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Conserved domains on  [gi|2007851564|gb|QTC09763|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Cassiculus melanicterus]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 7.74e-162

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.74e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   1 ANLIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  81 DITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSIT 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 2007851564 321 IAILTTMSVMLLPVSPMILTTV 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 7.74e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.74e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   1 ANLIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  81 DITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSIT 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 2007851564 321 IAILTTMSVMLLPVSPMILTTV 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 1.12e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.04  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAWhTGQWDITQLTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  88 PMS------------CLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNP---T 148
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 149 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTL--LNFYL--YTVMTATVFLTLNTIK----- 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007851564 220 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.02e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  19 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  87 HPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIL----YNPKLTLLNFYLYTVMTATVFL-TLNTIKVLKLSTLMTA----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2007851564 232 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.86e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  89 ------------MSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPS----LNPTL 149
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 150 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLN--FYL--YTVMTATVFLTLNTIKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2007851564 223 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-342 7.74e-162

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 455.82  E-value: 7.74e-162
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   1 ANLIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  81 DITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAML 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSIT 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330       340
                  ....*....|....*....|..
gi 2007851564 321 IAILTTMSVMLLPVSPMILTTV 342
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMILTII 346
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-340 1.55e-138

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 396.87  E-value: 1.55e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   4 IFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDIT 83
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  84 QLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSlNPTLLTTLAILSTALGGW 163
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 164 MGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLLT 243
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRT-NKSTSITIA 322
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLpSTQLTLPLA 326

                         330
                  ....*....|....*...
gi 2007851564 323 ILTTMSVMLLPVSPMILT 340
Cdd:MTH00135  327 ISTTATLMLLPLTPAILA 344
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-340 4.53e-132

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 380.42  E-value: 4.53e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   4 IFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDIT 83
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  84 QLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALGGW 163
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 164 MGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLLT 243
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSITIAI 323
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*..
gi 2007851564 324 LTTMSVMLLPVSPMILT 340
Cdd:MTH00070  328 TIILSLMLLPITPTILN 344
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 3-340 1.59e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 343.37  E-value: 1.59e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   3 LIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDI 82
Cdd:MTH00105    7 IIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  83 TQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALGG 162
Cdd:MTH00105   87 TKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 163 WMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00105  167 WGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TNKSTSIT 320
Cdd:MTH00105  247 TLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTL 325

                         330       340
                  ....*....|....*....|
gi 2007851564 321 IAILTTMSVMLLPVSPMILT 340
Cdd:MTH00105  326 LPTLIILSTMLLPLTPMLSI 345
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-340 4.01e-98

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 293.80  E-value: 4.01e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   3 LIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDI 82
Cdd:MTH00200    7 PLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  83 TQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALGG 162
Cdd:MTH00200   87 SEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 163 WMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00200  167 WGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSITIA 322
Cdd:MTH00200  247 TLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVG 326

                         330
                  ....*....|....*...
gi 2007851564 323 ILTTMSVMLLPVSPMILT 340
Cdd:MTH00200  327 LLLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-332 2.02e-79

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 246.38  E-value: 2.02e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   3 LIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDI 82
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  83 TQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALGG 162
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 163 WMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSITIA 322
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                         330
                  ....*....|
gi 2007851564 323 ILTTMSVMLL 332
Cdd:MTH00041  327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-339 2.33e-56

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 186.18  E-value: 2.33e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   2 NLIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWhtgqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  82 ITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTspsLNPTLLTTLAILSTALG 161
Cdd:MTH00160   81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 162 GWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLL 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 242 LTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKSTSITI 321
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNKFSLILN 316

                         330
                  ....*....|....*...
gi 2007851564 322 aILTTMSVMLLPVSPMIL 339
Cdd:MTH00160  317 -FLSFISLFGLILSSLLF 333
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-298 8.54e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.81  E-value: 8.54e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   1 ANLIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW 80
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  81 DITqlthpmscLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNP-TLLTTLAILSTA 159
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 160 LGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTiKVLKLSTLMTAWTKIPSLNAM 239
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2007851564 240 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 298
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-327 5.83e-43

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 151.47  E-value: 5.83e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   3 LIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSmtnawhTGQWDI 82
Cdd:MTH00011    9 FLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSF 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  83 TQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSTALGG 162
Cdd:MTH00011   83 PSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGG 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 163 WMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTLMTAWTKIPSLNAMLLL 242
Cdd:MTH00011  163 LGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFI 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNhMKQWRTNKSTSITIA 322
Cdd:MTH00011  243 MLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS-LKSAPYEPKTKILIS 320


                  ....*
gi 2007851564 323 ILTTM 327
Cdd:MTH00011  321 MCTLS 325
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-298 1.17e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 137.11  E-value: 1.17e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   4 IFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTgqwdit 83
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  84 qLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLymTSPSLNPTLLTTLAILSTALGGW 163
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 164 MGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLKLSTlMTAWTKIPSLNAMLLLT 243
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2007851564 244 LLSLAG-LPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAYCTTI 298
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI 287
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-294 1.12e-24

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.04  E-value: 1.12e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLF-SSMTNAWhTGQWDITQLTH 87
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  88 PMS------------CLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNP---T 148
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 149 LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTL--LNFYL--YTVMTATVFLTLNTIK----- 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007851564 220 VLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-263 1.19e-24

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 102.80  E-value: 1.19e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASALVLFS-------------SMTNA 74
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  75 WHTGQWDITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNptLLTTLA 154
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 155 ILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNP----KLTLLNFYLYTVMTATVFLTLNTIKVLK--LSTLMT 228
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSfesiQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2007851564 229 AWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 3.02e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.08  E-value: 3.02e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  19 SNHWIMAWAGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  87 HPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSTAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIIIL----YNPKLTLLNFYLYTVMTATVFL-TLNTIKVLKLSTLMTA----WT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGagtiYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2007851564 232 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 9-263 9.62e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.47  E-value: 9.62e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDI----T 83
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  84 QLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTtlAILSTALGGW 163
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 164 MGLNQTQIRKILAFSSISHLGW----MAIIILYNPKLTLLNFYLYTVMTATVFLTLNTIKVLK--LSTLMTAWTKIPSLN 237
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                         250       260
                  ....*....|....*....|....*.
gi 2007851564 238 AMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-293 1.86e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 94.63  E-value: 1.86e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  89 ------------MSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPS----LNPTL 149
Cdd:TIGR01770 192 lsngmlnislllLGIVLILVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 150 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLN--FYL--YTVMTATVFLTLNTIKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2007851564 223 ---LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLA 293
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-292 3.19e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 94.12  E-value: 3.19e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  10 LLGTTITISSNHWIMAWAGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQL--- 85
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIaka 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  86 ----THPMSCLIF-----TSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNPT---L 149
Cdd:PRK05777  193 ladgSGNSLLLLFglvflLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 150 LTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM--AIIILYNPKLTLLNFYL--YTVMTATVFLTLNTIK-----V 220
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLlvGLAAGTAEGYSAVLFYLlaYLFMTLGAFGVISLLRrkggeA 352

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2007851564 221 LKLSTL-MTAWTKiPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRL 292
Cdd:PRK05777  353 ESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-263 1.93e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.21  E-value: 1.93e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  11 LGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQATASALVLFSSMTNAWHTGQ-- 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  80 ------------WDITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLymTSPSLNP 147
Cdd:MTH00198  279 mlgtilsatletTNIELRQGSLGYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 148 TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTVM-------TATVFLTL----- 215
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaSFTVICTLeefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007851564 216 -------------NTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-275 5.03e-14

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 72.49  E-value: 5.03e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTHP 88
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAR 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  89 MS----------CLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPP------ITLLYMTSPSLNP-TLL 150
Cdd:COG0651   196 LAeldpglllaaFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 151 TTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLY----TVMTATVFLTLNTIKVL----K 222
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2007851564 223 LSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAA 275
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-204 2.34e-12

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 67.72  E-value: 2.34e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   3 LIFAISLLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHP-RAIEAATKYFLTQATASALVL--FSSM--TNAWHT 77
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  78 GQWDI------TQLTHPMSCLI----FTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL----LYMTSP 143
Cdd:CHL00049  194 ELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPFY 273

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007851564 144 SLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIIL-------YNPKLTLLNFYLY 204
Cdd:CHL00049  274 FSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIF 344
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-188 9.05e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 65.84  E-value: 9.05e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  46 PRAIEAATKYFLTQATASALVLF-SSMTNAWHTGQWDITQLTHPMS---------CLIFTSA-IAMKLGLVPFHFWFPEV 114
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGSTQLSAIALALItspslglalALVFVIAgIAFKISAVPFHQWTPDV 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 115 LQGSPLTTGLLLSTIMKLP----PITLLYMTSPSLNP---TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMA 187
Cdd:PRK02504  237 YEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAGFVM 316


                  .
gi 2007851564 188 I 188
Cdd:PRK02504  317 I 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-188 1.42e-10

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.02  E-value: 1.42e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  45 HPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQW--DITQLTH-----PMSCLIFTS---AIAMKLGLVPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 115 LQGSPLTTGLLLSTIM-KLP-------PITLLYMTSPSLNPTLLTtLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 2007851564 187 AI 188
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 4.08e-10

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 60.88  E-value: 4.08e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  29 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQATASALVLFS---------SMTNAWHTGQWDITQLTHPMSCL-IFTSA 97
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  98 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTIMKLPPI--TLLYMTSPSLNPT----LLTTLAILSTALGGWMGLNQT 169
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 170 QIRKILAFSSISHLGWM------AIIILYNPKLT----------LLNFYLYTVMTATVFLT-------LNTIKVLKLSTL 226
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2007851564 227 MTawtKIPSLNAMLLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376  390 AR---TMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-190 4.60e-08

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 54.18  E-value: 4.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  46 PRAIEAATKYFLTQATASALVLFSSMTNAW-HTGQWDITQL-THPMSC-------LIFTSAIAMKLGLVPFHFWFPEV-- 114
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFlGGGTFDLLELlNLPLPFgvqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 115 ---LQGSPLTTGLLLST--------IMKLPPITLLYMTspslnpTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHL 183
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygflrfNLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305


                  ....*..
gi 2007851564 184 GWMAIII 190
Cdd:TIGR01972 306 GFVLLGI 312
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 287-336 9.10e-08

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 48.02  E-value: 9.10e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2007851564 287 FFYLRLAYCTTITLPPHTTNHMKQWRTNKSTSIT-IAILTTMSVMLLPVSP 336
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-190 5.47e-07

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 50.91  E-value: 5.47e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   9 LLLGTTITISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATA------SALVLFSSMTNAWHTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  83 TQLTHP----------MSCLIFTSAIAMKLGLVPFHFWFPEVLQGSP-LTTGLLLSTIMKLPPITLLYMTS-------PS 144
Cdd:PRK08676  191 TELAAHasllspsvlgASFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2007851564 145 LNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-190 2.87e-06

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 48.66  E-value: 2.87e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  46 PRAIEAATKYFLTQATASALVLFSSMTNAWH----TGQWDITQL-THPMSC-------LIFTSAIAMKLGLVPFHFWFPE 113
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLlNLPLPPgvqywlfLAFFIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 114 VLQGSPLTTGLLLSTIM-KLPPITLLYMTSPsLNP-------TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGW 185
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                  ....*
gi 2007851564 186 MAIII 190
Cdd:PRK05846  316 VTLGI 320
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 4-188 3.23e-06

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 48.77  E-value: 3.23e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564   4 IFAISLLLgttiTISSNHWIMAWAGLEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFSSM---TNAWhtgqw 80
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA----- 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  81 diTQLTHPMSCLIFTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLST-IMKL 132
Cdd:PRK06458  187 --TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVaLYAV 264

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2007851564 133 PPITLLYMTSPSLNP--TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAI 188
Cdd:PRK06458  265 LRYYILIDAAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 19-186 6.58e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 47.84  E-value: 6.58e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  19 SNHWIMAWAGLEINTLAILPLISKSHH-PRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTH---------- 87
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLNFSELLAaaptilsspl 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  88 --PMSCLIFTSAIAmKLGLVPFHFWFPEVLQG-SPLTTgLLLSTIMKLPPITLLYMTSP--SLNPTLLTTLAI--LSTAL 160
Cdd:COG1009   210 ltLILLLLLLGAFG-KSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSPVWLTVVAIigAITAL 287

                         170       180
                  ....*....|....*....|....*..
gi 2007851564 161 -GGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:COG1009   288 fAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-190 1.10e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 47.23  E-value: 1.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  92 LIFTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL------YMTSPSLNPTLLtTLAILSTALGGWMG 165
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVL-VLGLATMLLGGWRA 285

                          90       100
                  ....*....|....*....|....*
gi 2007851564 166 LNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLV 310
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-294 5.37e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 44.87  E-value: 5.37e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  29 LEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFS-SMTNAwHTGQWDITQLTH--PMSCLIFT------SAIA 99
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTafgfvlLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 100 MKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLY-----------MTSPSLNpTLLTTLAILSTALGGWMGLNQ 168
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 169 TQIRKILAFSSISHLGWMAIIILYNPKLTLLN--FYL--YTVMTATVFLTLNTIKVL----KLSTLMTAWTKIPSLNAML 240
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2007851564 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPAATLISLLSLLSLFFYLRLAY 294
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-271 8.62e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 44.22  E-value: 8.62e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  30 EINTLAILPLISKSHHpRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDIT-------QLTHPMSCLIFT----SAI 98
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIVFlfllAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  99 AMKLGLVPFHFWFPE-----------VLQGSPLTTG-----LLLSTIM--KLPPITLLYMTSPSLNpTLLTTLAILSTAL 160
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGW--MAIIILYNPKLT--LLNFYLYTVMTATVFLTLNTI----KVLKLSTLMTAWTK 232
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYilVGLGLGTSLGFAggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2007851564 233 IPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
88-264 8.76e-05

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 44.17  E-value: 8.76e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  88 PMSCLIFTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTIMKLPPI-------TLLYMTSPSLNPTLLTTLAILSTAL 160
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWM-AIIILYNPK-LTLLNFYLY---TVMTAtVFLTLNTIKVL----KLSTLMTAWT 231
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYR 364

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2007851564 232 KIPSLNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK12663  365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-186 3.77e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 41.99  E-value: 3.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  51 AATKYFLTQATASALVLFSSMTNAWHTG--QWDITQL---THPMSCLIFTSA-----IAMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGasSFDYEPLrshTLPLSTQLLLLApilvgFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2007851564 120 LTTGLLLSTIMKLPPITLL------YMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 4.76e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 41.64  E-value: 4.76e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  29 LEINTLAILPLISKSHHPRAIEAATKYFLTQATASALVLFS-----SMTNAWHTGqwDITQLTHPM--------SCLIFT 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDLptnraiqiGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  96 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL------------LYMTSPSLNpTLLTTLAILSTALGGW 163
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 164 MGLNQTQIRKILAFSSISHLGWMAIIILYNPKLTLLNFYLYTV----MTATVFLTLNTIK----VLKLSTLMTAWTKIPS 235
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVnhsiVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2007851564 236 LNAMLLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
48-186 5.84e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 5.84e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  48 AIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTHPMSCLIFTSAIAMKLGLV----------------PFHFWF 111
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 112 PEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP--SLNPTLLTTLAILSTA---LGGWMGLNQTQIRKILAFSSISHLGWM 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWTGAItafLGASIALTQNDIKKGLAYSTISQLGYM 330
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 51-190 6.20e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 41.56  E-value: 6.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  51 AATKYFLTQATASALVLFSSMTNAWHTGQ--WDITQLTH---PMSCLI-----FTSAIAMKLGLVPFHFWFPE------- 113
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELllyagFLIAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 114 ----VLQGSPLTTG--LLLSTIMKLPPITLLYMtSPslnptLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMA 187
Cdd:PRK12561  218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                  ...
gi 2007851564 188 III 190
Cdd:PRK12561  292 LGI 294
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 105-262 6.65e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 41.44  E-value: 6.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 105 VPFHFWFPEVLQG-SPLTTGLLLSTIMKLPpITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFS 178
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 179 SISHLGWMAIIILYNPKLTLLNFYLYTVM----TATVFLTLNTIK-------VLKLSTLmtaWTKIPSLNAMLLLTLLSL 247
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFLVAhslyKGALFMVAGIIDhetgtrdITKLGGL---RRAMPITAAAALLAALSM 367

                         170
                  ....*....|....*
gi 2007851564 248 AGLPPLTGFLPKWLI 262
Cdd:PRK12647  368 AGLPPLFGFLAKELI 382
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 51-184 8.47e-04

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 41.25  E-value: 8.47e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  51 AATKYFLTQATASALVLFSSMTNAWHTGQWDITQL--THPMSCLIFTSA---IAMKLGLVPFHFWFPEVLQGSPLTTGLL 125
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLgaSAGILSLVFLLLflgFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2007851564 126 LSTIM-KLPPITLLYMTSPSLNP-----TLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLG 184
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 101-264 9.58e-04

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 41.10  E-value: 9.58e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 101 KLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAI-----LSTALGGWMGLNQTQIRKIL 175
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 176 AFSSISHLGWMAIIILY--NPKLTLLNFYLYTVMTATVFLTLNTI---------KVLKLSTLMTAwtkIPSLNAMLLLTL 244
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|
gi 2007851564 245 LSLAGLPPLTGFLPKWLIIQ 264
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLILE 414
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-191 1.22e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 40.68  E-value: 1.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  97 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSP-------SLNPTLLtTLAILSTALGGWMGLNQ 168
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|...
gi 2007851564 169 TQIRKILAFSSISHLGWMAIIIL 191
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK12650 PRK12650
DUF4040 family protein;
94-190 1.40e-03

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 40.41  E-value: 1.40e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  94 FTSAIAM--------KLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSL--NPT---LLTTLAILSTAL 160
Cdd:PRK12650  206 LTTVVAVliavaaftKSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwLLIIVGMITALM 285

                          90       100       110
                  ....*....|....*....|....*....|
gi 2007851564 161 GGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:PRK12650  286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-259 2.02e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 40.20  E-value: 2.02e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  44 HHPRAIEAATKYFLTQATASALVLFSSMTNAWHTGQWDITQLTHPMS---------------CLIFTSAiAMKLGLVPFH 108
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 109 FWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT-----LLTTLAILSTALGGWMGLNQTQIRKILAFSSISHL 183
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 184 GWMAIIILYNPK------LTLLNFYL--YTVMTATVFLTLN-------TIKVLKLSTLMTawtKIPSLNAMLLLTLLSLA 248
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                         250
                  ....*....|.
gi 2007851564 249 GLPPLTGFLPK 259
Cdd:PRK12649  392 GIPPLNGFLSK 402
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-264 3.22e-03

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 39.31  E-value: 3.22e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  51 AATKYFLTQATASALVLFSSMTNAWHTGQWD------ITQLTHPMSCLIFTSAI----AMKLGLVPFHFWFPEV-LQGSP 119
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQNLSLNTQLILLTGLllgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 120 LTTGLLLSTIMKLPPITL------LYMTSPSLNPTLLTTLAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIIILYN 193
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564 194 PKLTLLN---------------FYLYTVMTATVfltlNTIKVLKLSTLMTAWTKIPSLNAMLLLTLLSLAGLPPLTGFLP 258
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 2007851564 259 KWLIIQ 264
Cdd:PRK07363  394 EFIVFQ 399
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 64-190 5.28e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.74  E-value: 5.28e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  64 ALVLFSSMTNAWHTGQWDITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP 143
Cdd:MTH00066  183 SMAWLAMNTNSWELQQIFLLNDNSTLPLLGLILAAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIRFHP 262

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2007851564 144 SL--NPTLLTT---LAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII 190
Cdd:MTH00066  263 LLenNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTI 314
ND5 MTH00211
NADH dehydrogenase subunit 5; Provisional
 64-199 7.46e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214459 [Multi-domain]  Cd Length: 597  Bit Score: 38.01  E-value: 7.46e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  64 ALVLFSSMTNAWHTGQWDITQLTHPMSCLIFTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP 143
Cdd:MTH00211  180 SMVWLLLNLNSWEISQLFILNLDLTLFLLGLLLAAMGKSAQFGFHPWLPSAMEGPTPVSALLHSSTMVVAGVFLLIRLSP 259

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2007851564 144 --SLNPTLLTT---LAILSTALGGWMGLNQTQIRKILAFSSISHLGWMAIII-LYNPKLTLL 199
Cdd:MTH00211  260 lfQNNQLILGAvllLGALTMLFGALCALTQNDIKKIVAFSTTSQLGLMMVTLgLNQPQLAFL 321
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 97-184 7.77e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.12  E-value: 7.77e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007851564  97 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSPSL-------NPtLLTTLAILSTALGGWMGLNQ 168
Cdd:MTH00204  218 SLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQ 296

                          90
                  ....*....|....*.
gi 2007851564 169 TQIRKILAFSSISHLG 184
Cdd:MTH00204  297 VDFKRLIAYSSVAHMG 312
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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