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Conserved domains on  [gi|1490918185|gb|RLE47832|]
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hypothetical protein DRJ25_01450 [Candidatus Woesearchaeota archaeon]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RocR super family cl34674
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 122-215 8.71e-08

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


The actual alignment was detected with superfamily member COG3829:

Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 51.70  E-value: 8.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490918185 122 EVQNIIEQ---TLDQykNIIRPEKLRamyehaPEISADIVKHLPESPMTLKEAEEFFDRKYLKIKLKENNGNISRTAKKI 198
Cdd:COG3829   360 ELENVIERavvLSEG--DVITPEHLP------EYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKAL 431

                          90
                  ....*....|....*..
gi 1490918185 199 GLRFETLFRKIKKLGIN 215
Cdd:COG3829   432 GISRSTLYRKLKKYGIK 448
PRK15115 super family cl33089
response regulator GlrR; Provisional
 37-109 4.89e-03

response regulator GlrR; Provisional


The actual alignment was detected with superfamily member PRK15115:

Pssm-ID: 185070 [Multi-domain]  Cd Length: 444  Bit Score: 37.51  E-value: 4.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1490918185  37 ISDALKKNPLleVAVNTNLP-YKEAKKAFKKAYITHLLRMNFGNVSEVARISGVDRRSIHRLISDLKIKVDNFR 109
Cdd:PRK15115  372 ISDALVEQAL--EGENTALPtFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443
 
Name Accession Description Interval E-value
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 122-215 8.71e-08

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 51.70  E-value: 8.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490918185 122 EVQNIIEQ---TLDQykNIIRPEKLRamyehaPEISADIVKHLPESPMTLKEAEEFFDRKYLKIKLKENNGNISRTAKKI 198
Cdd:COG3829   360 ELENVIERavvLSEG--DVITPEHLP------EYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKAL 431

                          90
                  ....*....|....*..
gi 1490918185 199 GLRFETLFRKIKKLGIN 215
Cdd:COG3829   432 GISRSTLYRKLKKYGIK 448
HTH_8 pfam02954
Bacterial regulatory protein, Fis family;
173-211 9.11e-05

Bacterial regulatory protein, Fis family;


Pssm-ID: 427077 [Multi-domain]  Cd Length: 40  Bit Score: 38.53  E-value: 9.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1490918185 173 EFFDRKYLKIKLKENNGNISRTAKKIGLRFETLFRKIKK 211
Cdd:pfam02954   2 EEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
PRK11361 PRK11361
acetoacetate metabolism transcriptional regulator AtoC;
122-215 1.20e-04

acetoacetate metabolism transcriptional regulator AtoC;


Pssm-ID: 183099 [Multi-domain]  Cd Length: 457  Bit Score: 42.53  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490918185 122 EVQNIIEQTLDQYK-NIIRPEKLRAMYeHAPEISADIVKHLPESPMTLKEAEEFFDRKYLKIKLKENNGNISRTAKKIGL 200
Cdd:PRK11361  364 ELSNVIERAVVMNSgPIIFSEDLPPQI-RQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGI 442

                          90
                  ....*....|....*
gi 1490918185 201 RFETLFRKIKKLGIN 215
Cdd:PRK11361  443 SRRALMYKLQEYGID 457
PRK15115 PRK15115
response regulator GlrR; Provisional
 37-109 4.89e-03

response regulator GlrR; Provisional


Pssm-ID: 185070 [Multi-domain]  Cd Length: 444  Bit Score: 37.51  E-value: 4.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1490918185  37 ISDALKKNPLleVAVNTNLP-YKEAKKAFKKAYITHLLRMNFGNVSEVARISGVDRRSIHRLISDLKIKVDNFR 109
Cdd:PRK15115  372 ISDALVEQAL--EGENTALPtFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443
 
Name Accession Description Interval E-value
RocR COG3829
RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis ...
 122-215 8.71e-08

RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 443041 [Multi-domain]  Cd Length: 448  Bit Score: 51.70  E-value: 8.71e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490918185 122 EVQNIIEQ---TLDQykNIIRPEKLRamyehaPEISADIVKHLPESPMTLKEAEEFFDRKYLKIKLKENNGNISRTAKKI 198
Cdd:COG3829   360 ELENVIERavvLSEG--DVITPEHLP------EYLLEEAEAASAAEEGSLKEALEEVEKELIEEALEKTGGNKSKAAKAL 431

                          90
                  ....*....|....*..
gi 1490918185 199 GLRFETLFRKIKKLGIN 215
Cdd:COG3829   432 GISRSTLYRKLKKYGIK 448
AtoC COG2204
DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, ...
 135-213 2.55e-07

DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms];


Pssm-ID: 441806 [Multi-domain]  Cd Length: 418  Bit Score: 50.35  E-value: 2.55e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1490918185 135 KNIIrpEKLRAMYEhAPEISADivkHLPEspmTLKEAEeffdRKYLKIKLKENNGNISRTAKKIGLRFETLFRKIKKLG 213
Cdd:COG2204   353 ENVI--ERAVILAD-GEVITAE---DLPE---ALEEVE----RELIERALEETGGNVSRAAELLGISRRTLYRKLKKYG 418
FhlA COG3604
FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis ...
 169-215 4.04e-05

FhlA-type transcriptional regulator, contains GAF, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms];


Pssm-ID: 442823 [Multi-domain]  Cd Length: 338  Bit Score: 43.68  E-value: 4.04e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 1490918185 169 KEAEEFFDRKYLKIKLKENNGNISRTAKKIGLRFETLFRKIKKLGIN 215
Cdd:COG3604   292 REALEEVEREHILEALERTGGNIAGAARLLGLTPSTLRSRMKKLGIK 338
HTH_8 pfam02954
Bacterial regulatory protein, Fis family;
173-211 9.11e-05

Bacterial regulatory protein, Fis family;


Pssm-ID: 427077 [Multi-domain]  Cd Length: 40  Bit Score: 38.53  E-value: 9.11e-05
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 1490918185 173 EFFDRKYLKIKLKENNGNISRTAKKIGLRFETLFRKIKK 211
Cdd:pfam02954   2 EEVEKELIEAALERTGGNKSKAARLLGISRRTLYRKLKK 40
PRK11361 PRK11361
acetoacetate metabolism transcriptional regulator AtoC;
122-215 1.20e-04

acetoacetate metabolism transcriptional regulator AtoC;


Pssm-ID: 183099 [Multi-domain]  Cd Length: 457  Bit Score: 42.53  E-value: 1.20e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1490918185 122 EVQNIIEQTLDQYK-NIIRPEKLRAMYeHAPEISADIVKHLPESPMTLKEAEEFFDRKYLKIKLKENNGNISRTAKKIGL 200
Cdd:PRK11361  364 ELSNVIERAVVMNSgPIIFSEDLPPQI-RQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEGNRTRTALMLGI 442

                          90
                  ....*....|....*
gi 1490918185 201 RFETLFRKIKKLGIN 215
Cdd:PRK11361  443 SRRALMYKLQEYGID 457
COG4567 COG4567
DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains ...
 140-211 4.67e-04

DNA-binding response regulator, ActR/RegA family, consists of REC and Fis-type HTH domains [Signal transduction mechanisms, Transcription];


Pssm-ID: 443624 [Multi-domain]  Cd Length: 177  Bit Score: 39.51  E-value: 4.67e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1490918185 140 PEKLRAMYEHAPEISADivkhLPESPMTLKEAEeffdRKYLKIKLKENNGNISRTAKKIGLRFETLFRKIKK 211
Cdd:COG4567   109 ADDLLAALERAEGDAPA----PPENPMSLDRLE----WEHIQRVLAECDGNISATARALGMHRRTLQRKLAK 172
PRK15115 PRK15115
response regulator GlrR; Provisional
 37-109 4.89e-03

response regulator GlrR; Provisional


Pssm-ID: 185070 [Multi-domain]  Cd Length: 444  Bit Score: 37.51  E-value: 4.89e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1490918185  37 ISDALKKNPLleVAVNTNLP-YKEAKKAFKKAYITHLLRMNFGNVSEVARISGVDRRSIHRLISDLKIKVDNFR 109
Cdd:PRK15115  372 ISDALVEQAL--EGENTALPtFVEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFK 443
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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