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Conserved domains on  [gi|2037089942|gb|QVG59966|]
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RNA polymerase II largest subunit, partial [Passalora sp.]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
Ricin_B_lectin super family cl47023
Ricin-type beta-trefoil lectin domain;
1-266 4.59e-73

Ricin-type beta-trefoil lectin domain;


The actual alignment was detected with superfamily member PRK08565:

Pssm-ID: 481363 [Multi-domain]  Cd Length: 1103  Bit Score: 241.40  E-value: 4.59e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKSTKVFLNGTWVGVHKNAG 80
Cdd:PRK08565   438 HGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHPDGE 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   81 QLTEMMRNLRRKGVLSFEVTI--IRDVREREIKIFTDAGRVCRPLFVVEndpkspnNGNLVLQREHCQKLaddqniladl 158
Cdd:PRK08565   518 ELAEKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVE-------NGKPKLTREHVEKL---------- 580

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  159 vgvteeeRETLIfGWKGLVDKGVVEYLDAEEEETAMIIMTPEDL-EEHklmrqgvpmedtradphrrikskpnphvrtwT 237
Cdd:PRK08565   581 -------KKGEL-TFDDLVKMGVIEYLDAEEEENAYVALDPEDLtPEH-------------------------------T 621

                          250       260
                   ....*....|....*....|....*....
gi 2037089942  238 HCEIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:PRK08565   622 HLEIWPPAILGITASIIPYPEHNQSPRNT 650
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 1-266 4.59e-73

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 241.40  E-value: 4.59e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKSTKVFLNGTWVGVHKNAG 80
Cdd:PRK08565   438 HGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHPDGE 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   81 QLTEMMRNLRRKGVLSFEVTI--IRDVREREIKIFTDAGRVCRPLFVVEndpkspnNGNLVLQREHCQKLaddqniladl 158
Cdd:PRK08565   518 ELAEKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVE-------NGKPKLTREHVEKL---------- 580

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  159 vgvteeeRETLIfGWKGLVDKGVVEYLDAEEEETAMIIMTPEDL-EEHklmrqgvpmedtradphrrikskpnphvrtwT 237
Cdd:PRK08565   581 -------KKGEL-TFDDLVKMGVIEYLDAEEEENAYVALDPEDLtPEH-------------------------------T 621

                          250       260
                   ....*....|....*....|....*....
gi 2037089942  238 HCEIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:PRK08565   622 HLEIWPPAILGITASIIPYPEHNQSPRNT 650
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 66-127 4.41e-32

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 112.46  E-value: 4.41e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2037089942  66 VFLNGTWVGVHKNAGQLTEMMRNLRRKGVLSFEVTIIRDVREREIKIFTDAGRVCRPLFVVE 127
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-266 2.10e-21

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 93.40  E-value: 2.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTvgtpaeplidfmrqrgmdlleeydpvlnpkstkvflngtwvgvhknag 80
Cdd:cd00653   350 HPSHWGRICPIETPEGENCGLVKNLALMARIS------------------------------------------------ 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  81 qltemmrnlrrkgvlsfevtiirdvrereikiftdaGRVCRPLFVVENDpkspnngnlvlqrehcqkladdqniladlvg 160
Cdd:cd00653   382 ------------------------------------GRIERPYRIVEKE------------------------------- 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942 161 vteeeretlifgwkglvdkgvveyldaeeeetamiimtpedleehklmrqgvpmedtradphrrikskpnphvrtWTHCE 240
Cdd:cd00653   395 ---------------------------------------------------------------------------VTHIE 399

                         250       260
                  ....*....|....*....|....*.
gi 2037089942 241 IHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:cd00653   400 ISPSQILSVAASLIPFPEHNQSPRNL 425
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-266 1.37e-19

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 87.86  E-value: 1.37e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTvgtpaeplidfmrqrgmdlleEYdpvlnpkstkvflngtwvgvhknag 80
Cdd:COG0085    411 HPSHYGRMCPIETPEGPNIGLIGSLALYARVN---------------------EY------------------------- 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   81 qltemmrnlrrkgvlsfevtiirdvrereikiftdaGRVCRPLFVVENdpkspnngnlvlqrehcqkladdqniladlvG 160
Cdd:COG0085    445 ------------------------------------GFIETPYRKVEN-------------------------------G 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  161 -VTEEeretlifgwkglvdkgvVEYLDAEEEETAMIIMTPEDLEEHklmrqGVPMEDTraDPHRRIKSKPNPHVRTWTHC 239
Cdd:COG0085    458 kVTDE-----------------IEYLTADEEENYYIAQANAPLDED-----GNFLEER--VLVRYRGEEVLVPPEEVDYM 513

                          250       260
                   ....*....|....*....|....*..
gi 2037089942  240 EIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:COG0085    514 DVSPKQIVSVATSLIPFLEHDDANRAL 540
 
Name Accession Description Interval E-value
PRK08565 PRK08565
DNA-directed RNA polymerase subunit B; Provisional
 1-266 4.59e-73

DNA-directed RNA polymerase subunit B; Provisional


Pssm-ID: 236291 [Multi-domain]  Cd Length: 1103  Bit Score: 241.40  E-value: 4.59e-73
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRGMDLLEEYDPVLNPKSTKVFLNGTWVGVHKNAG 80
Cdd:PRK08565   438 HGTQWGRICPFETPEGPNCGLVKNLALMAQISVGVDEEEVEEILYELGVVPVEEAREEEYISWSRVYLNGRLIGYHPDGE 517

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   81 QLTEMMRNLRRKGVLSFEVTI--IRDVREREIKIFTDAGRVCRPLFVVEndpkspnNGNLVLQREHCQKLaddqniladl 158
Cdd:PRK08565   518 ELAEKIRELRRSGKISDEVNVayIETGEINEVYVNCDSGRVRRPLIVVE-------NGKPKLTREHVEKL---------- 580

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  159 vgvteeeRETLIfGWKGLVDKGVVEYLDAEEEETAMIIMTPEDL-EEHklmrqgvpmedtradphrrikskpnphvrtwT 237
Cdd:PRK08565   581 -------KKGEL-TFDDLVKMGVIEYLDAEEEENAYVALDPEDLtPEH-------------------------------T 621

                          250       260
                   ....*....|....*....|....*....
gi 2037089942  238 HCEIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:PRK08565   622 HLEIWPPAILGITASIIPYPEHNQSPRNT 650
PRK07225 PRK07225
DNA-directed RNA polymerase subunit B'; Validated
 62-266 8.52e-47

DNA-directed RNA polymerase subunit B'; Validated


Pssm-ID: 235972 [Multi-domain]  Cd Length: 605  Bit Score: 164.36  E-value: 8.52e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  62 KSTKVFLNGTWVGVHKNAGQLTEMMRNLRRKGVLSFEVTIIRDVREREIKIFTDAGRVCRPLFVVEndpkspnNGNLVLQ 141
Cdd:PRK07225    3 RKAKVYVNGKLIGTHDDPEELVEEIREARRSGEISEEVNVSYKEETNEVIINTDAGRARRPLIVVE-------NGEPLLT 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942 142 REHCQKLADDQniladlvgvteeeretliFGWKGLVDKGVVEYLDAEEEETAMIIMTPEDL-EEHklmrqgvpmedtrad 220
Cdd:PRK07225   76 EEHIEKLKNGE------------------LTFDDLVKQGVIEYLDAEEEENAYIAVYEEDLtEEH--------------- 122

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2037089942 221 phrrikskpnphvrtwTHCEIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:PRK07225  123 ----------------THLEIDPSLILGIGAGMIPYPEHNASPRIT 152
RNA_pol_Rpb2_4 pfam04566
RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of ...
 66-127 4.41e-32

RNA polymerase Rpb2, domain 4; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 4, is also known as the external 2 domain.


Pssm-ID: 428012 [Multi-domain]  Cd Length: 62  Bit Score: 112.46  E-value: 4.41e-32
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2037089942  66 VFLNGTWVGVHKNAGQLTEMMRNLRRKGVLSFEVTIIRDVREREIKIFTDAGRVCRPLFVVE 127
Cdd:pfam04566   1 VFLNGNLIGVHRDPEELVETLRKLRRSGKISEEVSIVRDIREKEVRINTDGGRVCRPLIIVE 62
RNA_pol_Rpb2_5 pfam04567
RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of ...
 173-243 5.04e-22

RNA polymerase Rpb2, domain 5; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 5, is also known as the external 2 domain.


Pssm-ID: 428013 [Multi-domain]  Cd Length: 53  Bit Score: 86.06  E-value: 5.04e-22
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2037089942 173 WKGLVDKGVVEYLDAEEEETAMIIMTPEDLEEH-KLMRQGvpmedtradphrrikskpnPHVRTWTHCEIHP 243
Cdd:pfam04567   1 WSDLLREGVIEYLDAEEEETSMIAMTPEDLEESsREEREG-------------------PYAHTYTHCEIHP 53
RNA_pol_B_RPB2 cd00653
RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. ...
 1-266 2.10e-21

RNA polymerase beta subunit. RNA polymerases catalyse the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Each RNA polymerase complex contains two related members of this family, in each case they are the two largest subunits.The clamp is a mobile structure that grips DNA during elongation.


Pssm-ID: 238353 [Multi-domain]  Cd Length: 866  Bit Score: 93.40  E-value: 2.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTvgtpaeplidfmrqrgmdlleeydpvlnpkstkvflngtwvgvhknag 80
Cdd:cd00653   350 HPSHWGRICPIETPEGENCGLVKNLALMARIS------------------------------------------------ 381

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  81 qltemmrnlrrkgvlsfevtiirdvrereikiftdaGRVCRPLFVVENDpkspnngnlvlqrehcqkladdqniladlvg 160
Cdd:cd00653   382 ------------------------------------GRIERPYRIVEKE------------------------------- 394

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942 161 vteeeretlifgwkglvdkgvveyldaeeeetamiimtpedleehklmrqgvpmedtradphrrikskpnphvrtWTHCE 240
Cdd:cd00653   395 ---------------------------------------------------------------------------VTHIE 399

                         250       260
                  ....*....|....*....|....*.
gi 2037089942 241 IHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:cd00653   400 ISPSQILSVAASLIPFPEHNQSPRNL 425
RpoB COG0085
DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA ...
 1-266 1.37e-19

DNA-directed RNA polymerase, beta subunit/140 kD subunit [Transcription]; DNA-directed RNA polymerase, beta subunit/140 kD subunit is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 439855 [Multi-domain]  Cd Length: 1001  Bit Score: 87.86  E-value: 1.37e-19
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTvgtpaeplidfmrqrgmdlleEYdpvlnpkstkvflngtwvgvhknag 80
Cdd:COG0085    411 HPSHYGRMCPIETPEGPNIGLIGSLALYARVN---------------------EY------------------------- 444

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942   81 qltemmrnlrrkgvlsfevtiirdvrereikiftdaGRVCRPLFVVENdpkspnngnlvlqrehcqkladdqniladlvG 160
Cdd:COG0085    445 ------------------------------------GFIETPYRKVEN-------------------------------G 457

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2037089942  161 -VTEEeretlifgwkglvdkgvVEYLDAEEEETAMIIMTPEDLEEHklmrqGVPMEDTraDPHRRIKSKPNPHVRTWTHC 239
Cdd:COG0085    458 kVTDE-----------------IEYLTADEEENYYIAQANAPLDED-----GNFLEER--VLVRYRGEEVLVPPEEVDYM 513

                          250       260
                   ....*....|....*....|....*..
gi 2037089942  240 EIHPAMILGICASIIPFPDHNQSPRNT 266
Cdd:COG0085    514 DVSPKQIVSVATSLIPFLEHDDANRAL 540
RNA_pol_Rpb2_3 pfam04565
RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of ...
 1-30 2.02e-15

RNA polymerase Rpb2, domain 3; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). Domain 3, s also known as the fork domain and is proximal to catalytic site.


Pssm-ID: 428011 [Multi-domain]  Cd Length: 67  Bit Score: 69.09  E-value: 2.02e-15
                          10        20        30
                  ....*....|....*....|....*....|
gi 2037089942   1 HNTHWGLVCPAETPEGQACGLVKNLSLMCY 30
Cdd:pfam04565  38 HPSHWGRICPVETPEGPNCGLVKHLALYAR 67
PRK09606 PRK09606
DNA-directed RNA polymerase subunit B''; Validated
 1-48 2.33e-13

DNA-directed RNA polymerase subunit B''; Validated


Pssm-ID: 236587 [Multi-domain]  Cd Length: 494  Bit Score: 69.21  E-value: 2.33e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 2037089942   1 HNTHWGLVCPAETPEGQACGLVKNLSLMCYVTVGTPAEPLIDFMRQRG 48
Cdd:PRK09606  441 HPTQWGRICPSETPEGPNCGLVKNFAQMVEISTGEDEEEVKEILKELG 488
PRK09603 PRK09603
DNA-directed RNA polymerase subunit beta/beta';
1-26 5.62e-05

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 181983 [Multi-domain]  Cd Length: 2890  Bit Score: 44.53  E-value: 5.62e-05
                           10        20
                   ....*....|....*....|....*.
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLS 26
Cdd:PRK09603   565 HPTHYGRICPIETPEGQNIGLINTLS 590
rpoB PRK00405
DNA-directed RNA polymerase subunit beta; Reviewed
 1-26 1.30e-04

DNA-directed RNA polymerase subunit beta; Reviewed


Pssm-ID: 234749 [Multi-domain]  Cd Length: 1112  Bit Score: 43.17  E-value: 1.30e-04
                           10        20
                   ....*....|....*....|....*.
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLS 26
Cdd:PRK00405   472 HPTHYGRICPIETPEGPNIGLINSLA 497
RNA_pol_Rpb2_6 pfam00562
RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of ...
 250-266 1.60e-04

RNA polymerase Rpb2, domain 6; RNA polymerases catalyze the DNA dependent polymerization of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial. and chloroplast polymerases). This domain represents the hybrid binding domain and the wall domain. The hybrid binding domain binds the nascent RNA strand / template DNA strand in the Pol II transcription elongation complex. This domain contains the important structural motifs, switch 3 and the flap loop and binds an active site metal ion. This domain is also involved in binding to Rpb1 and Rpb3. Many of the bacterial members contain large insertions within this domain, as region known as dispensable region 2 (DRII).


Pssm-ID: 459854 [Multi-domain]  Cd Length: 371  Bit Score: 42.52  E-value: 1.60e-04
                          10
                  ....*....|....*..
gi 2037089942 250 CASIIPFPDHNQSPRNT 266
Cdd:pfam00562   1 VASLIPFVDHNQSPRNT 17
PRK14844 PRK14844
DNA-directed RNA polymerase subunit beta/beta';
1-27 2.04e-04

DNA-directed RNA polymerase subunit beta/beta';


Pssm-ID: 173305 [Multi-domain]  Cd Length: 2836  Bit Score: 42.69  E-value: 2.04e-04
                           10        20
                   ....*....|....*....|....*..
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLSL 27
Cdd:PRK14844   572 HPTHYGRICPIETPEGQNIGLINSLAI 598
rpoB CHL00207
RNA polymerase beta subunit; Provisional
 1-26 4.50e-03

RNA polymerase beta subunit; Provisional


Pssm-ID: 214397 [Multi-domain]  Cd Length: 1077  Bit Score: 38.15  E-value: 4.50e-03
                           10        20
                   ....*....|....*....|....*.
gi 2037089942    1 HNTHWGLVCPAETPEGQACGLVKNLS 26
Cdd:CHL00207   406 HPSHYGRICPIETPEGPNCGLIGSLA 431
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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