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Conserved domains on  [gi|1534522932|gb|RSH86508|]
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hypothetical protein EHS24_004768 [Apiotrichum porosum]

Protein Classification

homeobox domain-containing protein( domain architecture ID 10052840)

homeobox domain-containing protein may be involved in the transcriptional regulation of key eukaryotic developmental processes

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
186-242 7.81e-22

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


:

Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 89.22  E-value: 7.81e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1534522932 186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIKNQ 242
Cdd:cd00086     2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
PHA03247 super family cl33720
large tegument protein UL36; Provisional
273-592 1.45e-07

large tegument protein UL36; Provisional


The actual alignment was detected with superfamily member PHA03247:

Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  273 APAAGGLKASPPTPLNLSAGGLTPTNGSVAPPTPTDPSKTPVPHNPGTPNALP-----PPMQPPASISPRPASSDQSNKP 347
Cdd:PHA03247  2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPaaspaGPLPPPTSAQPTAPPPPPGPPP 2847
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  348 SLLLPGGGRL---DMNRRVSlAGGDVASVEHWVRQRKQQMGHTPPQASV-SASNSPMGLAAAARRNSQPYPTQIITSHIP 423
Cdd:PHA03247  2848 PSLPLGGSVApggDVRRRPP-SRSPAAKPAAPARPPVRRLARPAVSRSTeSFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  424 DDPnAAALSRSALPSPKVSPNGRMPGALLFTAMRNNTIRRASMPGGAQLISTTafTPPRVPSFNHPVSSSQPQSRILARE 503
Cdd:PHA03247  2927 PQP-QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFR--VPQPAPSREAPASSTPPLTGHSLSR 3003
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  504 LSPIKDQ---DTEIDPslrGGVPMTYVTPPPSAYPSDGSYLSVPSSTESAFMYSLNPgLPFAPNSPLPNPSFSfgGTPTS 580
Cdd:PHA03247  3004 VSSWASSlalHEETDP---PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDP-LPPEPHDPFAHEPDP--ATPEA 3077
                          330
                   ....*....|..
gi 1534522932  581 DVPAAPiHNHVG 592
Cdd:PHA03247  3078 GARESP-SSQFG 3088
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
186-242 7.81e-22

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 89.22  E-value: 7.81e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1534522932 186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIKNQ 242
Cdd:cd00086     2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
Homeodomain pfam00046
Homeodomain;
186-241 3.70e-21

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 87.56  E-value: 3.70e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1534522932 186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIKN 241
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
186-240 6.10e-21

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 86.92  E-value: 6.10e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1534522932  186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIK 240
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
183-240 4.37e-20

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 87.88  E-value: 4.37e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1534522932 183 LEVKHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIK 240
Cdd:COG5576    50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
PHA03247 PHA03247
large tegument protein UL36; Provisional
273-592 1.45e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  273 APAAGGLKASPPTPLNLSAGGLTPTNGSVAPPTPTDPSKTPVPHNPGTPNALP-----PPMQPPASISPRPASSDQSNKP 347
Cdd:PHA03247  2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPaaspaGPLPPPTSAQPTAPPPPPGPPP 2847
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  348 SLLLPGGGRL---DMNRRVSlAGGDVASVEHWVRQRKQQMGHTPPQASV-SASNSPMGLAAAARRNSQPYPTQIITSHIP 423
Cdd:PHA03247  2848 PSLPLGGSVApggDVRRRPP-SRSPAAKPAAPARPPVRRLARPAVSRSTeSFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  424 DDPnAAALSRSALPSPKVSPNGRMPGALLFTAMRNNTIRRASMPGGAQLISTTafTPPRVPSFNHPVSSSQPQSRILARE 503
Cdd:PHA03247  2927 PQP-QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFR--VPQPAPSREAPASSTPPLTGHSLSR 3003
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  504 LSPIKDQ---DTEIDPslrGGVPMTYVTPPPSAYPSDGSYLSVPSSTESAFMYSLNPgLPFAPNSPLPNPSFSfgGTPTS 580
Cdd:PHA03247  3004 VSSWASSlalHEETDP---PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDP-LPPEPHDPFAHEPDP--ATPEA 3077
                          330
                   ....*....|..
gi 1534522932  581 DVPAAPiHNHVG 592
Cdd:PHA03247  3078 GARESP-SSQFG 3088
 
Name Accession Description Interval E-value
homeodomain cd00086
Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic ...
186-242 7.81e-22

Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.


Pssm-ID: 238039 [Multi-domain]  Cd Length: 59  Bit Score: 89.22  E-value: 7.81e-22
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 1534522932 186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIKNQ 242
Cdd:cd00086     2 RKRTRFTPEQLEELEKEFEKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRS 58
Homeodomain pfam00046
Homeodomain;
186-241 3.70e-21

Homeodomain;


Pssm-ID: 459649 [Multi-domain]  Cd Length: 57  Bit Score: 87.56  E-value: 3.70e-21
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 1534522932 186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIKN 241
Cdd:pfam00046   2 RKRTTFTPEQLEELEKEFQENPYPSAEEREELAAQLGLTERQVKVWFQNRRAKWKR 57
HOX smart00389
Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key ...
186-240 6.10e-21

Homeodomain; DNA-binding factors that are involved in the transcriptional regulation of key developmental processes


Pssm-ID: 197696 [Multi-domain]  Cd Length: 57  Bit Score: 86.92  E-value: 6.10e-21
                           10        20        30        40        50
                   ....*....|....*....|....*....|....*....|....*....|....*
gi 1534522932  186 KHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIK 240
Cdd:smart00389   3 RKRTSFTPEQLEELEKEFQKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
COG5576 COG5576
Homeodomain-containing transcription factor [Transcription];
183-240 4.37e-20

Homeodomain-containing transcription factor [Transcription];


Pssm-ID: 227863 [Multi-domain]  Cd Length: 156  Bit Score: 87.88  E-value: 4.37e-20
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 1534522932 183 LEVKHRRRTTPEQLRVLEHWFAINPRPDNALRERLAYELGITKRNVQVWFQNRRAKIK 240
Cdd:COG5576    50 PPKSKRRRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEK 107
PHA03247 PHA03247
large tegument protein UL36; Provisional
273-592 1.45e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.45e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  273 APAAGGLKASPPTPLNLSAGGLTPTNGSVAPPTPTDPSKTPVPHNPGTPNALP-----PPMQPPASISPRPASSDQSNKP 347
Cdd:PHA03247  2768 APAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPaaspaGPLPPPTSAQPTAPPPPPGPPP 2847
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  348 SLLLPGGGRL---DMNRRVSlAGGDVASVEHWVRQRKQQMGHTPPQASV-SASNSPMGLAAAARRNSQPYPTQIITSHIP 423
Cdd:PHA03247  2848 PSLPLGGSVApggDVRRRPP-SRSPAAKPAAPARPPVRRLARPAVSRSTeSFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  424 DDPnAAALSRSALPSPKVSPNGRMPGALLFTAMRNNTIRRASMPGGAQLISTTafTPPRVPSFNHPVSSSQPQSRILARE 503
Cdd:PHA03247  2927 PQP-QPPPPPPPRPQPPLAPTTDPAGAGEPSGAVPQPWLGALVPGRVAVPRFR--VPQPAPSREAPASSTPPLTGHSLSR 3003
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  504 LSPIKDQ---DTEIDPslrGGVPMTYVTPPPSAYPSDGSYLSVPSSTESAFMYSLNPgLPFAPNSPLPNPSFSfgGTPTS 580
Cdd:PHA03247  3004 VSSWASSlalHEETDP---PPVSLKQTLWPPDDTEDSDADSLFDSDSERSDLEALDP-LPPEPHDPFAHEPDP--ATPEA 3077
                          330
                   ....*....|..
gi 1534522932  581 DVPAAPiHNHVG 592
Cdd:PHA03247  3078 GARESP-SSQFG 3088
PHA03247 PHA03247
large tegument protein UL36; Provisional
300-588 1.47e-07

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 55.71  E-value: 1.47e-07
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  300 SVAPPTPTDPSKTpvPHNPGTPNALPP---PMQPPASiSPRPASSDQSNKPSLLLP---------GGGRLDMNRRVSLAG 367
Cdd:PHA03247  2595 SARPRAPVDDRGD--PRGPAPPSPLPPdthAPDPPPP-SPSPAANEPDPHPPPTVPpperprddpAPGRVSRPRRARRLG 2671
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  368 GDVASVEHWVRQRKQQMghTPPQASVSASNSPmglaAAARRNSQPYPTQiITSHIPDDPNAAAlSRSALPSPKVSPNGRM 447
Cdd:PHA03247  2672 RAAQASSPPQRPRRRAA--RPTVGSLTSLADP----PPPPPTPEPAPHA-LVSATPLPPGPAA-ARQASPALPAAPAPPA 2743
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  448 PGALLFTAMRNNTIRRASMPGGAqlistTAFTPPRVPSFNHPVSSSQPQSRILARELSPIKDQDTEIDPSL--------- 518
Cdd:PHA03247  2744 VPAGPATPGGPARPARPPTTAGP-----PAPAPPAAPAAGPPRRLTRPAVASLSESRESLPSPWDPADPPAavlapaaal 2818
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 1534522932  519 -RGGVPMTYVTPPPSAYPSDGSYLSVPSSTESAFMYSLNPGLPFAPNSPlpnpsfsfgGTPTSDVPAAPIH 588
Cdd:PHA03247  2819 pPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPGGDVRRRPP---------SRSPAAKPAAPAR 2880
PHA03247 PHA03247
large tegument protein UL36; Provisional
274-583 5.18e-05

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 47.24  E-value: 5.18e-05
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  274 PAAGGLKASPPTPLnLSAGGLTP---TNGSVAPPTPTDPSKTPVPHNPGTPNALPPPMQPPASISPR----PASSDQSNK 346
Cdd:PHA03247  2702 PPPPPTPEPAPHAL-VSATPLPPgpaAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPapapPAAPAAGPP 2780
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  347 PSLLLPGGGRLDMNRRVSLAGGDVASVEHWVrqrkqqmghTPPQASVSASNSPmglaaaarrnSQPYPTqiitshipddP 426
Cdd:PHA03247  2781 RRLTRPAVASLSESRESLPSPWDPADPPAAV---------LAPAAALPPAASP----------AGPLPP----------P 2831
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  427 NAAALSRSALPSPKVSPNGRMPGALlftamrnntirrasMPGGaqlisTTAFTPPRVPSFNHPVSSSQPQSRILARelsP 506
Cdd:PHA03247  2832 TSAQPTAPPPPPGPPPPSLPLGGSV--------------APGG-----DVRRRPPSRSPAAKPAAPARPPVRRLAR---P 2889
                          250       260       270       280       290       300       310
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1534522932  507 IKDQDTEIDPsLRGGVPMTYVTPPPSAYPSDGSYLSVPSSTESAfmySLNPGLPFAPNSPLPNPSFSFGGTPTSDVP 583
Cdd:PHA03247  2890 AVSRSTESFA-LPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPP---PPPPPRPQPPLAPTTDPAGAGEPSGAVPQP 2962
PRK12323 PRK12323
DNA polymerase III subunit gamma/tau;
274-525 5.96e-04

DNA polymerase III subunit gamma/tau;


Pssm-ID: 237057 [Multi-domain]  Cd Length: 700  Bit Score: 43.71  E-value: 5.96e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932 274 PAAGGLKASPPTPlnlsaggltpTNGSVAPPTPTDPSKTPVPHNPGTPNALPPPMQPPASISPRPASSDQSNKPSLLLPG 353
Cdd:PRK12323  365 PGQSGGGAGPATA----------AAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALA 434
                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932 354 GGRLDMNRRVSLAGGDVASvehwvrqrkqqMGHTPPQASVSASNSPMGLAAAARRNSQPYPTQIITSHIPDDPNAAALSR 433
Cdd:PRK12323  435 AARQASARGPGGAPAPAPA-----------PAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELP 503
                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932 434 SALPSPKVSPNGRMPGALLFTAMRNNTIRRASMPGGAQLISTTAFTPPRVPSFNHPVSSSQPqSRILARELSPIKDQDTe 513
Cdd:PRK12323  504 PEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRP-PRASASGLPDMFDGDW- 581
                         250
                  ....*....|..
gi 1534522932 514 idPSLRGGVPMT 525
Cdd:PRK12323  582 --PALAARLPVR 591
PHA03247 PHA03247
large tegument protein UL36; Provisional
283-585 3.45e-03

large tegument protein UL36; Provisional


Pssm-ID: 223021 [Multi-domain]  Cd Length: 3151  Bit Score: 41.46  E-value: 3.45e-03
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  283 PPTPLNLSAGGLTPTNGSV------APPTPTDPSKTPVPHNPgTPNALPPPM------------------QPPASISPRP 338
Cdd:PHA03247  2483 PAEARFPFAAGAAPDPGGGgppdpdAPPAPSRLAPAILPDEP-VGEPVHPRMltwirgleelasddagdpPPPLPPAAPP 2561
                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  339 ASSDQSNKPSLLL--PGGGRLDMNRRVSLAGGDVASVEHWVRQRKQQMGHTPPQASVSASNS--PMGLAAAARRNSQPYP 414
Cdd:PHA03247  2562 AAPDRSVPPPRPAprPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHApdPPPPSPSPAANEPDPH 2641
                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  415 TQIITSHIPDDPNAAALSRSALPSpKVSPNGRMPGAllfTAMRNNTIRRASMPGGAQLISTTAFTPPRVPSFNHPVSSSQ 494
Cdd:PHA03247  2642 PPPTVPPPERPRDDPAPGRVSRPR-RARRLGRAAQA---SSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717
                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1534522932  495 ----PQSRILARELSPIKDQDTEIDPSLRG----GVPMTYVTP-----PPSAYPSDGSYLSVPSSTESAFMYSLNPGLPF 561
Cdd:PHA03247  2718 atplPPGPAAARQASPALPAAPAPPAVPAGpatpGGPARPARPpttagPPAPAPPAAPAAGPPRRLTRPAVASLSESRES 2797
                          330       340
                   ....*....|....*....|....
gi 1534522932  562 APNSPLPNPSFSFGGTPTSDVPAA 585
Cdd:PHA03247  2798 LPSPWDPADPPAAVLAPAAALPPA 2821
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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