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Conserved domains on  [gi|2027999310|gb|QTZ23266|]
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zinc finger protein 503, partial [Micropterus chattahoochae]

Protein Classification

nlz1 domain-containing protein( domain architecture ID 10574975)

nlz1 domain-containing protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
nlz1 super family cl13791
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.87e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


The actual alignment was detected with superfamily member pfam12402:

Pssm-ID: 403564  Cd Length: 58  Bit Score: 58.85  E-value: 1.87e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999310 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Name Accession Description Interval E-value
nlz1 pfam12402
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.87e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


Pssm-ID: 403564  Cd Length: 58  Bit Score: 58.85  E-value: 1.87e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999310 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Name Accession Description Interval E-value
nlz1 pfam12402
NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically ...
 161-208 1.87e-11

NocA-like zinc-finger protein 1; This domain family is found in eukaryotes, and is typically between 42 and 57 amino acids in length. There is a conserved GAY sequence motif. There is a single completely conserved residue G that may be functionally important. Nlz1 self-associated via its C terminus, interacted with Nlz2, and bound to histone deacetylases.


Pssm-ID: 403564  Cd Length: 58  Bit Score: 58.85  E-value: 1.87e-11
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2027999310 161 AGMTYPGSLAGAYAGYPQHFLPHG--------GSLVNAQLASSLGCS--KAGSSPLAG 208
Cdd:pfam12402   1 AGISYPGSLAGAYAGYPPQFLPHGvgldptkpSSLVGAQLAATLGCSgkPAGSSPLTG 58
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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