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Conserved domains on  [gi|1519716972|gb|RPG86543|]
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MAG: DUF971 domain-containing protein [Coraliomargarita sp. TMED73]

Protein Classification

COG3536 superfamily protein( domain architecture ID 1905239)

COG3536 superfamily protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
COG3536 super family cl43893
Uncharacterized conserved protein, DUF971 family [Function unknown];
1-96 1.21e-31

Uncharacterized conserved protein, DUF971 family [Function unknown];


The actual alignment was detected with superfamily member COG3536:

Pssm-ID: 442757  Cd Length: 124  Bit Score: 107.23  E-value: 1.21e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519716972   1 MNPEDIQII--GGELCIRWQDGSETYLNAEKLRAHSPSAENIGEKdilgnqyGGQgPKTFPG---IQIVRLDTIGNYALR 75
Cdd:COG3536     5 PWPTEIRLHqaSRVLEITFDDGHRFRLPAEYLRVYSPSAEVQGHG-------PGQ-EVLQPGkrdVNITGIEPVGNYAVR 76

                          90       100
                  ....*....|....*....|.
gi 1519716972  76 PTFSDGHSSGIYSWDYLRNLG 96
Cdd:COG3536    77 LTFDDGHDSGIYSWDYLYELG 97
 
Name Accession Description Interval E-value
COG3536 COG3536
Uncharacterized conserved protein, DUF971 family [Function unknown];
1-96 1.21e-31

Uncharacterized conserved protein, DUF971 family [Function unknown];


Pssm-ID: 442757  Cd Length: 124  Bit Score: 107.23  E-value: 1.21e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519716972   1 MNPEDIQII--GGELCIRWQDGSETYLNAEKLRAHSPSAENIGEKdilgnqyGGQgPKTFPG---IQIVRLDTIGNYALR 75
Cdd:COG3536     5 PWPTEIRLHqaSRVLEITFDDGHRFRLPAEYLRVYSPSAEVQGHG-------PGQ-EVLQPGkrdVNITGIEPVGNYAVR 76

                          90       100
                  ....*....|....*....|.
gi 1519716972  76 PTFSDGHSSGIYSWDYLRNLG 96
Cdd:COG3536    77 LTFDDGHDSGIYSWDYLYELG 97
GBBH-like_N pfam06155
Gamma-butyrobetaine hydroxylase-like, N-terminal; This domain is found in several proteins ...
 10-93 2.69e-26

Gamma-butyrobetaine hydroxylase-like, N-terminal; This domain is found in several proteins including gamma-butyrobetaine dioxygenase, Fe-S cluster assembly factor HCF101 and trimethyllysine dioxygenase proteins. Gamma-butyrobetaine hydroxylase (GBBH) is a alpha-ketoglutarate-dependent dioxygenase that catalyzes the biosynthesis of L-carnitine by hydroxylation of gamma-butyrobetaine (GBB). GBBH is a dimeric enzyme. The monomer consists of a catalytic double-stranded beta-helix domain and a smaller N-terminal domain. The N-terminal domain has a bound Zn ion, which is coordinated by three cysteines and one histidine. The N-terminal domain could facilitate dimer formation, but its precise function is not known. Other family members have been suggested to be involved in FeS cluster maintenance (see Supplementary note 5 in.)


Pssm-ID: 461840 [Multi-domain]  Cd Length: 87  Bit Score: 92.67  E-value: 2.69e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519716972 10 GGELCIRWQDGSETYLNAEKLRAHSPSAENIGEkdiLGNQYGGQGPKTFPGIQIVRLDTIGNYALRPTFSDGHSSGIYSW 89
Cdd:pfam06155  7 SRVLEIEWDDGKTSRLPAEWLRVNCPCAECRGH---GPGQRLLQTGKIPRDVKIVSIEPVGNYAVRIVFSDGHDSGIYSW 83


                 ....
gi 1519716972 90 DYLR 93
Cdd:pfam06155 84 DYLR 87
 
Name Accession Description Interval E-value
COG3536 COG3536
Uncharacterized conserved protein, DUF971 family [Function unknown];
1-96 1.21e-31

Uncharacterized conserved protein, DUF971 family [Function unknown];


Pssm-ID: 442757  Cd Length: 124  Bit Score: 107.23  E-value: 1.21e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519716972   1 MNPEDIQII--GGELCIRWQDGSETYLNAEKLRAHSPSAENIGEKdilgnqyGGQgPKTFPG---IQIVRLDTIGNYALR 75
Cdd:COG3536     5 PWPTEIRLHqaSRVLEITFDDGHRFRLPAEYLRVYSPSAEVQGHG-------PGQ-EVLQPGkrdVNITGIEPVGNYAVR 76

                          90       100
                  ....*....|....*....|.
gi 1519716972  76 PTFSDGHSSGIYSWDYLRNLG 96
Cdd:COG3536    77 LTFDDGHDSGIYSWDYLYELG 97
GBBH-like_N pfam06155
Gamma-butyrobetaine hydroxylase-like, N-terminal; This domain is found in several proteins ...
 10-93 2.69e-26

Gamma-butyrobetaine hydroxylase-like, N-terminal; This domain is found in several proteins including gamma-butyrobetaine dioxygenase, Fe-S cluster assembly factor HCF101 and trimethyllysine dioxygenase proteins. Gamma-butyrobetaine hydroxylase (GBBH) is a alpha-ketoglutarate-dependent dioxygenase that catalyzes the biosynthesis of L-carnitine by hydroxylation of gamma-butyrobetaine (GBB). GBBH is a dimeric enzyme. The monomer consists of a catalytic double-stranded beta-helix domain and a smaller N-terminal domain. The N-terminal domain has a bound Zn ion, which is coordinated by three cysteines and one histidine. The N-terminal domain could facilitate dimer formation, but its precise function is not known. Other family members have been suggested to be involved in FeS cluster maintenance (see Supplementary note 5 in.)


Pssm-ID: 461840 [Multi-domain]  Cd Length: 87  Bit Score: 92.67  E-value: 2.69e-26
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1519716972 10 GGELCIRWQDGSETYLNAEKLRAHSPSAENIGEkdiLGNQYGGQGPKTFPGIQIVRLDTIGNYALRPTFSDGHSSGIYSW 89
Cdd:pfam06155  7 SRVLEIEWDDGKTSRLPAEWLRVNCPCAECRGH---GPGQRLLQTGKIPRDVKIVSIEPVGNYAVRIVFSDGHDSGIYSW 83


                 ....
gi 1519716972 90 DYLR 93
Cdd:pfam06155 84 DYLR 87
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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