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Conserved domains on  [gi|1483050799|gb|RJQ17367|]
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hypothetical protein C4573_04920, partial [Candidatus Woesearchaeota archaeon]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
HTH_CRP super family cl46859
helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic ...
 15-58 2.02e-11

helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.


The actual alignment was detected with superfamily member pfam01978:

Pssm-ID: 481199 [Multi-domain]  Cd Length: 67  Bit Score: 52.52  E-value: 2.02e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1483050799 15 FSLNLYEVKIWAALLSRGVSTAGELSDIANVPRSRSYDVLESLE 58
Cdd:pfam01978  4 LGLSEYEAKVYLALLKLGPATADEIAEESGVPRSKVYEVLRSLE 47
 
Name Accession Description Interval E-value
TrmB pfam01978
Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown ...
 15-58 2.02e-11

Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter in Thermococcus litoralis.


Pssm-ID: 396525 [Multi-domain]  Cd Length: 67  Bit Score: 52.52  E-value: 2.02e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1483050799 15 FSLNLYEVKIWAALLSRGVSTAGELSDIANVPRSRSYDVLESLE 58
Cdd:pfam01978  4 LGLSEYEAKVYLALLKLGPATADEIAEESGVPRSKVYEVLRSLE 47
YrhO COG1378
Sugar-specific transcriptional regulator TrmB [Transcription];
17-58 4.47e-11

Sugar-specific transcriptional regulator TrmB [Transcription];


Pssm-ID: 440988 [Multi-domain]  Cd Length: 238  Bit Score: 55.03  E-value: 4.47e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1483050799  17 LNLYEVKIWAALLSRGVSTAGELSDIANVPRSRSYDVLESLE 58
Cdd:COG1378    11 LSEYEAKVYLALLELGPATASELAKASGVPRSRVYDVLESLE 52
 
Name Accession Description Interval E-value
TrmB pfam01978
Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown ...
 15-58 2.02e-11

Sugar-specific transcriptional regulator TrmB; One member of this family, TrmB, has been shown to be a sugar-specific transcriptional regulator of the trehalose/maltose ABC transporter in Thermococcus litoralis.


Pssm-ID: 396525 [Multi-domain]  Cd Length: 67  Bit Score: 52.52  E-value: 2.02e-11
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....
gi 1483050799 15 FSLNLYEVKIWAALLSRGVSTAGELSDIANVPRSRSYDVLESLE 58
Cdd:pfam01978  4 LGLSEYEAKVYLALLKLGPATADEIAEESGVPRSKVYEVLRSLE 47
YrhO COG1378
Sugar-specific transcriptional regulator TrmB [Transcription];
17-58 4.47e-11

Sugar-specific transcriptional regulator TrmB [Transcription];


Pssm-ID: 440988 [Multi-domain]  Cd Length: 238  Bit Score: 55.03  E-value: 4.47e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1483050799  17 LNLYEVKIWAALLSRGVSTAGELSDIANVPRSRSYDVLESLE 58
Cdd:COG1378    11 LSEYEAKVYLALLELGPATASELAKASGVPRSRVYDVLESLE 52
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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