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Conserved domains on  [gi|2007885605|gb|QTC10184|]
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cytochrome b, partial (mitochondrion) [Notiosorex evotis]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 6-267 0e+00

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 543.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPH 267
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 6-267 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 543.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPH 267
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.64e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 287.34  E-value: 7.64e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   9 PLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  89 MLFICLFLHVGRGLYYGSY--LFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2007885605 167 GFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-267 4.09e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 289.77  E-value: 4.09e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  16 NSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLF 95
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  96 LHVGRGLYYGSY-----LfieTWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSV 170
Cdd:COG1290   105 LHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 171 DKATLTRFFAFH-FILPFIIAALAGVHLLFLHETGSNNPSGI----SSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:COG1290   182 GDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDllGDPDNYTPANPLNTPPH 267
Cdd:COG1290   262 FPI--NPPPNYGPANPLATPAH 281
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.49e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 4.49e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  18 FIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  98 VGRGLYYG--SYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2007885605 176 TRFFAFHFILPFIIAALAGVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 6-267 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 543.08  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00100    6 KTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00100   86 GASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPH 267
CYTB MTH00119
cytochrome b; Provisional
 6-267 2.55e-173

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 482.86  E-value: 2.55e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00119    7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00119   87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPH 268
CYTB MTH00131
cytochrome b; Provisional
 6-267 7.57e-173

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 481.84  E-value: 7.57e-173
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPH 267
CYTB MTH00074
cytochrome b; Provisional
 6-267 2.23e-170

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 475.32  E-value: 2.23e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPH 268
CYTB MTH00191
cytochrome b; Provisional
 5-267 6.70e-168

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 468.63  E-value: 6.70e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   5 WKTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHA 84
Cdd:MTH00191    2 RKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHA 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  85 NGASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWI 164
Cdd:MTH00191   82 NGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWL 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 165 WGGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVL 244
Cdd:MTH00191  162 WGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVL 241

                         250       260
                  ....*....|....*....|...
gi 2007885605 245 FSPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00191  242 FSPNLLGDPENFIPANPLVTPVH 264
CYTB MTH00156
cytochrome b; Provisional
 11-267 9.54e-168

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 467.72  E-value: 9.54e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  11 MKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASML 90
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  91 FICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSV 170
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 171 DKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLFSPDLL 250
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250
                  ....*....|....*..
gi 2007885605 251 GDPDNYTPANPLNTPPH 267
Cdd:MTH00156  241 GDPENFIPANPLVTPVH 257
CYTB MTH00145
cytochrome b; Provisional
 1-267 3.85e-156

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 439.34  E-value: 3.85e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   1 MMKNWKTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIR 80
Cdd:MTH00145    2 LSPLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLR 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  81 YLHANGASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDL 160
Cdd:MTH00145   82 SLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKML 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 161 VQWIWGGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLA 240
Cdd:MTH00145  162 VEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLV 241

                         250       260
                  ....*....|....*....|....*..
gi 2007885605 241 SLVLFSPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00145  242 FLVLFFPNLLGDPENFIPANPMVTPVH 268
CYTB MTH00034
cytochrome b; Validated
 6-267 1.58e-152

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 430.28  E-value: 1.58e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00034    6 KSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00034   86 GASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00034  166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00034  246 FPTALNDPENFIPANPLVTPPH 267
CYTB MTH00016
cytochrome b; Validated
 1-267 1.54e-150

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 425.25  E-value: 1.54e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   1 MMKNW-KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLI 79
Cdd:MTH00016    1 MFSPMrKTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  80 RYLHANGASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSD 159
Cdd:MTH00016   81 RNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKM 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 160 LVQWIWGGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTL 239
Cdd:MTH00016  161 LVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLL 240

                         250       260
                  ....*....|....*....|....*...
gi 2007885605 240 ASLVLFSPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00016  241 LSVVLLWPNILGDPENFIPANPLVTPTH 268
CYTB MTH00224
cytochrome b; Provisional
 7-267 2.41e-129

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 371.56  E-value: 2.41e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   7 TQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANG 86
Cdd:MTH00224    8 THPAIKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  87 ASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWG 166
Cdd:MTH00224   88 ASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 167 GFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLFS 246
Cdd:MTH00224  168 GFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFE 247

                         250       260
                  ....*....|....*....|.
gi 2007885605 247 PDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00224  248 PNLFTDPENFLMANPLVTPIH 268
CYTB MTH00022
cytochrome b; Validated
 2-267 1.92e-127

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 366.72  E-value: 1.92e-127
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   2 MKNWKTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRY 81
Cdd:MTH00022    1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  82 LHANGASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLV 161
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 162 QWIWGGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLAS 241
Cdd:MTH00022  161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                         250       260
                  ....*....|....*....|....*.
gi 2007885605 242 LVLFSPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00022  241 IVYFAPNLLGDPENFIQANSLVTPVH 266
CYTB MTH00053
cytochrome b; Provisional
 6-267 8.28e-126

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 362.49  E-value: 8.28e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   6 KTQPLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHAN 85
Cdd:MTH00053    7 KENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  86 GASMLFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:MTH00053   87 GASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:MTH00053  167 GGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFL 246

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDLLGDPDNYTPANPLNTPPH 267
Cdd:MTH00053  247 FPYSLGDAENFKQANPLVTPVH 268
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 9-206 7.64e-99

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 287.34  E-value: 7.64e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605   9 PLMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGAS 88
Cdd:cd00284     1 PKLIEVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGAS 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  89 MLFICLFLHVGRGLYYGSY--LFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWG 166
Cdd:cd00284    81 MFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWG 160

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2007885605 167 GFSVDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSN 206
Cdd:cd00284   161 GFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
16-267 4.09e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 289.77  E-value: 4.09e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  16 NSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLF 95
Cdd:COG1290    25 REHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVY 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  96 LHVGRGLYYGSY-----LfieTWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSV 170
Cdd:COG1290   105 LHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFP 181

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 171 DKATLTRFFAFH-FILPFIIAALAGVHLLFLHETGSNNPSGI----SSDADKIPFHPYYTIKDILGILLLILTLASLVLF 245
Cdd:COG1290   182 GDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFF 261

                         250       260
                  ....*....|....*....|..
gi 2007885605 246 SPDllGDPDNYTPANPLNTPPH 267
Cdd:COG1290   262 FPI--NPPPNYGPANPLATPAH 281
CYTB MTH00033
cytochrome b; Provisional
 16-267 7.79e-94

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 281.44  E-value: 7.79e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  16 NSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLF 95
Cdd:MTH00033   13 NDIIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVY 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  96 LHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATL 175
Cdd:MTH00033   93 CHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTL 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 176 TRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLFS--PDLLGDP 253
Cdd:MTH00033  173 NRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDP 252

                         250
                  ....*....|....
gi 2007885605 254 DNYTPANPLNTPPH 267
Cdd:MTH00033  253 ENFIQANPLVTPVH 266
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-204 4.49e-90

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 264.63  E-value: 4.49e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  18 FIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLFLH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  98 VGRGLYYG--SYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2007885605 176 TRFFAFHFILPFIIAALAGVHLLFLHETG 204
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00086
cytochrome b; Provisional
 12-267 4.74e-87

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 262.95  E-value: 4.74e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  12 KIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLF 91
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  92 ICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVD 171
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 172 KATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYtIKDILGILLLILTLASLVLFSPDLLG 251
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEY-WNKDAYNIIFWLVFIIFSLFYPFNLG 239

                         250
                  ....*....|....*.
gi 2007885605 252 DPDNYTPANPLNTPPH 267
Cdd:MTH00086  240 DPEMFIEADPMMSPVH 255
CYTB MTH00046
cytochrome b; Validated
 10-265 2.99e-69

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 217.54  E-value: 2.99e-69
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  10 LMKIINNSFIDLPTPSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASM 89
Cdd:MTH00046    1 MISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNV 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  90 LFICLFLHVGRGLYYGSYLFIETWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFS 169
Cdd:MTH00046   81 LFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 170 VDKATLTRFFAFHFILPFIIAALAGVHLLFLHETGSNNPSGISSD-ADKIPFHPYYTIKDILGILLLILTLASLVLFSPD 248
Cdd:MTH00046  161 VTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGySDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPD 240

                         250
                  ....*....|....*..
gi 2007885605 249 LLGDPDNYTPANPLNTP 265
Cdd:MTH00046  241 LVLDIEAYLEADPLVTP 257
PRK03735 PRK03735
cytochrome b6; Provisional
 33-208 8.41e-44

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 147.94  E-value: 8.41e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  33 FGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLFLHVGRGLYYGSYLFIE- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 112 -TWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFAFH-FILPFII 189
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWAL 203

                         170
                  ....*....|....*....
gi 2007885605 190 AALAGVHLLFLHETGSNNP 208
Cdd:PRK03735  204 AVLMLAHFLMIRKQGISGP 222
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-253 2.81e-42

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 142.38  E-value: 2.81e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  88 SMLFICLFLHVGRGLYYGSYLFIE--TWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 166 GGFSVDKATLTRFFAFHF-ILPFIIAALAGVHLLFLHETGSNNPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2007885605 245 FSPDLLGDP 253
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 24-209 1.13e-35

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 126.76  E-value: 1.13e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605  24 PSNISSWWNFGSLLGICLIIQILTGLFLAMHYTSDTLTAFSSVTHICRDVNYGWLIRYLHANGASMLFICLFLHVGRGLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2007885605 104 YGSYLFIE--TWNIGVLLLFAVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGSDLVQWIWGGFSVDKATLTRFFAF 181
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSL 186

                         170       180
                  ....*....|....*....|....*....
gi 2007885605 182 H-FILPFIIAALAGVHLLFLHETGSNNPS 209
Cdd:CHL00070  187 HtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-267 1.48e-10

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 58.04  E-value: 1.48e-10
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2007885605 207 NPSGISSDADKIPFHPYYTIKDILGILLLILTLASLVLFSPDLLGDPDNYTPANPLNTPPH 267
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLH 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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