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Conserved domains on  [gi|1947638919|gb|QQA13477|]
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LytTR family transcriptional regulator DNA-binding domain-containing protein [Clostridium perfringens]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LytT super family cl43828
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 2-55 1.51e-06

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG3279:

Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 42.50  E-value: 1.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1947638919   2 FEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIRFII 55
Cdd:COG3279   155 IEAEGNYVKIHTKDKKYLVRKT-LKELEEKLPPKQFFRVHRSYIVNLDKIKEIE 207
 
Name Accession Description Interval E-value
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 2-55 1.51e-06

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 42.50  E-value: 1.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1947638919   2 FEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIRFII 55
Cdd:COG3279   155 IEAEGNYVKIHTKDKKYLVRKT-LKELEEKLPPKQFFRVHRSYIVNLDKIKEIE 207
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 2-55 4.07e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 39.87  E-value: 4.07e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1947638919   2 FEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIRFII 55
Cdd:smart00850 14 IEAEGNYVTVHTKDGTYLVRGT-LKELEERLDPDNFFRIHRSYIVNLDHIKEIE 66
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 1-52 6.92e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 39.11  E-value: 6.92e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1947638919  1 MFEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIR 52
Cdd:pfam04397 13 YIEAEDKYVTIHTANGEYLTRGT-LKELEEKLPPDGFFRCHRSYLVNLNKIK 63
 
Name Accession Description Interval E-value
LytT COG3279
DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction ...
 2-55 1.51e-06

DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms];


Pssm-ID: 442510 [Multi-domain]  Cd Length: 235  Bit Score: 42.50  E-value: 1.51e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1947638919   2 FEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIRFII 55
Cdd:COG3279   155 IEAEGNYVKIHTKDKKYLVRKT-LKELEEKLPPKQFFRVHRSYIVNLDKIKEIE 207
LytTR smart00850
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 2-55 4.07e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 197918 [Multi-domain]  Cd Length: 96  Bit Score: 39.87  E-value: 4.07e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 1947638919   2 FEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIRFII 55
Cdd:smart00850 14 IEAEGNYVTVHTKDGTYLVRGT-LKELEERLDPDNFFRIHRSYIVNLDHIKEIE 66
LytTR pfam04397
LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional ...
 1-52 6.92e-06

LytTr DNA-binding domain; This domain is found in a variety of bacterial transcriptional regulators. The domain binds to a specific DNA sequence pattern.


Pssm-ID: 427920 [Multi-domain]  Cd Length: 98  Bit Score: 39.11  E-value: 6.92e-06
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|..
gi 1947638919  1 MFEINNRIFTIYCYDKTEEIFYSiMNKLNNNLDENEFIPIHRSYIVNITKIR 52
Cdd:pfam04397 13 YIEAEDKYVTIHTANGEYLTRGT-LKELEEKLPPDGFFRCHRSYLVNLNKIK 63
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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