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Conserved domains on  [gi|1079631849|emb|SCW41403|]
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hypothetical protein SAMN02910456_01014 [Ruminococcaceae bacterium YRB3002]

Protein Classification

RPC10 family protein( domain architecture ID 10005088)

RPC10 family protein

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 70-102 3.72e-06

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


:

Pssm-ID: 441599  Cd Length: 48  Bit Score: 43.54  E-value: 3.72e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1079631849  70 KTRVIQCGNCGAETVNDALQMSGRCPFCGSTIV 102
Cdd:COG1996     2 AMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIF 34
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 8-44 2.65e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


:

Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.14  E-value: 2.65e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1079631849   8 EASAEKKCPSCGGILLFDPGWDRLVCQSCGNKFDIPE 44
Cdd:COG1996     1 EAMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIFIKE 37
 
Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 70-102 3.72e-06

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 43.54  E-value: 3.72e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1079631849  70 KTRVIQCGNCGAETVNDALQMSGRCPFCGSTIV 102
Cdd:COG1996     2 AMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIF 34
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 8-44 2.65e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.14  E-value: 2.65e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1079631849   8 EASAEKKCPSCGGILLFDPGWDRLVCQSCGNKFDIPE 44
Cdd:COG1996     1 EAMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIFIKE 37
 
Name Accession Description Interval E-value
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 70-102 3.72e-06

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 43.54  E-value: 3.72e-06
                          10        20        30
                  ....*....|....*....|....*....|...
gi 1079631849  70 KTRVIQCGNCGAETVNDALQMSGRCPFCGSTIV 102
Cdd:COG1996     2 AMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIF 34
RPC10 COG1996
DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; ...
 8-44 2.65e-04

DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger [Transcription]; DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441599  Cd Length: 48  Bit Score: 38.14  E-value: 2.65e-04
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 1079631849   8 EASAEKKCPSCGGILLFDPGWDRLVCQSCGNKFDIPE 44
Cdd:COG1996     1 EAMVEYKCPRCGAEVELDEGTPAIRCPYCGSRIFIKE 37
RPB9 COG1594
DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]; ...
 15-80 1.36e-03

DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS is part of the Pathway/BioSystem: RNA polymerase


Pssm-ID: 441202 [Multi-domain]  Cd Length: 103  Bit Score: 37.62  E-value: 1.36e-03
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1079631849  15 CPSCGGILLFDPGWdrLVCQSCGNKFDIPELQSDEAAEEIDIATAKSIASHDWGI----KTRVIqCGNCG 80
Cdd:COG1594     3 CPKCGSMMKPKDGV--LVCPKCGYEEPRDEEAEAKYVSTEEQEDKEIIVVEEEEVeglpTTKVI-CPKCG 69
Trm112 COG2835
RNA methyltransferase activator Trm112/YbaR [Translation, ribosomal structure and biogenesis];
15-50 1.46e-03

RNA methyltransferase activator Trm112/YbaR [Translation, ribosomal structure and biogenesis];


Pssm-ID: 442083 [Multi-domain]  Cd Length: 60  Bit Score: 36.40  E-value: 1.46e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|
gi 1079631849  15 CPSCGGILLFDPGWDRLVCQSCGNKF----DIPELQSDEA 50
Cdd:COG2835    11 CPVCKGPLELDKEEGELVCTACGLAYpirdGIPVLLPDEA 50
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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