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Conserved domains on  [gi|2106371130|gb|UBY47717|]
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Ycf1 protein (chloroplast) [Fagus sylvatica]

Protein Classification

TIC214/Ycf1 family protein( domain architecture ID 11414143)

TIC214/ycf1 family protein is a component of the chloroplast inner membrane protein translocon and forms a 1-MD complex together with Tic100, Tic56, and Tic20-I

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1889 0e+00

Ycf1; Provisional


:

Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2824.69  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130    8 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVI---EEGIEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   85 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKI 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  165 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQKNSIRSN------KYLVSELINSMARIFSILLFITCVYYLGRVPSPIVTK 238
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNvlirsnKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  239 KLKETSETEERGESEEETDVEIETTSETKGTKQEQEEYTEEDPSPSLFSEEKEDPDKIDETEEIRMNGKEKTKDEFhfke 318
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKDL---- 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  319 tryknrpiyetsyldgnqenskleifkeikdkerFWFEKPLVTILFDYKRFHRPFRYIKNDRFENSVKNEMSQSFFHTCK 398
Cdd:CHL00204   317 ----------------------------------FWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQ 362

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  399 SDGKERISFTHPPSLSTFLKIIERKMSLFTIKRISYNELYNHWSYANEQKKNNISKKFIHRIETYDKRFLALEVLEKRIR 478
Cdd:CHL00204   363 SDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTR 442

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  479 LCNNETKKEYFPTISDPLLNGPYRGQIKKFFLFSIL-KTSVKNCMETIGVNKIHGILLTK-NYPEFDRNVDLFDRKPLST 556
Cdd:CHL00204   443 LCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIInETSIKNNIEGVWINKIHGILLNNtDYQEFEQKIDTFNKKSLST 522

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  557 EIGYLLNIISKVAGKSISNLNGKGLSLFPENKQVRIYSEDRIKILNFLFDQVITDLKDKTIRQKDIGIKEITKEVPQWSY 636
Cdd:CHL00204   523 EINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPRWSY 602

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  637 KLIDELEQQEGEKEENVVQDHEIRSRKSKRVVIFTDTPQNTDPYTNTKDTDNPDKADEVALIRYSQQSDFRRDIIKGSIR 716
Cdd:CHL00204   603 KLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  717 AQRRKTVIWELFEANVHSPLFLDRLDNPLFFSFDIPELMKIIFINLIWKKKEFKISGYTEEKKKESEKTEEDKSEKYKRE 796
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  797 EKVRIEIGEAWDSIIFAQVIRGSLLVIQSILRKYILLPSLIIAKNMVRILLFQFPECYEDLKDWKKEMHVKCTYNGVQLS 876
Cdd:CHL00204   763 EKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLS 842

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  877 EKEFPKNWLTDGIQIKILFPFRLKPWHRSKLRSPHKDQIKKNgKGQKNDFCFLTVWGMEAELPFGSPRNRFSIFEPVFKG 956
Cdd:CHL00204   843 ETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKKK-KKKKNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKE 921

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  957 LEKKKLKLKKKLFLVLRVLKEKTKFFLNVAKETKKGVIKVILFLKKIKKELSKRN--LLFGLKKIdlYELSQTKKEKNSI 1034
Cdd:CHL00204   922 LKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNpiLLFGLREI--YELNETKKEKDSI 999

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1035 IHNRMIQESSIKIRSMDWSTSSLTEKKMKDLVNRTNTIINKIEKMKKDKKRgfITPEININPNKLSYEDKGLESPKNIWQ 1114
Cdd:CHL00204  1000 ISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKK--ITNTINISPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1115 ILKRKNLRLLRKSHFFVKFFIEKLYIDTFLCIINIPRINAQLFLELTKKMINKYIYNNEANRERIDKTNQSIINFCSTIK 1194
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIK 1157

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1195 KSRCII---NKNSKIFGDLAYLSQAYVFYKLSQTQVSNLDKLRSVFKYYGTYFFLKNEIKEYFvGTQGIFDSELRHKNPR 1271
Cdd:CHL00204  1158 KSLYNIsnkNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYF-EAQGIFHSKLKHKNLL 1236

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1272 NFRINELKNWLRGHyqYQYDLSQLKWSRLVPQKWRTRVNQCRMTKNENFNKCDSyeYEKNRFIHYEKEKYFEIASLPNQK 1351
Cdd:CHL00204  1237 NSGMNQWKNWLRSH--YQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDS--YEKDRLIHYKKQNDFEANSLLNQK 1312

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1352 ENLTKQYGYDRVSYKSINYETKKdsyiyrlpLQVNNNQEISYNYNTTKHKFFDMMGGILIKNYLVEDDSIDIEKNSDRKF 1431
Cdd:CHL00204  1313 DNFKKDYRYDLLSYKSINYEDKK--------FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKY 1384

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1432 FDWKILNFCLRKKIDIKAWADIDTVRNKNTKTGFNYYQIIDKMDkkglfyltiHQDQKMNPSNQKVFFFDWMGMNEEILS 1511
Cdd:CHL00204  1385 LDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---------HQDFENNQANKKKNFFDWMGMNEEILN 1455

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1512 NPISNLELWFFPEFPILYNTYKIQPWGIPIKLLFFNFNGNENVNkhKSITGNQKRdiFILSNEK-TLELENRNQVEKEFA 1590
Cdd:CHL00204  1456 RPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVN--KKINQKKKG--FIPSNEKkSIEIENRNQEEKEPA 1531

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1591 DQAD----------PESALSNKDKDVEQDSRGSYMkkQKRRNKKQYKNNTEGELELLLKRYLRFQLRWDYSFNQRIINNI 1660
Cdd:CHL00204  1532 GQGElesdkekkgnLESVLSNQEKNIEEDYAESDI--KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNI 1609

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1661 KVYCLLLRLINPTEIAISAIQREEMSLDILMVHKDLTLTELMKRGIFIIEPVRLSVKTDGQFLLYQIIGISLVPKRKHQI 1740
Cdd:CHL00204  1610 KVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQI 1689

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1741 HQRYLEKggVYVDknKKNFDESIALHEKMNGNRDKNHYDLLVPENILSPRRRRELRIIICFNSSNRIGIHRNIVFCNGNK 1820
Cdd:CHL00204  1690 NQRYREK--KYVD--KKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKN 1765

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2106371130 1821 VKNydCDQVLNKRKNLDRDENKLIKLKFFLWPNYRLEDLSCMNRYWFDTNNGSRFSLVRIQMYPRLKIH 1889
Cdd:CHL00204  1766 VKN--CGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1889 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2824.69  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130    8 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVI---EEGIEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   85 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKI 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  165 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQKNSIRSN------KYLVSELINSMARIFSILLFITCVYYLGRVPSPIVTK 238
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNvlirsnKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  239 KLKETSETEERGESEEETDVEIETTSETKGTKQEQEEYTEEDPSPSLFSEEKEDPDKIDETEEIRMNGKEKTKDEFhfke 318
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKDL---- 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  319 tryknrpiyetsyldgnqenskleifkeikdkerFWFEKPLVTILFDYKRFHRPFRYIKNDRFENSVKNEMSQSFFHTCK 398
Cdd:CHL00204   317 ----------------------------------FWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQ 362

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  399 SDGKERISFTHPPSLSTFLKIIERKMSLFTIKRISYNELYNHWSYANEQKKNNISKKFIHRIETYDKRFLALEVLEKRIR 478
Cdd:CHL00204   363 SDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTR 442

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  479 LCNNETKKEYFPTISDPLLNGPYRGQIKKFFLFSIL-KTSVKNCMETIGVNKIHGILLTK-NYPEFDRNVDLFDRKPLST 556
Cdd:CHL00204   443 LCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIInETSIKNNIEGVWINKIHGILLNNtDYQEFEQKIDTFNKKSLST 522

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  557 EIGYLLNIISKVAGKSISNLNGKGLSLFPENKQVRIYSEDRIKILNFLFDQVITDLKDKTIRQKDIGIKEITKEVPQWSY 636
Cdd:CHL00204   523 EINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPRWSY 602

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  637 KLIDELEQQEGEKEENVVQDHEIRSRKSKRVVIFTDTPQNTDPYTNTKDTDNPDKADEVALIRYSQQSDFRRDIIKGSIR 716
Cdd:CHL00204   603 KLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  717 AQRRKTVIWELFEANVHSPLFLDRLDNPLFFSFDIPELMKIIFINLIWKKKEFKISGYTEEKKKESEKTEEDKSEKYKRE 796
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  797 EKVRIEIGEAWDSIIFAQVIRGSLLVIQSILRKYILLPSLIIAKNMVRILLFQFPECYEDLKDWKKEMHVKCTYNGVQLS 876
Cdd:CHL00204   763 EKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLS 842

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  877 EKEFPKNWLTDGIQIKILFPFRLKPWHRSKLRSPHKDQIKKNgKGQKNDFCFLTVWGMEAELPFGSPRNRFSIFEPVFKG 956
Cdd:CHL00204   843 ETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKKK-KKKKNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKE 921

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  957 LEKKKLKLKKKLFLVLRVLKEKTKFFLNVAKETKKGVIKVILFLKKIKKELSKRN--LLFGLKKIdlYELSQTKKEKNSI 1034
Cdd:CHL00204   922 LKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNpiLLFGLREI--YELNETKKEKDSI 999

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1035 IHNRMIQESSIKIRSMDWSTSSLTEKKMKDLVNRTNTIINKIEKMKKDKKRgfITPEININPNKLSYEDKGLESPKNIWQ 1114
Cdd:CHL00204  1000 ISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKK--ITNTINISPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1115 ILKRKNLRLLRKSHFFVKFFIEKLYIDTFLCIINIPRINAQLFLELTKKMINKYIYNNEANRERIDKTNQSIINFCSTIK 1194
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIK 1157

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1195 KSRCII---NKNSKIFGDLAYLSQAYVFYKLSQTQVSNLDKLRSVFKYYGTYFFLKNEIKEYFvGTQGIFDSELRHKNPR 1271
Cdd:CHL00204  1158 KSLYNIsnkNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYF-EAQGIFHSKLKHKNLL 1236

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1272 NFRINELKNWLRGHyqYQYDLSQLKWSRLVPQKWRTRVNQCRMTKNENFNKCDSyeYEKNRFIHYEKEKYFEIASLPNQK 1351
Cdd:CHL00204  1237 NSGMNQWKNWLRSH--YQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDS--YEKDRLIHYKKQNDFEANSLLNQK 1312

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1352 ENLTKQYGYDRVSYKSINYETKKdsyiyrlpLQVNNNQEISYNYNTTKHKFFDMMGGILIKNYLVEDDSIDIEKNSDRKF 1431
Cdd:CHL00204  1313 DNFKKDYRYDLLSYKSINYEDKK--------FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKY 1384

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1432 FDWKILNFCLRKKIDIKAWADIDTVRNKNTKTGFNYYQIIDKMDkkglfyltiHQDQKMNPSNQKVFFFDWMGMNEEILS 1511
Cdd:CHL00204  1385 LDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---------HQDFENNQANKKKNFFDWMGMNEEILN 1455

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1512 NPISNLELWFFPEFPILYNTYKIQPWGIPIKLLFFNFNGNENVNkhKSITGNQKRdiFILSNEK-TLELENRNQVEKEFA 1590
Cdd:CHL00204  1456 RPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVN--KKINQKKKG--FIPSNEKkSIEIENRNQEEKEPA 1531

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1591 DQAD----------PESALSNKDKDVEQDSRGSYMkkQKRRNKKQYKNNTEGELELLLKRYLRFQLRWDYSFNQRIINNI 1660
Cdd:CHL00204  1532 GQGElesdkekkgnLESVLSNQEKNIEEDYAESDI--KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNI 1609

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1661 KVYCLLLRLINPTEIAISAIQREEMSLDILMVHKDLTLTELMKRGIFIIEPVRLSVKTDGQFLLYQIIGISLVPKRKHQI 1740
Cdd:CHL00204  1610 KVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQI 1689

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1741 HQRYLEKggVYVDknKKNFDESIALHEKMNGNRDKNHYDLLVPENILSPRRRRELRIIICFNSSNRIGIHRNIVFCNGNK 1820
Cdd:CHL00204  1690 NQRYREK--KYVD--KKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKN 1765

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2106371130 1821 VKNydCDQVLNKRKNLDRDENKLIKLKFFLWPNYRLEDLSCMNRYWFDTNNGSRFSLVRIQMYPRLKIH 1889
Cdd:CHL00204  1766 VKN--CGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-954 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1527.14  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   22 VVVVGLYYGFLTTFSIGPSYLFLLRARVI---EEGIEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   99 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKILFVTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  179 ILFMKWVGLVLVWIQQKNSIRSN------KYLVSELINSMARIFSILLFITCVYYLGRVPSPIVTKKLKETSETEERGES 252
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNvlirsnKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERYES 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  253 EEETDVEIETTSETKGTKQEQEEYTEEDPSPSLFSEEKEDPDKIDETEEIRMNGKEKTKDE--FHFKETRYKNRPIYETS 330
Cdd:pfam05758  241 EEETDVEIETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEIRVNGKDKIKDEfhFHFRETCYKNSPIYETS 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  331 YLDGNQENSKLEIFKEIKD-KERFWFEKPLVTILFDYKRFHRPFRYIKNDRFENSVKNEMSQSFFHTCKSDGKERISFTH 409
Cdd:pfam05758  321 YLDGNQENSKLEILKEKKKnKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFTY 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  410 PPSLSTFLKIIERKMSLFTIKRISYNELYNHWSYANEQKKNNISKKFIHRIETYDKRFLALEVLEKRIRLCNNETKKEYF 489
Cdd:pfam05758  401 PPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEYL 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  490 PTISDPLLNGPYRGQIKKFFLFSIL-KTSVKNCMETIGVNKIHGILLTKNYPEFDRNVDLFDRKPLSTEIGYLLNIISKV 568
Cdd:pfam05758  481 PKIYDPFLNGPYRGRIKKVFSPSIInKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEIDYFLNLINEF 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  569 AGKSISNLNGKGLSLFPENKQVRIYSEDRIKILNFLFDQVITDLKDKTIRQKDIGIKEITKEVPQWSYKLIDELEQQEGE 648
Cdd:pfam05758  561 SKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQLEGE 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  649 KEENVVQDHEIRSRKSKRVVIFTDTPQNTDPYTNTKDTDNPDKADEVALIRYSQQSDFRRDIIKGSIRAQRRKTVIWELF 728
Cdd:pfam05758  641 NEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELF 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  729 EANVHSPLFLDRLDNPLFFSFDIPELMKIIFINLIWKKKEFKISGYTEEKKKESEKTEEDKSEKYKREEKVRIEIGEAWD 808
Cdd:pfam05758  721 QANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKESSKKEEDKKEDNKREERARIEIAEAWD 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  809 SIIFAQVIRGSLLVIQSILRKYILLPSLIIAKNMVRILLFQFPECYEDLKDWKKEMHVKCTYNGVQLSEKEFPKNWLTDG 888
Cdd:pfam05758  801 SILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNWLTDG 880

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2106371130  889 IQIKILFPFRLKPWHRSKLRSPHKDQIKKngKGQKNDFCFLTVWGMEAELPFGSPRNRFSIFEPVF 954
Cdd:pfam05758  881 IQIKILFPFRLKPWHKSKLRSSEKDLMKK--KVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Name Accession Description Interval E-value
ycf1 CHL00204
Ycf1; Provisional
 8-1889 0e+00

Ycf1; Provisional


Pssm-ID: 214395 [Multi-domain]  Cd Length: 1832  Bit Score: 2824.69  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130    8 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVI---EEGIEKKVSATTGFITGQLMMFISIYYAPLHLAL 84
Cdd:CHL00204     1 LGNLVSLCMKIINSVVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLAL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   85 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKI 164
Cdd:CHL00204    81 GRPHTITVLALPYLLFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKM 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  165 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQKNSIRSN------KYLVSELINSMARIFSILLFITCVYYLGRVPSPIVTK 238
Cdd:CHL00204   161 LFVTSSFVGWLIGHILFMKWVGLVLVWIQQNNSIRSNvlirsnKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTK 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  239 KLKETSETEERGESEEETDVEIETTSETKGTKQEQEEYTEEDPSPSLFSEEKEDPDKIDETEEIRMNGKEKTKDEFhfke 318
Cdd:CHL00204   241 KLKETSETEERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGKEKIKKDL---- 316

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  319 tryknrpiyetsyldgnqenskleifkeikdkerFWFEKPLVTILFDYKRFHRPFRYIKNDRFENSVKNEMSQSFFHTCK 398
Cdd:CHL00204   317 ----------------------------------FWFEKPLVTLLFDYKRWNRPFRYIKNDRFENAVRNEMSQYFFYTCQ 362

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  399 SDGKERISFTHPPSLSTFLKIIERKMSLFTIKRISYNELYNHWSYANEQKKNNISKKFIHRIETYDKRFLALEVLEKRIR 478
Cdd:CHL00204   363 SDGKERISFTYPPSLSTFWEMIQRKIPLFTLEKLSSDELYNQWIYTNEEKKNNLSNEFLNRIEALDKESSSLNILEKRTR 442

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  479 LCNNETKKEYFPTISDPLLNGPYRGQIKKFFLFSIL-KTSVKNCMETIGVNKIHGILLTK-NYPEFDRNVDLFDRKPLST 556
Cdd:CHL00204   443 LCNDETKKEYLPKIYDPFLNGPYRGRIKKLFSPSIInETSIKNNIEGVWINKIHGILLNNtDYQEFEQKIDTFNKKSLST 522

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  557 EIGYLLNIISKVAGKSISNLNGKGLSLFPENKQVRIYSEDRIKILNFLFDQVITDLKDKTIRQKDIGIKEITKEVPQWSY 636
Cdd:CHL00204   523 EINESLTLINKFGAEPKSSLNLKGLSLFSEPEQEKINSEEEIKIFKFLFDAVITDPNDQTIIKKSIGIKEISKKVPRWSY 602

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  637 KLIDELEQQEGEKEENVVQDHEIRSRKSKRVVIFTDTPQNTDPYTNTKDTDNPDKADEVALIRYSQQSDFRRDIIKGSIR 716
Cdd:CHL00204   603 KLIDELEQLEGENEENVPSDHQIRSRKAKRVVIFTDNESNNDIYTNLKDNQNSDQKDEVALIRYSQQSDFRRGIIKGSMR 682

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  717 AQRRKTVIWELFEANVHSPLFLDRLDNPLFFSFDIPELMKIIFINLIWKKKEFKISGYTEEKKKESEKTEEDKSEKYKRE 796
Cdd:CHL00204   683 AQRRKTVIWELFQANVHSPLFLDRIDKLFFFSFDISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKRE 762

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  797 EKVRIEIGEAWDSIIFAQVIRGSLLVIQSILRKYILLPSLIIAKNMVRILLFQFPECYEDLKDWKKEMHVKCTYNGVQLS 876
Cdd:CHL00204   763 EKARIEIAEAWDSILFAQVIRGSLLVTQSILRKYIILPSLIIIKNIGRMLLFQFPEWSEDLKDWKREMHVKCTYNGVQLS 842

                          890       900       910       920       930       940       950       960
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  877 EKEFPKNWLTDGIQIKILFPFRLKPWHRSKLRSPHKDQIKKNgKGQKNDFCFLTVWGMEAELPFGSPRNRFSIFEPVFKG 956
Cdd:CHL00204   843 ETEFPKNWLTDGIQIKILFPFYLKPWHRSKLRSSHKDRMKKK-KKKKNDFCFLTVWGMETELPFGSPRKRPSFFEPIFKE 921

                          970       980       990      1000      1010      1020      1030      1040
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  957 LEKKKLKLKKKLFLVLRVLKEKTKFFLNVAKETKKGVIKVILFLKKIKKELSKRN--LLFGLKKIdlYELSQTKKEKNSI 1034
Cdd:CHL00204   922 LKKKIRKFKKKYFLVLKILKERTKLFLKVSKETKKWIIKSFLFLKRIIKELSKRNpiLLFGLREI--YELNETKKEKDSI 999

                         1050      1060      1070      1080      1090      1100      1110      1120
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1035 IHNRMIQESSIKIRSMDWSTSSLTEKKMKDLVNRTNTIINKIEKMKKDKKRgfITPEININPNKLSYEDKGLESPKNIWQ 1114
Cdd:CHL00204  1000 ISNQMIHESSVQIRSMEWTNSSLTEKKIKDLTDRTKTIRNQIEKITKEKKK--ITNTINISPNKTSYDSKIIESSKKIWQ 1077

                         1130      1140      1150      1160      1170      1180      1190      1200
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1115 ILKRKNLRLLRKSHFFVKFFIEKLYIDTFLCIINIPRINAQLFLELTKKMINKYIYNNEANRERIDKTNQSIINFCSTIK 1194
Cdd:CHL00204  1078 ILKRRNTRLIRKSYYFIKFFIERIYIDIFLGIINIPRINTQLFLESTKKIIDKYIYKNEENKEKINKKKQNTIHFISTIK 1157

                         1210      1220      1230      1240      1250      1260      1270      1280
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1195 KSRCII---NKNSKIFGDLAYLSQAYVFYKLSQTQVSNLDKLRSVFKYYGTYFFLKNEIKEYFvGTQGIFDSELRHKNPR 1271
Cdd:CHL00204  1158 KSLYNIsnkNKNSKIFYDLSSLSQAYVFYKLSQTQVINLYKLRSVLQYNGTSFFLKNEIKDYF-EAQGIFHSKLKHKNLL 1236

                         1290      1300      1310      1320      1330      1340      1350      1360
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1272 NFRINELKNWLRGHyqYQYDLSQLKWSRLVPQKWRTRVNQCRMTKNENFNKCDSyeYEKNRFIHYEKEKYFEIASLPNQK 1351
Cdd:CHL00204  1237 NSGMNQWKNWLRSH--YQYDLSQIRWSRLVPQKWRNRVNQDRMVQNKDLNKWDS--YEKDRLIHYKKQNDFEANSLLNQK 1312

                         1370      1380      1390      1400      1410      1420      1430      1440
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1352 ENLTKQYGYDRVSYKSINYETKKdsyiyrlpLQVNNNQEISYNYNTTKHKFFDMMGGILIKNYLVEDDSIDIEKNSDRKF 1431
Cdd:CHL00204  1313 DNFKKDYRYDLLSYKSINYEDKK--------FQVNKNQEISYNYNTRKVNLFDMPEGIAINNYLGKGDILDIEKNPDRKY 1384

                         1450      1460      1470      1480      1490      1500      1510      1520
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1432 FDWKILNFCLRKKIDIKAWADIDTVRNKNTKTGFNYYQIIDKMDkkglfyltiHQDQKMNPSNQKVFFFDWMGMNEEILS 1511
Cdd:CHL00204  1385 LDWRILNFSLRKKVDIESWVDTDSKSKKNTKTGVNNYQIIDKID---------HQDFENNQANKKKNFFDWMGMNEEILN 1455

                         1530      1540      1550      1560      1570      1580      1590      1600
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1512 NPISNLELWFFPEFPILYNTYKIQPWGIPIKLLFFNFNGNENVNkhKSITGNQKRdiFILSNEK-TLELENRNQVEKEFA 1590
Cdd:CHL00204  1456 RPISNLEFWFFPEFVLLYNTYKIKPWIIPIKLLLLNLNGNENVN--KKINQKKKG--FIPSNEKkSIEIENRNQEEKEPA 1531

                         1610      1620      1630      1640      1650      1660      1670      1680
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1591 DQAD----------PESALSNKDKDVEQDSRGSYMkkQKRRNKKQYKNNTEGELELLLKRYLRFQLRWDYSFNQRIINNI 1660
Cdd:CHL00204  1532 GQGElesdkekkgnLESVLSNQEKNIEEDYAESDI--KKRKNKKQYKSNTEAELDFFLKRYLRFQLRWNDFLNQRIINNI 1609

                         1690      1700      1710      1720      1730      1740      1750      1760
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1661 KVYCLLLRLINPTEIAISAIQREEMSLDILMVHKDLTLTELMKRGIFIIEPVRLSVKTDGQFLLYQIIGISLVPKRKHQI 1740
Cdd:CHL00204  1610 KVYCLLLRLINPREIAISSIQRGEMSLDIMMIQKNLTLTELMKKGILIIEPVRLSVKNDGQFIIYQTIGISLVHKNKHQI 1689

                         1770      1780      1790      1800      1810      1820      1830      1840
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130 1741 HQRYLEKggVYVDknKKNFDESIALHEKMNGNRDKNHYDLLVPENILSPRRRRELRIIICFNSSNRIGIHRNIVFCNGNK 1820
Cdd:CHL00204  1690 NQRYREK--KYVD--KKNFDESITKHQTITENRDKNHYDLLVPENILSPKRRRELRILICFNSKNKNAVDRNSVFCNEKN 1765

                         1850      1860      1870      1880      1890      1900
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2106371130 1821 VKNydCDQVLNKRKNLDRDENKLIKLKFFLWPNYRLEDLSCMNRYWFDTNNGSRFSLVRIQMYPRLKIH 1889
Cdd:CHL00204  1766 VKN--CGQVLDKKKDLDKDKNKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMLRIHMYPRLKIR 1832
Ycf1 pfam05758
Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames ...
 22-954 0e+00

Ycf1; The chloroplast genomes of most higher plants contain two giant open reading frames designated ycf1 and ycf2. Although the function of Ycf1 is unknown, it is known to be an essential gene.


Pssm-ID: 368599 [Multi-domain]  Cd Length: 944  Bit Score: 1527.14  E-value: 0e+00
                           10        20        30        40        50        60        70        80
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   22 VVVVGLYYGFLTTFSIGPSYLFLLRARVI---EEGIEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 98
Cdd:pfam05758    1 VVVVGLYYGFLTTFSIGPSYLFLLRARVMeegEEGTEKKVSATTGFITGQLMMFISIYYAPLHLALGRPHTITVLALPYL 80

                           90       100       110       120       130       140       150       160
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130   99 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLVRLVNIYMFRCNNKILFVTSSFVGWLIGH 178
Cdd:pfam05758   81 LFHFFWNNHKHFFDYGSTTRNSMRNLSIQCVFLNNLIFQLFNHFILPSSMLARLVNIYMFRCNNKMLFVTSSFVGWLIGH 160

                          170       180       190       200       210       220       230       240
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  179 ILFMKWVGLVLVWIQQKNSIRSN------KYLVSELINSMARIFSILLFITCVYYLGRVPSPIVTKKLKETSETEERGES 252
Cdd:pfam05758  161 ILFMKWVGLVLVWIQQNNSIRSNvlirsnKYLVSELRNSMARIFSILLFITCVYYLGRIPSPIFTKKLKETSETEERYES 240

                          250       260       270       280       290       300       310       320
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  253 EEETDVEIETTSETKGTKQEQEEYTEEDPSPSLFSEEKEDPDKIDETEEIRMNGKEKTKDE--FHFKETRYKNRPIYETS 330
Cdd:pfam05758  241 EEETDVEIETTSETKGTKQEQERSTEEDPSPSLFSEEGEDLDKIDETEEIRVNGKDKIKDEfhFHFRETCYKNSPIYETS 320

                          330       340       350       360       370       380       390       400
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  331 YLDGNQENSKLEIFKEIKD-KERFWFEKPLVTILFDYKRFHRPFRYIKNDRFENSVKNEMSQSFFHTCKSDGKERISFTH 409
Cdd:pfam05758  321 YLDGNQENSKLEILKEKKKnKNLFWFEKPLVTLLFDYKRWNRPFRYIKNNRFENAVRNEMSQYFFYTCQSDGKERISFTY 400

                          410       420       430       440       450       460       470       480
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  410 PPSLSTFLKIIERKMSLFTIKRISYNELYNHWSYANEQKKNNISKKFIHRIETYDKRFLALEVLEKRIRLCNNETKKEYF 489
Cdd:pfam05758  401 PPSLSTFFEMIQKKIPLFTKEKLSYDELSNYWSYTNEEKRNNLSKEFLNRIEALDKESLSLDILEKRTRLCNDETKKEYL 480

                          490       500       510       520       530       540       550       560
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  490 PTISDPLLNGPYRGQIKKFFLFSIL-KTSVKNCMETIGVNKIHGILLTKNYPEFDRNVDLFDRKPLSTEIGYLLNIISKV 568
Cdd:pfam05758  481 PKIYDPFLNGPYRGRIKKVFSPSIInKTSRKNSLEGVWINKIHGILLSSNYPEFEQKINIFDRKSLSTEIDYFLNLINEF 560

                          570       580       590       600       610       620       630       640
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  569 AGKSISNLNGKGLSLFPENKQVRIYSEDRIKILNFLFDQVITDLKDKTIRQKDIGIKEITKEVPQWSYKLIDELEQQEGE 648
Cdd:pfam05758  561 SKKSVSSLNFKGLSLFPEQEQVKINSEEEKKILKFLFDAVRTDSNEKTIRKKSIGIKEINKKVPRWSYKLIDELEQLEGE 640

                          650       660       670       680       690       700       710       720
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  649 KEENVVQDHEIRSRKSKRVVIFTDTPQNTDPYTNTKDTDNPDKADEVALIRYSQQSDFRRDIIKGSIRAQRRKTVIWELF 728
Cdd:pfam05758  641 NEENVAEDYQIRSRKAKRVVIFTDNQKNYDTYNNTKDTDNSEQKNEVALIRYSQQSDFRRDIIKGSMRAQRRKTVIWELF 720

                          730       740       750       760       770       780       790       800
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  729 EANVHSPLFLDRLDNPLFFSFDIPELMKIIFINLIWKKKEFKISGYTEEKKKESEKTEEDKSEKYKREEKVRIEIGEAWD 808
Cdd:pfam05758  721 QANVHSPLFLDRIDKPLFFSFDIFGLIKIIFKNWMRKKEEFKISSYTEEKTKESSKKEEDKKEDNKREERARIEIAEAWD 800

                          810       820       830       840       850       860       870       880
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2106371130  809 SIIFAQVIRGSLLVIQSILRKYILLPSLIIAKNMVRILLFQFPECYEDLKDWKKEMHVKCTYNGVQLSEKEFPKNWLTDG 888
Cdd:pfam05758  801 SILFAQIIRGCLLITQSILRKYIILPSLIIAKNIGRMLFFQFPEWSEDLKDWKREMHIKCTYNGVQLSETEFPKNWLTDG 880

                          890       900       910       920       930       940
                   ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2106371130  889 IQIKILFPFRLKPWHRSKLRSPHKDQIKKngKGQKNDFCFLTVWGMEAELPFGSPRNRFSIFEPVF 954
Cdd:pfam05758  881 IQIKILFPFRLKPWHKSKLRSSEKDLMKK--KVQKNDFCFLTVWGMETELPFGSPRKRPSFFEPIF 944
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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