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Conserved domains on  [gi|1491309312|gb|RLI72970|]
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MAG: peroxiredoxin family protein, partial [Candidatus Gerdarchaeota archaeon]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG2044 super family cl42771
Predicted peroxiredoxin, DsrE/DsrF-like family [General function prediction only];
1-42 5.64e-13

Predicted peroxiredoxin, DsrE/DsrF-like family [General function prediction only];


The actual alignment was detected with superfamily member COG2210:

Pssm-ID: 478468  Cd Length: 156  Bit Score: 57.92  E-value: 5.64e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVtGYMGAAGFLDIAADCDIQLFI 42
Cdd:COG2210   116 ACQMSMDLMGIKKEELIDGV-EIGGAATFLEEAEEADINLFI 156
 
Name Accession Description Interval E-value
YrkE COG2210
Peroxiredoxin family protein [Energy production and conversion];
1-42 5.64e-13

Peroxiredoxin family protein [Energy production and conversion];


Pssm-ID: 441812  Cd Length: 156  Bit Score: 57.92  E-value: 5.64e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVtGYMGAAGFLDIAADCDIQLFI 42
Cdd:COG2210   116 ACQMSMDLMGIKKEELIDGV-EIGGAATFLEEAEEADINLFI 156
DrsE_2 pfam13686
DsrE/DsrF/DrsH-like family; DsrE is a small soluble protein involved in intracellular sulfur ...
 1-41 7.69e-12

DsrE/DsrF/DrsH-like family; DsrE is a small soluble protein involved in intracellular sulfur reduction. The family also includes YrkE proteins.


Pssm-ID: 433404  Cd Length: 156  Bit Score: 55.02  E-value: 7.69e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVTgYMGAAGFLDIAADCDIQLF 41
Cdd:pfam13686 117 ACTMTMDLMGIKKEELIDGVE-IAGAATYLGDAEESDVNLF 156
 
Name Accession Description Interval E-value
YrkE COG2210
Peroxiredoxin family protein [Energy production and conversion];
1-42 5.64e-13

Peroxiredoxin family protein [Energy production and conversion];


Pssm-ID: 441812  Cd Length: 156  Bit Score: 57.92  E-value: 5.64e-13
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVtGYMGAAGFLDIAADCDIQLFI 42
Cdd:COG2210   116 ACQMSMDLMGIKKEELIDGV-EIGGAATFLEEAEEADINLFI 156
DrsE_2 pfam13686
DsrE/DsrF/DrsH-like family; DsrE is a small soluble protein involved in intracellular sulfur ...
 1-41 7.69e-12

DsrE/DsrF/DrsH-like family; DsrE is a small soluble protein involved in intracellular sulfur reduction. The family also includes YrkE proteins.


Pssm-ID: 433404  Cd Length: 156  Bit Score: 55.02  E-value: 7.69e-12
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVTgYMGAAGFLDIAADCDIQLF 41
Cdd:pfam13686 117 ACTMTMDLMGIKKEELIDGVE-IAGAATYLGDAEESDVNLF 156
COG2044 COG2044
Predicted peroxiredoxin, DsrE/DsrF-like family [General function prediction only];
1-41 5.40e-04

Predicted peroxiredoxin, DsrE/DsrF-like family [General function prediction only];


Pssm-ID: 441647  Cd Length: 121  Bit Score: 34.10  E-value: 5.40e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 1491309312   1 ACTATMDLMNIKKEDLIPEVtGYMGAAGFLDIAADCDIQLF 41
Cdd:COG2044    80 VCEPCLKARGLTEEDLIPGV-EIAGAADFAELALEADARVL 119
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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