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Conserved domains on  [gi|1959478972|gb|QQX06836|]
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brain derived neurotrophic factor, partial [Graptemys versa]

Protein Classification

nerve growth factor family protein( domain architecture ID 10639753)

nerve growth factor family protein similar to brain-derived neurotrophic factor (BDNF) and venom nerve growth factor (v-NGF)

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
124-229 3.16e-61

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


:

Pssm-ID: 128445  Cd Length: 106  Bit Score: 186.92  E-value: 3.16e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959478972  124 ARRGELSVCDSTSEWVTAaeKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNPKGYTKEGCRGIDKRHWNSQCRTTQ 203
Cdd:smart00140   1 SHRGEYSVCDSISVWVTD--KTTATDISGNEVTVLGEVPVNNGPLKQYFYETRCKSPNPVKSGCRGIDSRHWNSQCKTTQ 78
                           90       100
                   ....*....|....*....|....*.
gi 1959478972  204 SYVRALTMDNKKRVGWRFIRIDTSCV 229
Cdd:smart00140  79 TYVRALTSDANKRVGWRFIRIDTACV 104
 
Name Accession Description Interval E-value
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
124-229 3.16e-61

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 186.92  E-value: 3.16e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959478972  124 ARRGELSVCDSTSEWVTAaeKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNPKGYTKEGCRGIDKRHWNSQCRTTQ 203
Cdd:smart00140   1 SHRGEYSVCDSISVWVTD--KTTATDISGNEVTVLGEVPVNNGPLKQYFYETRCKSPNPVKSGCRGIDSRHWNSQCKTTQ 78
                           90       100
                   ....*....|....*....|....*.
gi 1959478972  204 SYVRALTMDNKKRVGWRFIRIDTSCV 229
Cdd:smart00140  79 TYVRALTSDANKRVGWRFIRIDTACV 104
NGF pfam00243
Nerve growth factor family;
125-229 7.72e-55

Nerve growth factor family;


Pssm-ID: 459728  Cd Length: 112  Bit Score: 170.99  E-value: 7.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959478972 125 RRGELSVCDSTSEWVTaaEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNPKGY-TKEGCRGIDKRHWNSQCRTTQ 203
Cdd:pfam00243   2 HRGEYSVCDSVSTWVT--NKTTAVDIRGNEVTVLGEVKTNNGVLKQYFFETKCRAGGPgGGSGCRGIDKRHWNSYCKTKQ 79
                          90       100
                  ....*....|....*....|....*.
gi 1959478972 204 SYVRALTMDNKKrVGWRFIRIDTSCV 229
Cdd:pfam00243  80 SFVRALTIDKNK-VGWRWIRIDTSCV 104
 
Name Accession Description Interval E-value
NGF smart00140
Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of ...
124-229 3.16e-61

Nerve growth factor (NGF or beta-NGF); NGF is important for the development and maintenance of the sympathetic and sensory nervous systems.


Pssm-ID: 128445  Cd Length: 106  Bit Score: 186.92  E-value: 3.16e-61
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959478972  124 ARRGELSVCDSTSEWVTAaeKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNPKGYTKEGCRGIDKRHWNSQCRTTQ 203
Cdd:smart00140   1 SHRGEYSVCDSISVWVTD--KTTATDISGNEVTVLGEVPVNNGPLKQYFYETRCKSPNPVKSGCRGIDSRHWNSQCKTTQ 78
                           90       100
                   ....*....|....*....|....*.
gi 1959478972  204 SYVRALTMDNKKRVGWRFIRIDTSCV 229
Cdd:smart00140  79 TYVRALTSDANKRVGWRFIRIDTACV 104
NGF pfam00243
Nerve growth factor family;
125-229 7.72e-55

Nerve growth factor family;


Pssm-ID: 459728  Cd Length: 112  Bit Score: 170.99  E-value: 7.72e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1959478972 125 RRGELSVCDSTSEWVTaaEKKTAVDMSGATVTVLEKVPVPKGQLKQYFYETKCNPKGY-TKEGCRGIDKRHWNSQCRTTQ 203
Cdd:pfam00243   2 HRGEYSVCDSVSTWVT--NKTTAVDIRGNEVTVLGEVKTNNGVLKQYFFETKCRAGGPgGGSGCRGIDKRHWNSYCKTKQ 79
                          90       100
                  ....*....|....*....|....*.
gi 1959478972 204 SYVRALTMDNKKrVGWRFIRIDTSCV 229
Cdd:pfam00243  80 SFVRALTIDKNK-VGWRWIRIDTSCV 104
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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