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Conserved domains on  [gi|1490893269|gb|RLE28225|]
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hypothetical protein DRJ65_00370 [Acidobacteria bacterium]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 476-594 9.66e-13

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


:

Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 64.75  E-value: 9.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490893269 476 SGGGLVINEVDYDQPGTDSlEFVEIYNPGSASVNLTDISLVRINGDNNAeygripLSPVSSLGFGEYLVIGSSAllstvP 555
Cdd:pfam00932   3 ATGDVVISEVVYDGSGGND-EFIELYNTGSKAVDLSGWKLQDASGGTYT------FPNGTTLAPGQTVVVWTGS-----G 70

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1490893269 556 PSTKTITFALASNNLQNGAPDGLAIIDeASSALIDALSY 594
Cdd:pfam00932  71 TNSATAGYWGPSNAVWNNGGDAVALYD-ANGELVDSVGY 108
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 141-168 6.67e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


:

Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 42.87  E-value: 6.67e-06
                          10        20
                  ....*....|....*....|....*...
gi 1490893269 141 DCNDLIAAINPGETDICDDVDNDCSGVA 168
Cdd:pfam11617   1 DCDDSDPAIHPGAAEICDGIDNNCDGVV 28
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 476-594 9.66e-13

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 64.75  E-value: 9.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490893269 476 SGGGLVINEVDYDQPGTDSlEFVEIYNPGSASVNLTDISLVRINGDNNAeygripLSPVSSLGFGEYLVIGSSAllstvP 555
Cdd:pfam00932   3 ATGDVVISEVVYDGSGGND-EFIELYNTGSKAVDLSGWKLQDASGGTYT------FPNGTTLAPGQTVVVWTGS-----G 70

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1490893269 556 PSTKTITFALASNNLQNGAPDGLAIIDeASSALIDALSY 594
Cdd:pfam00932  71 TNSATAGYWGPSNAVWNNGGDAVALYD-ANGELVDSVGY 108
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 141-168 6.67e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 42.87  E-value: 6.67e-06
                          10        20
                  ....*....|....*....|....*...
gi 1490893269 141 DCNDLIAAINPGETDICDDVDNDCSGVA 168
Cdd:pfam11617   1 DCDDSDPAIHPGAAEICDGIDNNCDGVV 28
 
Name Accession Description Interval E-value
LTD pfam00932
Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is ...
 476-594 9.66e-13

Lamin Tail Domain; The lamin-tail domain (LTD), which has an immunoglobulin (Ig) fold, is found in Nuclear Lamins, Chlo1887 from Chloroflexus, and several bacterial proteins where it occurs with membrane associated hydrolases of the metallo-beta-lactamase,synaptojanin, and calcineurin-like phosphoesterase superfamilies.


Pssm-ID: 460003 [Multi-domain]  Cd Length: 108  Bit Score: 64.75  E-value: 9.66e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490893269 476 SGGGLVINEVDYDQPGTDSlEFVEIYNPGSASVNLTDISLVRINGDNNAeygripLSPVSSLGFGEYLVIGSSAllstvP 555
Cdd:pfam00932   3 ATGDVVISEVVYDGSGGND-EFIELYNTGSKAVDLSGWKLQDASGGTYT------FPNGTTLAPGQTVVVWTGS-----G 70

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1490893269 556 PSTKTITFALASNNLQNGAPDGLAIIDeASSALIDALSY 594
Cdd:pfam00932  71 TNSATAGYWGPSNAVWNNGGDAVALYD-ANGELVDSVGY 108
Cu-binding_MopE pfam11617
Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other ...
 141-168 6.67e-06

Putative metal-binding motif; The seqeunce of structure 2vov is not matched in any other sequence either in UniProt or in NCBI (Sep2014). The model is of a short repeat not found on the G1UBC6 - 2vov - protein. The presence of conserved cysteine residues and the lack of hydrophobic residues suggests that this repeat might be a metal-binding site, perhaps for zinc or calcium ions.


Pssm-ID: 463309 [Multi-domain]  Cd Length: 28  Bit Score: 42.87  E-value: 6.67e-06
                          10        20
                  ....*....|....*....|....*...
gi 1490893269 141 DCNDLIAAINPGETDICDDVDNDCSGVA 168
Cdd:pfam11617   1 DCDDSDPAIHPGAAEICDGIDNNCDGVV 28
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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