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Conserved domains on  [gi|2070384466|gb|QXS29855|]
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cytochrome b, partial (mitochondrion) [Drosophila obscura]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-285 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 562.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00156   72 LHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00156  152 QWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLIL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00156  232 LTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN 311

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINP 285
Cdd:MTH00156  312 KILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-285 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 562.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00156   72 LHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00156  152 QWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLIL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00156  232 LTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN 311

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINP 285
Cdd:MTH00156  312 KILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-283 3.30e-95

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 286.30  E-value: 3.30e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLD 78
Cdd:COG1290    91 MHHWGASLFFAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTW 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  79 LVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDIVGFIV 153
Cdd:COG1290   171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFV 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 154 MIFLLISLVLINPNllGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILMILPFYNLSKF 231
Cdd:COG1290   251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPV 328

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2070384466 232 RGIQFYPINQILFWTMLVTVILLTWIGARPveEPYVLLGQILTVVYFLYYLI 283
Cdd:COG1290   329 RSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-125 2.79e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 164.85  E-value: 2.79e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLD 78
Cdd:cd00284    74 LHANGASMFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGIT 153

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2070384466  79 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSN 125
Cdd:cd00284   154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
7-172 3.02e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.57  E-value: 3.02e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   7 SFFFICIYLHVGRGMYYGSYLFTP--TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLVQWVW 84
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  85 GGFAVDNATLTRFFTFHF-ILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLISLVL 163
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2070384466 164 INPNLLGDP 172
Cdd:pfam13631 161 INPIWLGGP 169
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 155-259 1.03e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 155 IFLLISLVLINPNLLGDPdnfipANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFY-NLSKFRG 233
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 2070384466 234 IQFYPINQILFwtmLVTVILLTWIGA 259
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLGI 145
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 1-285 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 562.48  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00156   72 LHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLV 151

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00156  152 QWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLIL 231

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00156  232 LTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPIN 311

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINP 285
Cdd:MTH00156  312 KILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-295 2.78e-178

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 496.74  E-value: 2.78e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00145   83 LHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00145  163 EWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVF 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00145  243 LVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLN 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINPLVSKWWDNLL 295
Cdd:MTH00145  323 QVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNIL 377
CYTB MTH00119
cytochrome b; Provisional
 1-296 5.31e-174

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 485.95  E-value: 5.31e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00119   83 LHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00119  163 EWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLT 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00119  243 LALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLS 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI-NPLVSKWWDNLLN 296
Cdd:MTH00119  323 QLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLIlFPLLGALENKMLN 379
CYTB MTH00131
cytochrome b; Provisional
 1-293 7.25e-174

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 485.70  E-value: 7.25e-174
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00131   82 LHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLV 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00131  162 QWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTS 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00131  242 LALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLT 321

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINPLVSKWWDN 293
Cdd:MTH00131  322 QFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLEN 374
CYTB MTH00016
cytochrome b; Validated
 1-295 8.00e-171

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 477.63  E-value: 8.00e-171
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00016   83 LHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00016  163 QWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLS 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00016  243 VVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLN 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINPLVSKWWDNLL 295
Cdd:MTH00016  323 QILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLL 377
CYTB MTH00074
cytochrome b; Provisional
 1-295 7.16e-170

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 475.32  E-value: 7.16e-170
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00074   83 IHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00074  163 QWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALAL 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00074  243 LSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLT 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINPLVSKWWDNLL 295
Cdd:MTH00074  323 QILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKL 377
CYTB MTH00191
cytochrome b; Provisional
 1-283 1.17e-168

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 471.71  E-value: 1.17e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00191   79 IHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLV 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00191  159 QWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLF 238

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00191  239 LVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLT 318

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI 283
Cdd:MTH00191  319 QVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLL 361
CYTB MTH00100
cytochrome b; Provisional
 1-295 2.40e-167

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 469.12  E-value: 2.40e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00100   82 LHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLV 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00100  162 EWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLML 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00100  242 LVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLS 321

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI-NPLVSKWWDNLL 295
Cdd:MTH00100  322 QCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILIlMPIASLIENNLL 377
CYTB MTH00034
cytochrome b; Validated
 1-288 3.88e-152

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 430.67  E-value: 3.88e-152
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00034   82 IHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIV 161

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00034  162 QWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSS 241

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00034  242 LALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLS 321

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*....
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI-NPLVS 288
Cdd:MTH00034  322 QIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFfFPLIS 370
CYTB MTH00224
cytochrome b; Provisional
 1-296 1.21e-137

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 393.90  E-value: 1.21e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00224   83 IHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00224  163 EWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSL 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00224  243 MVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLN 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLINPLVSKWWDNLLN 296
Cdd:MTH00224  323 QLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLLN 378
CYTB MTH00022
cytochrome b; Validated
 1-296 3.06e-137

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 392.91  E-value: 3.06e-137
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00022  161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00022  241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI-NPLVSKWWDNLLN 296
Cdd:MTH00022  321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVlIPLLGELENQLLF 377
CYTB MTH00053
cytochrome b; Provisional
 1-296 2.92e-132

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 380.21  E-value: 2.92e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00053   83 LHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIV 162

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLIS 160
Cdd:MTH00053  163 RWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSI 242

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPIN 240
Cdd:MTH00053  243 IVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLS 322

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI-NPLVSKWWDNLLN 296
Cdd:MTH00053  323 KILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLIlMPLAGYLENKLLK 379
CYTB MTH00033
cytochrome b; Provisional
 1-283 2.90e-100

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 298.78  E-value: 2.90e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00033   79 VHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIV 158

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMiFLLIS 160
Cdd:MTH00033  159 EWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL-FGVFV 237

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINP---NLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFY 237
Cdd:MTH00033  238 IIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFN 317

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2070384466 238 PINQILFWTMLVTVILLTWIGARPV-EEPYVLLGQILTVVYFLYYLI 283
Cdd:MTH00033  318 PTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLV 364
CYTB MTH00086
cytochrome b; Provisional
 1-283 5.41e-97

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 289.53  E-value: 5.41e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00086   71 FHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIV 150

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGfIVMIFLLIS 160
Cdd:MTH00086  151 MWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFII 229

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 161 LVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNlskFRGIQFYPIN 240
Cdd:MTH00086  230 FSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVN---NYTSCLNKLN 306

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2070384466 241 QILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI 283
Cdd:MTH00086  307 KFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILL 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-283 3.30e-95

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 286.30  E-value: 3.30e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLD 78
Cdd:COG1290    91 MHHWGASLFFAAVYLHMFRGFFYGAYKKPreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTW 170

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  79 LVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHQTGSNNPIG----LNSNIDKIPFHPYFTFKDIVGFIV 153
Cdd:COG1290   171 LVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFV 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 154 MIFLLISLVLINPNllGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIP--NKLGGVIALVLSIAILMILPFYNLSKF 231
Cdd:COG1290   251 FLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPV 328

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2070384466 232 RGIQFYPINQILFWTMLVTVILLTWIGARPveEPYVLLGQILTVVYFLYYLI 283
Cdd:COG1290   329 RSPRYRPVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 1-283 6.48e-72

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 225.63  E-value: 6.48e-72
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLV 80
Cdd:MTH00046   73 WHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVY 152

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  81 QWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNI-DKIPFHPYFTFKDIVGFIVMIFLLI 159
Cdd:MTH00046  153 KYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSNGYsDVVYFHSYFTVKDLFLFMVVCSLLV 232

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 160 SLVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIaLVLSIAILMILPFYNLSKFRGIqfypI 239
Cdd:MTH00046  233 FWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGSSVYSV----W 307

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2070384466 240 NQILFWTMLVTVILLTWIGARPVEEPYVLLGQILTVVYFLYYLI 283
Cdd:MTH00046  308 RQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-125 2.79e-50

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 164.85  E-value: 2.79e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLFT--PTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLD 78
Cdd:cd00284    74 LHANGASMFFLMLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGIT 153

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*..
gi 2070384466  79 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTGSN 125
Cdd:cd00284   154 LVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
7-172 3.02e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.57  E-value: 3.02e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   7 SFFFICIYLHVGRGMYYGSYLFTP--TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLDLVQWVW 84
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466  85 GGFAVDNATLTRFFTFHF-ILPFIVLAMTMIHLLFLHQTGSNNPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLISLVL 163
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2070384466 164 INPNLLGDP 172
Cdd:pfam13631 161 INPIWLGGP 169
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 126-272 5.08e-49

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 5.08e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 126 NPIGLNSNIDKIPFHPYFTFKDIVGFIVMIFLLISLVLINPNLLGDPDNFIPANPLVTPAHIQPEWYFLFAYAILRSIPN 205
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2070384466 206 KLGGVIALVLSIAILMILPFYNLSKFRGiQFYPINQILFWTMLVTVILLTWIGARPVEEPYVLLGQI 272
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQL 146
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-123 3.01e-45

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 151.38  E-value: 3.01e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYG--SYLFTPTWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGLD 78
Cdd:pfam00033  65 VHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDT 144

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*
gi 2070384466  79 LVQWVWGGFAVDNATLTRFFTFHFILPFIVLAMTMIHLLFLHQTG 123
Cdd:pfam00033 145 LVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
177-277 3.81e-43

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 143.00  E-value: 3.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 177 PANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFYNLSKFRGIQFYPINQILFWTMLVTVILLTW 256
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2070384466 257 IGARPVEEPYVLLGQILTVVY 277
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-128 7.69e-19

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 83.22  E-value: 7.69e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRGMYYGSYLfTP---TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGL 77
Cdd:PRK03735   93 MHHWGASLVIVMMFLHTLRVFFTGGYK-KPrelNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGD 171

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2070384466  78 DLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHQTGSNNPI 128
Cdd:PRK03735  172 FIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGPL 223
petB CHL00070
cytochrome b6
 1-128 1.74e-14

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 70.91  E-value: 1.74e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466   1 LHANGASFFFICIYLHVGRgMYYGSYLFTP---TWLVGVIILFLVMGTAFMGYVLPWGQMSFWGATVITNLLSAVPYLGL 77
Cdd:CHL00070   85 VHRWSASMMVLMMILHVFR-VYLTGGFKKPrelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGS 163

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2070384466  78 DLVQWVWGGFAVDNATLTRFFTFH-FILPFIVLAMTMIHLLFLHQTGSNNPI 128
Cdd:CHL00070  164 PLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 155-268 9.41e-13

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 64.81  E-value: 9.41e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 155 IFLLISLVLINPNLLGDPdnfipANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFY-NLSKFRG 233
Cdd:COG5679    49 IALCIGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQN 123

                          90       100       110
                  ....*....|....*....|....*....|....*...
gi 2070384466 234 IQFYPINQILFwtmLVTVILLTWIG---ARPVEEPYVL 268
Cdd:COG5679   124 PFRRPVATAVF---LFGTLVTLWLGigaALPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 155-259 7.45e-12

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 62.33  E-value: 7.45e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 155 IFLLISLVLINPNLLGDPdnfipANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFY-NLSKFRG 233
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 2070384466 234 IQFYPINQILFWTMLVTVILLTwIGA 259
Cdd:CHL00058  123 PFRRPVATTVFLIGTAVALWLG-IGA 147
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 155-259 1.03e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 59.04  E-value: 1.03e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2070384466 155 IFLLISLVLINPNLLGDPdnfipANPLVTPAHIQPEWYFLFAYAILRSIPNKLGGVIALVLSIAILMILPFY-NLSKFRG 233
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQN 122

                          90       100
                  ....*....|....*....|....*.
gi 2070384466 234 IQFYPINQILFwtmLVTVILLTWIGA 259
Cdd:TIGR01156 123 PFRRPVATTVF---LFGTVVALWLGI 145
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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