LMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTII 394

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 223
Cdd:MTH00124  395 LTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 4.07e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 151.77  E-value: 4.07e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:COG1008   251 LLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAV 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:COG1008   331 LQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLA 410

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899807320 160 IMTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGPF 224
Cdd:COG1008   411 ILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-166 9.95e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 140.91  E-value: 9.95e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:pfam00361 124 LVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIF 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLA-NTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:pfam00361 204 HLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283


                  ....*..
gi 1899807320 160 IMTGLGT 166
Cdd:pfam00361 284 VLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-177 1.71e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 142.00  E-value: 1.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:TIGR01972 245 LLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAV 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:TIGR01972 325 FQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVA 404

                         170
                  ....*....|....*...
gi 1899807320 160 IMTGLGTLLTATYSLHMF 177
Cdd:TIGR01972 405 FLAALGIVLAAAYMLTLY 422
 
Name Accession Description Interval E-value
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 1-223 1.40e-132

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 381.47  E-value: 1.40e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00124  235 LLKLGGYGIIRITLLLPPLSNTLHYPFLTLALWGALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMI 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00124  315 LMIAHGLTSSMLFCLANTNYERTHSRTLLLTRGLQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTII 394

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 223
Cdd:MTH00124  395 LTGLATLITASYTLYMFLSTQRGTLPTHITTIQPTHTREHLLMTLHIIPLLLLILKPELISGT 457
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 1-224 3.95e-124

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 360.00  E-value: 3.95e-124
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00068  235 LLKLGGYGILRISILLTPLSKELSYPFIILALWGVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAII 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00068  315 LMISHGLTSSALFCLANTNYERTHSRTLLLLRGAQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTIL 394

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGPF 224
Cdd:MTH00068  395 ITGLGTLITAAYTLYMFLMTQRGPLPNHLKTLFPTYTREHLLLALHILPMLLLILKPELISGMF 458
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 1-223 1.04e-116

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 341.10  E-value: 1.04e-116
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00110  235 LLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWGMIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATA 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00110  315 LMIAHGLTSSMLFCLANSNYERIHSRTMILARGLQTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITII 394

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGP 223
Cdd:MTH00110  395 LMGLNMLITALYSLYMLITTQRGKLTHHINNIKPSFTRENTLMALHLLPLLLLSLNPKIILGP 457
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 1-222 3.31e-96

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 288.78  E-value: 3.31e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00127  236 LLKLGGYGMMRMMVMLDPLTKELSYPFIILALWGIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALI 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00127  316 LMIAHGLTSSALFCLANTNYERTHSRTMLLARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLA 395

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMG 222
Cdd:MTH00127  396 LTGLGTLITAGYSLYMFLMTQRGPLPDHIIALNPSHTREHLLMALHLLPLLLLILKPELIWG 457
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 1-220 3.11e-89

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 270.66  E-value: 3.11e-89
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00206  231 LLKLGGYGMMRIILILGPSTKLSSYFFIILGLWGSIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALL 310

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00206  311 LMIAHGLVSSALFCLANLLYERSHTRTILGNRGLQMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLP 390

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALI 220
Cdd:MTH00206  391 LLGLGFLFTAIYSLYMFVMTQHGKTPNHLLSLSPSSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 1-221 2.92e-76

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 237.57  E-value: 2.92e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLN-PLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:MTH00044  236 LLKLGGYGLIRLINLFSlPSANNISFILIVFCCWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGAL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:MTH00044  316 ILMIAHGLVSSALFCLANILYERSGTRTLSITRGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSF 395

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807320 160 IMTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 221
Cdd:MTH00044  396 PIIGLATVFGAIYSLLIYQLTNSGSFPSWISNVSPISSREHLLIFLHLLPLILIIINPNIIL 457
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-221 9.75e-69

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 217.71  E-value: 9.75e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00163  223 LLKLGGYGLLRVMSFFSKLGLKFNYIWISISLVGGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLL 302

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00163  303 MMIGHGLCSSGLFCLANIIYERLGSRSLLINKGLLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMI 382

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 221
Cdd:MTH00163  383 FLMLLSFFSAAYSLYLYSYSQHGKYYSGLYSCSSGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 1-222 7.47e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 204.30  E-value: 7.47e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00150  194 LLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSDVKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALI 273

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00150  274 MMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFLFCIINMAAPPSLNLLSEIMIFPSLISYSPWFFV 353

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMG 222
Cdd:MTH00150  354 PLGLMVFLSGLYSLYLYTSIQHGGSSSFLKPFNELKSSEMLLLLLHWVPLLLLILKSDLLFM 415
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 1-220 4.91e-57

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 187.64  E-value: 4.91e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00014  229 LLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVITSLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALA 308

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00014  309 MMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLFPTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAI 388

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALI 220
Cdd:MTH00014  389 LLAITSFLAAAYSLFLYTSTQHGSPPSFMNPLNLFTPRNHTLMTLHLVPLFILILKPDLI 448
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 1-221 1.28e-56

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 186.34  E-value: 1.28e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00205  227 LLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGVMTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAII 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00205  307 MMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLNTFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGI 386

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIM 221
Cdd:MTH00205  387 PLSLISFLSGAYSLYLYSQSQHGKVSSQISSFLAISEREYYILILHWFPLNILILKLKIFI 447
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 1-224 4.07e-43

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 151.77  E-value: 4.07e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:COG1008   251 LLKMGGYGLLRFALPLFPEASAYFAPLLAaLGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAV 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:COG1008   331 LQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLA 410

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899807320 160 IMTGLGTLLTATYSLHMFLTTQRNKLPTNINNTWPTQTREHLLMTLHIVPMALLLMKPALIMGPF 224
Cdd:COG1008   411 ILAALGLILTAAYLLWMYQRVFFGPLKEELAELPDLNPRELAVLAPLAALILLLGLYPQPLLDLI 475
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 1-166 9.95e-41

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 140.91  E-value: 9.95e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:pfam00361 124 LVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLLGSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIF 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLA-NTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:pfam00361 204 HLLTHGLFSAGLFLCAgSVIYRRVHTRNIRDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFL 283


                  ....*..
gi 1899807320 160 IMTGLGT 166
Cdd:pfam00361 284 VLAGVVG 290
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 1-177 1.71e-39

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 142.00  E-value: 1.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:TIGR01972 245 LLKMGTYGFLRFNLPLFPDASLYFAPVLAaLGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVLLGIFSFNELGISGAV 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:TIGR01972 325 FQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVA 404

                         170
                  ....*....|....*...
gi 1899807320 160 IMTGLGTLLTATYSLHMF 177
Cdd:TIGR01972 405 FLAALGIVLAAAYMLTLY 422
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 1-178 4.51e-35

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 130.32  E-value: 4.51e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:PRK05846  253 LLKMGAYGLLRFSLPLFPDASHEFAPIIItLGVIAIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAI 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:PRK05846  333 FQMISHGLSSAALFLLVGVLYDRLHTRDIADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIA 412

                         170
                  ....*....|....*....
gi 1899807320 160 IMTGLGTLLTATYSLHMFL 178
Cdd:PRK05846  413 FIATTGLILAAVYSLWLYQ 431
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 1-177 5.23e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 129.79  E-value: 5.23e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIM-LATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:MTH00217  248 LLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIYGSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAI 327

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:MTH00217  328 FLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVITMPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVG 407

                         170
                  ....*....|....*...
gi 1899807320 160 IMTGLGTLLTATYSLHMF 177
Cdd:MTH00217  408 VLASLGMVLSAGYSIYLY 425
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 1-177 9.90e-35

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 129.03  E-value: 9.90e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFI-MLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:MTH00204  251 LLKLGGYGFLRFSWPLFPAASEYFAPLIvMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAV 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:MTH00204  331 FLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLTMPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLG 410

                         170
                  ....*....|....*...
gi 1899807320 160 IMTGLGTLLTATYSLHMF 177
Cdd:MTH00204  411 VLVTSGMVWSAAYSLYLY 428
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 1-175 2.75e-32

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 122.72  E-value: 2.75e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYP-FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:MTH00226  272 LLKLGGYGLVRLSWPILPLGAQNLAPaVIAMGIVGIVYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSI 351

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:MTH00226  352 FIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLSITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIG 431

                         170
                  ....*....|....*.
gi 1899807320 160 IMTGLGTLLTATYSLH 175
Cdd:MTH00226  432 VFVCSGVILSAVYSFY 447
ndhD CHL00011
NADH dehydrogenase subunit 4
 1-176 1.06e-22

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 95.78  E-value: 1.06e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIML-ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:CHL00011  253 LLKMGAYGLIRINMELLPHAHSIFSPWLVIvGAIQIIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAI 332

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERThsRTMLLAR--GLQLILPLMTTWWLLANLMNMALPPTINLTGELL----IITS--- 150
Cdd:CHL00011  333 LQIISHGFIGAALFFLAGTSYDRI--RLVYLDEmgGIAIPMPKIFTMFSSFSMASLALPGMSGFVAELIvffgIITSqky 410

                         170       180
                  ....*....|....*....|....*.
gi 1899807320 151 LFNWSPLTIIMTGLGTLLTATYSLHM 176
Cdd:CHL00011  411 LLMPKILITFVMAIGMILTPIYLLSM 436
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
1-208 2.04e-22

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 95.15  E-value: 2.04e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFimLATWGIIMT---SSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTG 77
Cdd:PRK06473  247 LLKLGTYGLLRFGVGLFPEAWVYLAPW--LATWAVVSVlygASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILA 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  78 AMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGL---QLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNW 154
Cdd:PRK06473  325 AVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPI 404

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1899807320 155 SPLTIIMTGLGTLLTATYSLHMF-------LTTQRNKLPtniNNTWPTQTREHLLMTLHIV 208
Cdd:PRK06473  405 FPVQTLLCMIGTGLTAVYFLLLVnrvffgrLTAELSNLP---RVLWSERLPALVLAVLIVV 462
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 1-181 3.30e-22

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 94.06  E-value: 3.30e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPFIML--ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 78
Cdd:COG0651   247 LTKVGVYAILRVLTLLFGADPALFLGTLLLvlGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGA 326

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  79 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN-WSPL 157
Cdd:COG0651   327 LFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEaGAWL 406

                         170       180
                  ....*....|....*....|....
gi 1899807320 158 TIIMTGLGTLLTATYSLHMFLTTQ 181
Cdd:COG0651   407 LAAVLLLSSLLTLAYFVRIFGRAQ 430
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-186 4.13e-21

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 91.25  E-value: 4.13e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRIT-PMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:PRK12561  227 LLKMGGYALIRFNvQMLPDAHVYFAPALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAM 306

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI---ITSLFNWSP 156
Cdd:PRK12561  307 LQMISHGLIAAALFFLTGVTYERTHTLSIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITSSDVYSS 386

                         170       180       190
                  ....*....|....*....|....*....|....*...
gi 1899807320 157 L----TIIMTGLGTLLTATYSLHM----FLTTQRNKLP 186
Cdd:PRK12561  387 TfrtiTILLAAVGLILTPIYLLSMlrrvFYGPRSELLP 424
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 1-191 1.72e-20

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 88.81  E-value: 1.72e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRItpmLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:MTH00094  193 LLKLGTAGFLRI---LGSLNFVYNNFWIIFSLLGMILSSFCCVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLM 269

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00094  270 MMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFFGLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFF 349

                         170       180       190
                  ....*....|....*....|....*....|.
gi 1899807320 161 MTGLGTLLTATYSLHMFLTTQRNKLPTNINN 191
Cdd:MTH00094  350 FIFFYFLVSFYYSLFLIVSSFMGKKFSNFNN 380
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 1-176 3.02e-18

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 83.22  E-value: 3.02e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYP-FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:PRK02546  255 LLKMGGYALLRMNAGMLPDAHAQFAPlLIVLGVVNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAM 334

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLII----TSLFNWS 155
Cdd:PRK02546  335 LQMISHGLIGASLFFLVGATYDRTHTLMLDEMGGVGQKMRKMFAMWTACSLASLALPGMSGFVAELMVFvgfaTSDAYTL 414

                         170       180
                  ....*....|....*....|....
gi 1899807320 156 PLTIIMTGL---GTLLTATYSLHM 176
Cdd:PRK02546  415 PFRVVVVFLaavGVILTPIYLLSM 438
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
1-172 2.58e-15

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 74.36  E-value: 2.58e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNPLSTKLYYPfiMLATWG---IIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTG 77
Cdd:PRK07363  247 LAKLGTYGLLRFGLQLFPQTWSLVAP--GLAIIGtisVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLG 324

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  78 AMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLI---LPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNW 154
Cdd:PRK07363  325 AVAQMISHGLILALLFHLVGIVERKVGTRDLDVLNGLMNPirgLPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFST 404

                         170
                  ....*....|....*...
gi 1899807320 155 SPLTIIMTGLGTLLTATY 172
Cdd:PRK07363  405 FPIPTLLCIVASGLTAVY 422
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 1-214 1.59e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 69.23  E-value: 1.59e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRI-------TPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPW 73
Cdd:PRK12667  265 VVNVGAYAIIRFlytifgiSPSLIDFRAALSPILIILGAVSAIIGALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTQL 344

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  74 SLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFN 153
Cdd:PRK12667  345 GLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSKLLLFNALLE 424

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1899807320 154 WSP-LTIIMTGLGTLLTATYSLHMFLTTQRNKLPTNINntwpTQTREHLLMTLHIVPMALLL 214
Cdd:PRK12667  425 SGFyLPALVLLIASAISLVGYFRAWYSLFFGKPKSGEE----VEHKESPSMSVVILVLALAV 482
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-172 2.24e-13

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 68.75  E-value: 2.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRIT----PMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 78
Cdd:PRK08375  246 KVAVYALIRIYftvfGGDFRFALGLGWLLAVLALLSMLVGSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLALAAG 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  79 MALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF---NWS 155
Cdd:PRK08375  326 LLHLLHHALMKGALFLAAGAIEVTYGTRRLSELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVGAVeagQWL 405

                         170
                  ....*....|....*..
gi 1899807320 156 PLTIIMtgLGTLLTATY 172
Cdd:PRK08375  406 VLAVLL--ASSLLALLY 420
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 43-222 4.41e-12

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 64.95  E-value: 4.41e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  43 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMT 122
Cdd:PRK06458  300 LRQRDIKRLFAYSSIEHMGLIAFALGIGGPLGIFAALLHMLNHSLTKSAIFFASGNVLQKYGTRDINVIRGLLKVSPLTG 379

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320 123 TWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTIIMTGLGTLLTATYSLHMFLTTQrnklptnINNTWPTQTREHLL 202
Cdd:PRK06458  380 WGLMLGALAIAGMPPFGVFISEFLILTAGLARGPLLIAILLLLLLTLAFAALVRRVAGM-------VFGEPPEAVNRGDL 452

                         170       180
                  ....*....|....*....|
gi 1899807320 203 MTLHIVPMALLLMKPaLIMG 222
Cdd:PRK06458  453 GWLTTSPMFVHLVLV-LVLG 471
PRK12650 PRK12650
DUF4040 family protein;
36-174 1.12e-11

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 63.91  E-value: 1.12e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  36 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQ 115
Cdd:PRK12650  284 LMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTLAHALFKSSLFMLIGVVDHQAGTRDIRRLGSLW 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1899807320 116 LILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF-----NWSP-LTIIMTGLGTLLTATYSL 174
Cdd:PRK12650  364 RRMPFTFVSVTIAALSMAAVPPLFGFVSKEGMLTAFLeapggNAGVvLLLVGAALGAVFTFAYSA 428
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-167 3.30e-11

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 62.63  E-value: 3.30e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRITPMLNplSTKLYypFIMLATWG---IIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAM 79
Cdd:PRK12647  239 KAGIYLLARLNPVLG--GTPLW--QTILPLFGgltMLTGALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAV 314

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:PRK12647  315 LFLVAHSLYKGALFMVAGIIDHETGTRDITKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSL 394


                  ....*...
gi 1899807320 160 IMTGLGTL 167
Cdd:PRK12647  395 ILTVAAVL 402
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 36-180 3.27e-10

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 59.40  E-value: 3.27e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  36 IMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQ 115
Cdd:COG1009   287 LFAALIALAQTDIKRVLAYSTVSQLGYMFLALGVG---AYVAALFHLLTHAFFKALLFLGAGSVIHATGTRDIRKMGGLR 363

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1899807320 116 LILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF---NWSPLTIIMTGLGTLLTATYSLHMFLTT 180
Cdd:COG1009   364 KKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLFFLV 431
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 1-152 1.28e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 51.66  E-value: 1.28e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRItpMLNPLSTKLYYPFIML------ATWGIIMTssicLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWS 74
Cdd:PRK08667  247 MLKVAVYGLVRF--LMDVLSPELWWGVLILlagsisALLGVIYA----LKEHDLKGLLAYSSIENIGIILMGIGLYVIFG 320

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  75 LTG--AMALM---------IAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTG 143
Cdd:PRK08667  321 VYGldTLALLalggalfhsLNHALFKSLLFLTAGSVVHATGTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFAS 400


                  ....*....
gi 1899807320 144 ELLIITSLF 152
Cdd:PRK08667  401 ELLLYESFF 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 1-93 2.77e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.52  E-value: 2.77e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPML--NPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGA 78
Cdd:PRK08676  248 VLNIGIYGILRLSALLrqSGAAEQFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWM 327

                          90
                  ....*....|....*
gi 1899807320  79 MALMIAHGLTSSLLF 93
Cdd:PRK08676  328 LFHMLAHSLVKSGLF 342
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 28-202 3.44e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 50.20  E-value: 3.44e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  28 IMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRT 107
Cdd:PRK06589  284 IFIPIVSIFYSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQ 363

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320 108 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWS--PLTIIMTGLGTLLTATYSLHMFLTTQRNKL 185
Cdd:PRK06589  364 VDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNqpWLSIIVMLVVIASSILSALYLLKILSSIYK 443

                         170
                  ....*....|....*..
gi 1899807320 186 PTNINNTWPTQTREHLL 202
Cdd:PRK06589  444 PSLSENSFITKSLPYLM 460
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 3-174 3.52e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 50.69  E-value: 3.52e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRITPMLNPLSTkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALM 82
Cdd:PRK12644  247 KAGIYLVARLAPGFADVPV-WRPTVLVLGLATMLLGGWRALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLAML 325

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  83 IAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLAnLMNMA-LPPTINLTGELLIITSLFN------WS 155
Cdd:PRK12644  326 LAHALFKAALFLVVGIIDHSTGTRDIRKLSGLGRRQPVLAVVAALA-AASMAgLPPLLGFVAKEAALEAVLHdgalgpAG 404

                         170
                  ....*....|....*....
gi 1899807320 156 PLTIIMTGLGTLLTATYSL 174
Cdd:PRK12644  405 PVVLAGIVLGSILTVAYSL 423
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 1-213 9.08e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.22  E-value: 9.08e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLnpLSTKLY-------------YPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAAT 67
Cdd:PRK08668  238 LSKLGAYGFLLVLYVL--PGTKLFsefgtyrgvplfnYILAWLGNISIIVGTLMAILQEDIKKLIAYSSVANGGYILVGL 315

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  68 LIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI 147
Cdd:PRK08668  316 GLGTSLGFAGGLFHVFNHALFKGLFFLIFAAVIYRTGTTKISEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASKWLI 395

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1899807320 148 ITSLF-NWSPLTIIMTGLGTLLTATYSLHMFLTTQRNKLPTNINNtwptqTREHLLMTLhiVPMALL 213
Cdd:PRK08668  396 FEALIsKGMPITAFMAFFGSIGSFLYVFRPLAGVFLGQLPSDHKD-----VKEAPLPML--IPMAIL 455
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 3-164 1.43e-06

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 48.61  E-value: 1.43e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRITPMLNPLS--TKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMA 80
Cdd:PRK08377  250 KAGLYAMARILYLMQNANgwSSVLKLVIIMATLTVFFAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVF 329

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPptinltgelliitsLFN--WSPLT 158
Cdd:PRK08377  330 HMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGKRMPLTALALTIGALSTVGIP--------------LFNvfWSKFR 395


                  ....*.
gi 1899807320 159 IIMTGL 164
Cdd:PRK08377  396 IILAGL 401
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-169 2.33e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 47.78  E-value: 2.33e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   5 GGYGIIRI-----TPMLNPLStkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVI------AATLIQTPW 73
Cdd:PRK08376  265 GLYALARVlfsiyGPAINLAT--VGWVIIILGCLTMFVGVAMAVVQKDVKRLLAYHSVSQIGYMLlglgvgLAALGDPAM 342

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  74 SLTGAMAL------MIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLI 147
Cdd:PRK08376  343 ASYGEIALaggiyhIVNHALYKALLFLTAGAVIYETGTRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422

                         170       180
                  ....*....|....*....|..
gi 1899807320 148 ITSLFNWSPLTIIMTGLGTLLT 169
Cdd:PRK08376  423 YESSALFNPILGVIAMIGSVLT 444
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 27-150 3.01e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 47.42  E-value: 3.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  27 FIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANT---NYERT 103
Cdd:PRK12662  282 FMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVSGSisyHFGTT 361

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 1899807320 104 HSRTMLlarGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITS 150
Cdd:PRK12662  362 KLEDCL---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDA 405
PRK06525 PRK06525
hydrogenase 4 subunit D; Validated
 3-168 3.75e-06

hydrogenase 4 subunit D; Validated


Pssm-ID: 180606 [Multi-domain]  Cd Length: 479  Bit Score: 47.28  E-value: 3.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMG---LVIAATLIQTPWSLTGAM 79
Cdd:PRK06525  251 KVGVYIFARAIQSMGPIPHVIGYVGAVMAIVTLLYGFLMYLPQQDMKRLLAYSTITQLGymfFGLSLAILGSRLALEGSI 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTI 159
Cdd:PRK06525  331 AYIFNHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYW 410


                  ....*....
gi 1899807320 160 IMTGLGTLL 168
Cdd:PRK06525  411 ILLPAMVLL 419
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 3-166 1.21e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 1.21e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   3 KLGGYGIIRITPMLNplstKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIqtpwsltgAMALM 82
Cdd:PRK07234  228 KAGVFPLVRCALDVP----GLDLIVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQLGFILAAPLV--------GGLYA 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  83 IAHGLTSSLLFCLANTNYERTHS--RTMLLARGLQLILplmttwwLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:PRK07234  296 LAHGLVKSTLFLCAGALPSRNFTelISQMLGIGKWIPL-------TMASFSIAGFPLLAGFVSKVLTLKNLLPWQAIALN 368


                  ....*.
gi 1899807320 161 MTGLGT 166
Cdd:PRK07234  369 LAAVGT 374
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
43-89 1.61e-05

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 45.20  E-value: 1.61e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1899807320  43 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTS 89
Cdd:PRK05777  289 LSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYSAVLFYLLAYLFMT 335
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 43-153 1.66e-05

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 45.11  E-value: 1.66e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  43 LRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLF-CLANTNYERTHSRTMLLARGLQLILPLM 121
Cdd:COG1007   288 LAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVSAALFYLLAYLFMNLGAFaVILLLSRKGGEAEEIEDLAGLARRSPLL 367

                          90       100       110
                  ....*....|....*....|....*....|....
gi 1899807320 122 TtwWLLANLM-NMA-LPPTINLTGELLIITSLFN 153
Cdd:COG1007   368 A--LAMTIFLlSLAgIPPTAGFFGKFYVFSAAVE 399
ND5 MTH00207
NADH dehydrogenase subunit 5; Provisional
 1-180 2.42e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 164753 [Multi-domain]  Cd Length: 572  Bit Score: 44.76  E-value: 2.42e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNplSTKLYYPFIML-ATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPwslTGAM 79
Cdd:MTH00207  221 LVTAGVFLLIRFYPFLS--STYWFNPALLLtASLTMLMAGLSAMTECDMKKIIALSTLSQLGVMMASLGLGMP---KLAL 295

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLFCLANTN-YERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITS--LFNWSP 156
Cdd:MTH00207  296 FHLITHALFKALLFVCAGSLiHSHHHSQDLRTMGNLTNQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESslFYPHNS 375

                         170       180
                  ....*....|....*....|....
gi 1899807320 157 LTIIMTGLGTLLTATYSLHMFLTT 180
Cdd:MTH00207  376 LMILMIFLATALTAAYSTRFTLAV 399
PRK12646 PRK12646
DUF4040 family protein;
1-176 4.50e-05

DUF4040 family protein;


Pssm-ID: 183646 [Multi-domain]  Cd Length: 800  Bit Score: 43.98  E-value: 4.50e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNpLSTKLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLV-----IAATLIQTP--- 72
Cdd:PRK12646  252 MVKAGIFLLFRFTPLLG-LSNMYIYIVTFVGLITMLFGSITALKQWDLKGILAYSTISQLGMImamvgIGGGYAQHQqda 330

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  73 ------WSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLAnLMNMALPPTIN--LTGE 144
Cdd:PRK12646  331 iasiyvFVLFAALFHLMNHAIFKCALFMGVGIIDHEAGTRDIRILSGMRQLFPKMNLVMTIA-ALSMAGVPFLNgfLSKE 409

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 1899807320 145 LLiITSLFNWSPL-------TIIMTGLG---TLLTATYSLHM 176
Cdd:PRK12646  410 MF-LDALTQTGQLsqfslisMIIIVFIGviaSIFTFTYALYM 450
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 2-160 8.11e-05

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 42.99  E-value: 8.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   2 LKLGGYGIIRITPMLNPLSTKLYYPFIMLATWGIIMTSSICLrqtDLKSLIAYSSVSHMgLVIAATLIQTPWSLTG-AMA 80
Cdd:MTH00062  208 MKLGLLGVYRFCGFIFSGSFLGYLFLCCLFSVFFLITACSEL---DGKRWLAFLSLSHI-LVPVLGLFVGDWSSINlSFF 283

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  81 LMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTII 160
Cdd:MTH00062  284 YCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLVLRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLF 363
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
28-161 2.21e-04

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 41.94  E-value: 2.21e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  28 IMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRT 107
Cdd:PRK06277  270 IALSVLAMVFGVVMALLQTDYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAINHVIYKSALFLGAGIVSYRTKTSN 349

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1899807320 108 MLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF--NWSPLTIIM 161
Cdd:PRK06277  350 LRKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSKLMLAQAAMqaNMPELAIIM 405
ND5 MTH00209
NADH dehydrogenase subunit 5; Provisional
 1-176 5.76e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 177252 [Multi-domain]  Cd Length: 564  Bit Score: 40.78  E-value: 5.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   1 LLKLGGYGIIRITPMLNplSTKLYYPFIMLA-TWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIQTPwslTGAM 79
Cdd:MTH00209  217 LVTAGVYLLIRFFPSLF--SSPFFSMSLLLLgSLTTLMASMSANVESDLKKIIALSTLSQLGLMMCSLGLNQP---ELAF 291

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  80 ALMIAHGLTSSLLF-CLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTGELLIITSLF--NWSP 156
Cdd:MTH00209  292 FHLITHALFKALLFiCAGNIIHSHGHSQDIRMVGNLWYQMPITSICLNIANLSLCGIPFLAGFYSKDLILESMLesNMPI 371

                         170       180
                  ....*....|....*....|
gi 1899807320 157 LTIIMTGLGTLLTATYSLHM 176
Cdd:MTH00209  372 MTLILMFLSTSLTAAYSMRL 391
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 14-178 6.15e-04

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 40.25  E-value: 6.15e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  14 PMLNPLSTkLYYPFIMLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLVIAATLIqTPWSLTgaMALMIAHGLTSSLLF 93
Cdd:MTH00144  135 SNFLDLYW-LAYLLCVISVLSALVGSIGGLNQTQVRALLAYSSISHTGWMLVAILH-GSWLMW--MYFLIYIVSSGFLFF 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  94 CLANTNYERTHSRTMLLARglqlilPLMTTWWLLANLMNMALPPTINLTGELLIITSLFNWSPLTIIMTG-LGTLLTATY 172
Cdd:MTH00144  211 SLWSGDSGSMKDLGSLKPS------YKTGLSIISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLlLGSLISLFF 284


                  ....*.
gi 1899807320 173 SLHMFL 178
Cdd:MTH00144  285 YLSVFF 290
PRK06521 PRK06521
hydrogenase 4 subunit B; Validated
 2-152 1.04e-03

hydrogenase 4 subunit B; Validated


Pssm-ID: 235820 [Multi-domain]  Cd Length: 667  Bit Score: 39.87  E-value: 1.04e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320   2 LKLGGYGIIRITPMLNPLSTkLYYPFIMLATWGIIMTSSI--CLRQTDLKSLIAYSSVSHMGLVI--------------- 64
Cdd:PRK06521  253 LKVAIYGILRVVFDLLGAPG-WWWGVLVLALGAISAVLGVlyALAEHDLKRLLAYSTIENIGIIFvglglamvfiaygmp 331

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  65 -AATLiqtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGLQLILPLMTTWWLLANLMNMALPPTINLTG 143
Cdd:PRK06521  332 lLAAL-----ALTAALYHLLNHALFKSLLFLGAGAVLHATGTRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVS 406


                  ....*....
gi 1899807320 144 ELLIITSLF 152
Cdd:PRK06521  407 EWLLLQSLL 415
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 29-162 2.08e-03

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 38.61  E-value: 2.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  29 MLATWGIIMTSSICLRQTDLKSLIAYSSVSHMGLViaaTLIQTPWSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTM 108
Cdd:MTH00011  152 SMAAMSALAGGLGGMNQTQLRPLLAYSSIGHMGWM---TMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSK 228

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 1899807320 109 LLArglqliLPLMTTWWLLANLMNMA-LPPTINLTGELLIITSLFNWSPLTIIMT 162
Cdd:MTH00011  229 ISS------MSQTTSMSLFIMLLSLGgLPPFTGFMPKLMAIETLTSNSMILILLV 277
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 43-224 7.66e-03

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 36.87  E-value: 7.66e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320  43 LRQTDLKSLIAYSSVSHMGLVIAATLIQtpwSLTGAMALMIAHGLTSSLLFCLANTNYERTHSRTMLLARGlqlilPLMT 122
Cdd:MTH00200  170 LNQTQLRKILAYSSIAHLGWLLSGLVYS---PNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKN-----PILS 241

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1899807320 123 TWWLLANLMNMALPPTINLTGELLIITSLFNWS-PLTIIMTGLGTLLTATYSLHMFLTTQRNKLPTNINN--TWPTQTRE 199
Cdd:MTH00200  242 MLLGLTLLSLGGLPPLTGFFPKWLILQELSKQGlFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMmsSWRTKSNS 321

                         170       180
                  ....*....|....*....|....*.
gi 1899807320 200 HLLMTLHIV-PMALLLMKPALIMGPF 224
Cdd:MTH00200  322 NLLVGLLLLlSILGLPLTPQLLFLFF 347
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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