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Conserved domains on  [gi|1562687273|gb|RXI24587|]
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MAG: hypothetical protein C7K11_00390 [Candidatus Amulumruptor caecigallinarius]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
LPP20 super family cl15824
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 16-94 7.18e-03

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


The actual alignment was detected with superfamily member pfam02169:

Pssm-ID: 472834  Cd Length: 96  Bit Score: 36.26  E-value: 7.18e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1562687273  16 RYWSAEGHGTTIDEADKDALGQISRQIAISILSKSDDTHIGQGGQDYYVQESTIKAYSFASLQNVSMIVLEPEPNARVF 94
Cdd:pfam02169  12 RYLLGVGSAKSLRAAAADALRDIAAQLSVTVVSSSSTQETRGAVQTLITTSSSVRQRVDSVLRGTRIVETWELPSGRYY 90
 
Name Accession Description Interval E-value
LPP20 pfam02169
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 16-94 7.18e-03

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


Pssm-ID: 426634  Cd Length: 96  Bit Score: 36.26  E-value: 7.18e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1562687273  16 RYWSAEGHGTTIDEADKDALGQISRQIAISILSKSDDTHIGQGGQDYYVQESTIKAYSFASLQNVSMIVLEPEPNARVF 94
Cdd:pfam02169  12 RYLLGVGSAKSLRAAAADALRDIAAQLSVTVVSSSSTQETRGAVQTLITTSSSVRQRVDSVLRGTRIVETWELPSGRYY 90
 
Name Accession Description Interval E-value
LPP20 pfam02169
LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class ...
 16-94 7.18e-03

LPP20 lipoprotein; This family contains the LPP20 lipoprotein, which is a non-essential class of lipoprotein.


Pssm-ID: 426634  Cd Length: 96  Bit Score: 36.26  E-value: 7.18e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1562687273  16 RYWSAEGHGTTIDEADKDALGQISRQIAISILSKSDDTHIGQGGQDYYVQESTIKAYSFASLQNVSMIVLEPEPNARVF 94
Cdd:pfam02169  12 RYLLGVGSAKSLRAAAADALRDIAAQLSVTVVSSSSTQETRGAVQTLITTSSSVRQRVDSVLRGTRIVETWELPSGRYY 90
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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