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Conserved domains on  [gi|1591620530|emb|SLM26670|]
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KIAA0398 protein, partial [Graptemys gibbonsi]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
AdoMet_MTases super family cl17173
S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; ...
 1-16 8.65e-05

S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).


The actual alignment was detected with superfamily member pfam03291:

Pssm-ID: 473071 [Multi-domain]  Cd Length: 332  Bit Score: 35.48  E-value: 8.65e-05
                          10
                  ....*....|....*.
gi 1591620530   1 CPGGYFIGTTPNSFEL 16
Cdd:pfam03291 176 ASGGVFIGTTPDSDFI 191
 
Name Accession Description Interval E-value
Pox_MCEL pfam03291
mRNA capping enzyme; This family of enzymes are related to pfam03919.
 1-16 8.65e-05

mRNA capping enzyme; This family of enzymes are related to pfam03919.


Pssm-ID: 281307 [Multi-domain]  Cd Length: 332  Bit Score: 35.48  E-value: 8.65e-05
                          10
                  ....*....|....*.
gi 1591620530   1 CPGGYFIGTTPNSFEL 16
Cdd:pfam03291 176 ASGGVFIGTTPDSDFI 191
 
Name Accession Description Interval E-value
Pox_MCEL pfam03291
mRNA capping enzyme; This family of enzymes are related to pfam03919.
 1-16 8.65e-05

mRNA capping enzyme; This family of enzymes are related to pfam03919.


Pssm-ID: 281307 [Multi-domain]  Cd Length: 332  Bit Score: 35.48  E-value: 8.65e-05
                          10
                  ....*....|....*.
gi 1591620530   1 CPGGYFIGTTPNSFEL 16
Cdd:pfam03291 176 ASGGVFIGTTPDSDFI 191
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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