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proteasome 26S subunit, partial [Aldabrachelys gigantea]
List of domain hits
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Name | Accession | Description | Interval | E-value | ||
PTZ00361 super family | cl33178 | 26 proteosome regulatory subunit 4-like protein; Provisional |
1-28 | 2.63e-12 | ||
26 proteosome regulatory subunit 4-like protein; Provisional The actual alignment was detected with superfamily member PTZ00361: Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 57.47 E-value: 2.63e-12
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Name | Accession | Description | Interval | E-value | ||
PTZ00361 | PTZ00361 | 26 proteosome regulatory subunit 4-like protein; Provisional |
1-28 | 2.63e-12 | ||
26 proteosome regulatory subunit 4-like protein; Provisional Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 57.47 E-value: 2.63e-12
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RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1-28 | 1.49e-04 | ||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 35.37 E-value: 1.49e-04
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RecA-like_PAN_like | cd19502 | proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
13-28 | 2.37e-04 | ||
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 34.62 E-value: 2.37e-04
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Name | Accession | Description | Interval | E-value | ||
PTZ00361 | PTZ00361 | 26 proteosome regulatory subunit 4-like protein; Provisional |
1-28 | 2.63e-12 | ||
26 proteosome regulatory subunit 4-like protein; Provisional Pssm-ID: 185575 [Multi-domain] Cd Length: 438 Bit Score: 57.47 E-value: 2.63e-12
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PRK03992 | PRK03992 | proteasome-activating nucleotidase; Provisional |
1-28 | 1.17e-08 | ||
proteasome-activating nucleotidase; Provisional Pssm-ID: 179699 [Multi-domain] Cd Length: 389 Bit Score: 46.75 E-value: 1.17e-08
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PTZ00454 | PTZ00454 | 26S protease regulatory subunit 6B-like protein; Provisional |
1-28 | 2.14e-05 | ||
26S protease regulatory subunit 6B-like protein; Provisional Pssm-ID: 240423 [Multi-domain] Cd Length: 398 Bit Score: 37.82 E-value: 2.14e-05
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RPT1 | COG1222 | ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein ... |
1-28 | 1.49e-04 | ||
ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]; Pssm-ID: 440835 [Multi-domain] Cd Length: 326 Bit Score: 35.37 E-value: 1.49e-04
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RecA-like_PAN_like | cd19502 | proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily ... |
13-28 | 2.37e-04 | ||
proteasome activating nucleotidase PAN and related proteasome subunits; This subfamily contains ATPase subunits of the eukaryotic 26S proteasome, and of the archaeal proteasome which carry out ATP-dependent degradation of substrates of the ubiquitin-proteasome pathway. The eukaryotic 26S proteasome consists of a proteolytic 20S core particle (CP), and a 19S regulatory particle (RP) which provides the ATP-dependence and the specificity for ubiquitinated proteins. In the archaea the RP is a homohexameric complex of proteasome-activating nucleotidase (PAN). This subfamily also includes various eukaryotic 26S subunits including, proteasome 26S subunit, ATPase 2 (PSMC2, also known as S7 and MSS1) which is a member of the 19S RP and has a chaperone like activity; and proteasome 20S subunit alpha 6 (PSMA6, also known as IOTA, p27K, and PROS27) which is a member of the 20S CP. This RecA-like_PAN subfamily belongs to the RecA-like NTPase family which includes the NTP binding domain of F1 and V1 H(+)ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. The RecA-like NTPase family also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. Pssm-ID: 410910 [Multi-domain] Cd Length: 171 Bit Score: 34.62 E-value: 2.37e-04
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Blast search parameters | ||||
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