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Conserved domains on  [gi|1079631667|emb|SCW44162|]
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Coenzyme PQQ synthesis protein D (PqqD) [Ruminococcaceae bacterium YRB3002]

Protein Classification

PqqD family protein( domain architecture ID 10526818)

PqqD family protein such as pyrroloquinoline quinone biosynthesis protein PqqD, which may serve as a PQQ carrier

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 33-85 1.06e-12

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


:

Pssm-ID: 461641  Cd Length: 65  Bit Score: 57.10  E-value: 1.06e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1079631667 33 MLNDTGAFIFEKLQKGAAPEETANALTQEYDVSLETASTDVQNTINSLIEAGV 85
Cdd:pfam05402 12 SLNETGAFIWELLDGRTTVEEIVAALAEEYDVDEEEAEADVEAFLEQLREAGL 64
 
Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 33-85 1.06e-12

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 57.10  E-value: 1.06e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1079631667 33 MLNDTGAFIFEKLQKGAAPEETANALTQEYDVSLETASTDVQNTINSLIEAGV 85
Cdd:pfam05402 12 SLNETGAFIWELLDGRTTVEEIVAALAEEYDVDEEEAEADVEAFLEQLREAGL 64
lasso_PqqD_Strm NF033530
lasso peptide biosynthesis PqqD family chaperone; Members of this family are homologs of PqqD, ...
 33-86 1.36e-10

lasso peptide biosynthesis PqqD family chaperone; Members of this family are homologs of PqqD, a chaperone that binds RiPP peptide precursors for their modification into bioactive natural products. By context, this set is involved in the biosynthesis of threaded-lasso peptides. This model focuses on lasso peptide systems from Actinobacteria. Similar systems, with different subfamilies of PqqD-related peptides, occur in lasso peptide systems in other lineages. A characterized example is LarB1 from the lariatin system of Rhodococcus jostii.


Pssm-ID: 468063  Cd Length: 78  Bit Score: 52.18  E-value: 1.36e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1079631667 33 MLNDTGAFIFEKLQKGAAPEETANALTQEYDVSLETASTDVQNTINSLIEAGVA 86
Cdd:NF033530  25 QLNPTGALVLRTLLDGGTPDQAAAALTARYDVDAARARADVRALVASLRAAGLV 78
 
Name Accession Description Interval E-value
PqqD pfam05402
Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ ...
 33-85 1.06e-12

Coenzyme PQQ synthesis protein D (PqqD); This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.


Pssm-ID: 461641  Cd Length: 65  Bit Score: 57.10  E-value: 1.06e-12
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|...
gi 1079631667 33 MLNDTGAFIFEKLQKGAAPEETANALTQEYDVSLETASTDVQNTINSLIEAGV 85
Cdd:pfam05402 12 SLNETGAFIWELLDGRTTVEEIVAALAEEYDVDEEEAEADVEAFLEQLREAGL 64
lasso_PqqD_Strm NF033530
lasso peptide biosynthesis PqqD family chaperone; Members of this family are homologs of PqqD, ...
 33-86 1.36e-10

lasso peptide biosynthesis PqqD family chaperone; Members of this family are homologs of PqqD, a chaperone that binds RiPP peptide precursors for their modification into bioactive natural products. By context, this set is involved in the biosynthesis of threaded-lasso peptides. This model focuses on lasso peptide systems from Actinobacteria. Similar systems, with different subfamilies of PqqD-related peptides, occur in lasso peptide systems in other lineages. A characterized example is LarB1 from the lariatin system of Rhodococcus jostii.


Pssm-ID: 468063  Cd Length: 78  Bit Score: 52.18  E-value: 1.36e-10
                         10        20        30        40        50
                 ....*....|....*....|....*....|....*....|....*....|....
gi 1079631667 33 MLNDTGAFIFEKLQKGAAPEETANALTQEYDVSLETASTDVQNTINSLIEAGVA 86
Cdd:NF033530  25 QLNPTGALVLRTLLDGGTPDQAAAALTARYDVDAARARADVRALVASLRAAGLV 78
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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