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Conserved domains on  [gi|1079631846|emb|SCW41354|]
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hypothetical protein SAMN02910456_01011 [Ruminococcaceae bacterium YRB3002]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF3574 super family cl13525
Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. ...
 57-117 1.17e-04

Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.


The actual alignment was detected with superfamily member pfam12098:

Pssm-ID: 432329  Cd Length: 103  Bit Score: 39.11  E-value: 1.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079631846  57 QYVLYVGTNDKDTyAPKYTQEEAKTIVDQVCLKYF-EGYTLQEAIGSWTDETGTPTHEYTIV 117
Cdd:pfam12098   1 RTELYFGLSRPDG-GGQVSEAEWQRFLDEEVTPRFpDGLTVLDAYGQWRDSTGQLIRERSKV 61
 
Name Accession Description Interval E-value
DUF3574 pfam12098
Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. ...
 57-117 1.17e-04

Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.


Pssm-ID: 432329  Cd Length: 103  Bit Score: 39.11  E-value: 1.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079631846  57 QYVLYVGTNDKDTyAPKYTQEEAKTIVDQVCLKYF-EGYTLQEAIGSWTDETGTPTHEYTIV 117
Cdd:pfam12098   1 RTELYFGLSRPDG-GGQVSEAEWQRFLDEEVTPRFpDGLTVLDAYGQWRDSTGQLIRERSKV 61
 
Name Accession Description Interval E-value
DUF3574 pfam12098
Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. ...
 57-117 1.17e-04

Protein of unknown function (DUF3574); This family of proteins is functionally uncharacterized. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.


Pssm-ID: 432329  Cd Length: 103  Bit Score: 39.11  E-value: 1.17e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1079631846  57 QYVLYVGTNDKDTyAPKYTQEEAKTIVDQVCLKYF-EGYTLQEAIGSWTDETGTPTHEYTIV 117
Cdd:pfam12098   1 RTELYFGLSRPDG-GGQVSEAEWQRFLDEEVTPRFpDGLTVLDAYGQWRDSTGQLIRERSKV 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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