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Conserved domains on  [gi|2159368620|gb|UFR83458|]
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NADH dehydrogenase subunit 3, partial [Lagurus lagurus]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-113 8.05e-62

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 183.99  E-value: 8.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00106    3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00106   83 NLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-113 8.05e-62

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 183.99  E-value: 8.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00106    3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00106   83 NLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
16-110 8.74e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 87.09  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620  16 ISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTNLPT-IMAFLLIT 94
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGfVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2159368620  95 ILGLGLAYEWTQKGLE 110
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-111 2.12e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 71.31  E-value: 2.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   5 LAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTNL 84
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*...
gi 2159368620  85 PTIMA-FLLITILGLGLAYEWTQKGLEW 111
Cdd:COG0838    90 FGLIEmLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-113 8.05e-62

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 183.99  E-value: 8.05e-62
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00106    3 LMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTN 82

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00106   83 NLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-113 7.52e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 141.21  E-value: 7.52e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00136    4 ITTILTITIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGDQLP 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00136   84 SPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 1-113 1.71e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 132.81  E-value: 1.71e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-112 5.01e-38

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 123.84  E-value: 5.01e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00113    3 LISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLT 82

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2159368620  81 NTNLPTIMAFLLITILGLGLAYEWTQKGLEWT 112
Cdd:MTH00113   83 TPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-111 1.46e-32

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 109.99  E-value: 1.46e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFP 80
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2159368620  81 NTNLptIMAFLLITILGLGLAYEWTQKGLEW 111
Cdd:MTH00203   84 SLSL--LLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 4-113 2.99e-32

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 109.30  E-value: 2.99e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   4 ILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFPNTN 83
Cdd:MTH00042    7 FLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATLITNPS 86

                          90       100       110
                  ....*....|....*....|....*....|
gi 2159368620  84 LPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00042   87 TLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
16-110 8.74e-24

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 87.09  E-value: 8.74e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620  16 ISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTNLPT-IMAFLLIT 94
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGfVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2159368620  95 ILGLGLAYEWTQKGLE 110
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-113 6.74e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 85.68  E-value: 6.74e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMY-TEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQF 79
Cdd:MTH00148    4 ILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSLGS 83

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2159368620  80 PNTNLPTIMAFLLITILGLGLAYEWTQKGLEWTE 113
Cdd:MTH00148   84 SFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 1-111 4.12e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 83.29  E-value: 4.12e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWL-PHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQF 79
Cdd:MTH00161    2 ILIILLIILLISIILMILASLLsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKT 81

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2159368620  80 PNTNLPTIMAFLLITILGLGLAYEWTQKGLEW 111
Cdd:MTH00161   82 SNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 2-111 7.83e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 82.73  E-value: 7.83e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   2 MPILAINITLAIILISVAFWLpHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQFPN 81
Cdd:MTH00202    7 MSILSILISSLLFLVSWMLSF-RSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVLKSSW 85

                          90       100       110
                  ....*....|....*....|....*....|
gi 2159368620  82 TNLPTIMAFLLITILGLGLAYEWTQKGLEW 111
Cdd:MTH00202   86 SKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-112 1.76e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 71.81  E-value: 1.76e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYT-EKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLPWAVQF 79
Cdd:MTH00012    4 MMIPMMISLILPPLVLGAAWVLAARSTADrEKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMT 83

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2159368620  80 PNTNLPTIMAFLLITILGLGLAYEWTQKGLEWT 112
Cdd:MTH00012   84 STSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 4-111 1.83e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 71.66  E-value: 1.83e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   4 ILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTN 83
Cdd:MTH00055   11 LLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFL--FPWCVVYNQIG 88

                          90       100
                  ....*....|....*....|....*....
gi 2159368620  84 L-PTIMAFLLITILGLGLAYEWTQKGLEW 111
Cdd:MTH00055   89 LfGFWVMYLFLIILTIGLIYEWVKGGLEW 117
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 5-111 2.12e-17

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 71.31  E-value: 2.12e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   5 LAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTNL 84
Cdd:COG0838    12 LLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGW 89

                          90       100
                  ....*....|....*....|....*...
gi 2159368620  85 PTIMA-FLLITILGLGLAYEWTQKGLEW 111
Cdd:COG0838    90 FGLIEmLVFIAILLVGLIYAWKKGALEW 117
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 5-112 1.15e-16

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 69.89  E-value: 1.15e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   5 LAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTNL 84
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100
                  ....*....|....*....|....*....
gi 2159368620  85 PT-IMAFLLITILGLGLAYEWTQKGLEWT 112
Cdd:PRK06602   93 LGfVEAMIFILVLLVGLVYLWRKGALDWE 121
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 4-111 2.23e-15

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 66.24  E-value: 2.23e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   4 ILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFPNTN 83
Cdd:MTH00018    6 LLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVLYNQIA 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2159368620  84 L---PTIMAFLLITILGLGlaYEWTQKGLEW 111
Cdd:MTH00018   84 PfgfWTMVGFLFILTLGLI--YEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 4-111 3.89e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 66.11  E-value: 3.89e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   4 ILAINITLAIILISVAFWLPHLNMY---TEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLlpLPWAVQFP 80
Cdd:MTH00030   13 LLGVGIILLLVSISFTLGNSRIGLTkpdSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPWSIVFN 90

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2159368620  81 NTNLPTI-MAFLLITILGLGLAYEWTQKGLEW 111
Cdd:MTH00030   91 QLNLFSFwIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 31-112 4.72e-09

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 50.06  E-value: 4.72e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620  31 KANPYECGFDPMSSARLP--FSMKFFLVAITFLLFDLEIALLLPlpWAVQFPNTNLPTIMAFLLITILGLGL-AYEWTQK 107
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMALFMLTVFVAyAYVWRRG 114


                  ....*
gi 2159368620 108 GLEWT 112
Cdd:PRK07928  115 GLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
5-111 2.11e-07

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 45.89  E-value: 2.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   5 LAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPlpWAVQFPNTNL 84
Cdd:PRK07756   16 LLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVAYDKLGL 93

                          90       100
                  ....*....|....*....|....*...
gi 2159368620  85 -PTIMAFLLITILGLGLAYEWTQKGLEW 111
Cdd:PRK07756   94 fALIEMLIFVVMLLVGLAYAWKKKVLQW 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 1-112 3.12e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 45.36  E-value: 3.12e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2159368620   1 MMPILAINITLAIILIS-----VAFWLPHL----NMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLl 71
Cdd:CHL00022    1 MFLLYEYDIFWAFLIISslipiLAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2159368620  72 pLPWAVQFPNTNLPT-IMAFLLITILGLGLAYEWTQKGLEWT 112
Cdd:CHL00022   80 -YPWAMSFDVLGVSAfIEALIFVLILIVGLVYAWRKGALEWS 120
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-71 5.02e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 39.11  E-value: 5.02e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2159368620   1 MMPILAINITLAIILISVAFWLPHLNMYTEKANPYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLL 71
Cdd:MTH00092    4 LIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 34-74 5.12e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.80  E-value: 5.12e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2159368620  34 PYECGFDPMSSARLPFSMKFFLVAITFLLFDLEIALLLPLP 74
Cdd:MTH00060   40 SFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
31-79 5.17e-04

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 36.95  E-value: 5.17e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2159368620  31 KANPYECGFDPMSSARlPFSMKFFLVAITFLLFDLEIALLlpLPWAVQF 79
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDF 92
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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