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Conserved domains on  [gi|1439168093|emb|STO09946|]
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DoxX [Flavobacterium hibernum]

Protein Classification

DoxX family protein( domain architecture ID 10006227)

DoxX family protein, an inner membrane protein, similar to Bacillus subtilis putative oxidoreductases MhqP and CatD, and Escherichia coli inner membrane proteins YphA and YqjF

Gene Ontology:  GO:0005886
PubMed:  15306018|26067605

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
10-102 3.74e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


:

Pssm-ID: 441860  Cd Length: 134  Bit Score: 51.75  E-value: 3.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439168093  10 RLFVGVLFIISGLIKLNDPVGFsyklAEYFSEpvFNMPFLEPLAlglaIFLVILEVVLGVMLLVGYKSKLtiWALLLLIv 89
Cdd:COG2259    15 RLLLGLLFLAHGLQKLFGFDGT----AGFFAS--LGLPLPALLA----YLAGLAELVGGLLLILGLFTRL--AALLLAG- 81

                          90
                  ....*....|...
gi 1439168093  90 fFTFLTFYSAYFD 102
Cdd:COG2259    82 -FMLVAIFVVHLP 93
 
Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
10-102 3.74e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 51.75  E-value: 3.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439168093  10 RLFVGVLFIISGLIKLNDPVGFsyklAEYFSEpvFNMPFLEPLAlglaIFLVILEVVLGVMLLVGYKSKLtiWALLLLIv 89
Cdd:COG2259    15 RLLLGLLFLAHGLQKLFGFDGT----AGFFAS--LGLPLPALLA----YLAGLAELVGGLLLILGLFTRL--AALLLAG- 81

                          90
                  ....*....|...
gi 1439168093  90 fFTFLTFYSAYFD 102
Cdd:COG2259    82 -FMLVAIFVVHLP 93
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 10-94 2.47e-06

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 44.86  E-value: 2.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439168093  10 RLFVGVLFIISGLIKLNDpvGFSYkLAEYFsepvFNMPFLEPLALglAIFLVILEVVLGVMLLVGYKSKLTIWALLLLIV 89
Cdd:pfam07681   6 RLALGVLFIAHGLQKLFG--GFAG-TAGYF----ASLGLPPPALL--AYLAILAELVGGLLLLLGLLTRLAALLLAVFML 76


                  ....*
gi 1439168093  90 FFTFL 94
Cdd:pfam07681  77 VAIFL 81
 
Name Accession Description Interval E-value
DoxX COG2259
Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];
10-102 3.74e-08

Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown];


Pssm-ID: 441860  Cd Length: 134  Bit Score: 51.75  E-value: 3.74e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439168093  10 RLFVGVLFIISGLIKLNDPVGFsyklAEYFSEpvFNMPFLEPLAlglaIFLVILEVVLGVMLLVGYKSKLtiWALLLLIv 89
Cdd:COG2259    15 RLLLGLLFLAHGLQKLFGFDGT----AGFFAS--LGLPLPALLA----YLAGLAELVGGLLLILGLFTRL--AALLLAG- 81

                          90
                  ....*....|...
gi 1439168093  90 fFTFLTFYSAYFD 102
Cdd:COG2259    82 -FMLVAIFVVHLP 93
DoxX pfam07681
DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function ...
 10-94 2.47e-06

DoxX; These proteins appear to have some sequence similarity with pfam04173 but their function is unknown.


Pssm-ID: 429591  Cd Length: 84  Bit Score: 44.86  E-value: 2.47e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1439168093  10 RLFVGVLFIISGLIKLNDpvGFSYkLAEYFsepvFNMPFLEPLALglAIFLVILEVVLGVMLLVGYKSKLTIWALLLLIV 89
Cdd:pfam07681   6 RLALGVLFIAHGLQKLFG--GFAG-TAGYF----ASLGLPPPALL--AYLAILAELVGGLLLLLGLLTRLAALLLAVFML 76


                  ....*
gi 1439168093  90 FFTFL 94
Cdd:pfam07681  77 VAIFL 81
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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