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Conserved domains on  [gi|2186483975|gb|UKA77689|]
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NADH dehydrogenase subunit 3 [Platydemus manokwari]

Protein Classification

Graphical summary

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List of domain hits

Name Accession Description Interval E-value
PRK06602 super family cl00535
NADH:ubiquinone oxidoreductase subunit A; Validated
5-117 9.23e-12

NADH:ubiquinone oxidoreductase subunit A; Validated


The actual alignment was detected with superfamily member MTH00148:

Pssm-ID: 469809 [Multi-domain]  Cd Length: 117  Bit Score: 57.17  E-value: 9.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWvYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLlqMPYEVD 84
Cdd:MTH00148    4 ILLSLLFALILSPVLLLL-GLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLL--FPVLQS 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  85 F---FLYGNRFWFWLFVFILFFGIVEELRLGLLSWK 117
Cdd:MTH00148   81 LgssFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
5-117 9.23e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 57.17  E-value: 9.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWvYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLlqMPYEVD 84
Cdd:MTH00148    4 ILLSLLFALILSPVLLLL-GLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLL--FPVLQS 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  85 F---FLYGNRFWFWLFVFILFFGIVEELRLGLLSWK 117
Cdd:MTH00148   81 LgssFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
3-116 2.08e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.49  E-value: 2.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   3 FYVLLFFFIIVILCFLIVVWVYWLdlLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYE 82
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLL--GPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWA 81
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  83 VDFFLYGNRFWFW--LFVFILFFGIVEELRLGLLSW 116
Cdd:COG0838    82 VVFRELGWFGLIEmlVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-114 3.05e-04

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 37.02  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975  31 SSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYEVDFFLYGNrFWFW---LFVFILFFGIVE 107
Cdd:pfam00507  10 KRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGW-FGFVemlIFIAILLVGLVY 86

                  ....*..
gi 2186483975 108 ELRLGLL 114
Cdd:pfam00507  87 AWKKGAL 93
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
5-117 9.23e-12

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 57.17  E-value: 9.23e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWvYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLlqMPYEVD 84
Cdd:MTH00148    4 ILLSLLFALILSPVLLLL-GLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLL--FPVLQS 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  85 F---FLYGNRFWFWLFVFILFFGIVEELRLGLLSWK 117
Cdd:MTH00148   81 LgssFSVWSLTSLFIFLLILILGLFHEWNEGSLDWV 116
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
10-116 7.06e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 54.86  E-value: 7.06e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975  10 FIIVILCFLIVVWVYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPY-EVDFFLY 88
Cdd:MTH00012    8 MMISLILPPLVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTiLMTSTSK 87
                          90       100
                  ....*....|....*....|....*...
gi 2186483975  89 GNRFWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00012   88 TVVYTSILFLLILVIGLIHEWREGSLDW 115
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
5-116 9.86e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 54.40  E-value: 9.86e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWVYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPYEVD 84
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80
                          90       100       110
                  ....*....|....*....|....*....|...
gi 2186483975  85 FFLYGNRFW-FWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00161   81 TSNMMSWLItSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
6-116 3.75e-10

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 53.07  E-value: 3.75e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   6 LLFFFIIVILCFLIVVWVYWLDLLGSS---YNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPYE 82
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFrslMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2186483975  83 VDFF-LYGNRFWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00202   81 LKSSwSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
2-116 1.26e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 51.44  E-value: 1.26e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   2 LFYVLLFFFIIVILCFLIVVWVYWLDLLGssynrESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPY 81
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDG-----EKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPW 78
                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2186483975  82 eVDFFLYGNRFWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00203   79 -SNQLSSLSLLLAFLFLILLTLGLIYEWLQGGLEW 112
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
5-116 3.23e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 50.38  E-value: 3.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWVYWLDLlgSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPYEVD 84
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPL--NNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQ 79
                          90       100       110
                  ....*....|....*....|....*....|...
gi 2186483975  85 FFLYGNR-FWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00069   80 LNTPTNTlFWSTLILILLTLGLIYEWIQGGLEW 112
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
5-81 4.20e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 50.30  E-value: 4.20e-09
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2186483975   5 VLLFFFIIVILCFLIVVWVYWLDLLGSSYnrESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPY 81
Cdd:MTH00136    4 ITTILTITIALSLILAIVSFWLPQMTPDH--EKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPW 78
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
6-116 1.56e-07

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 46.13  E-value: 1.56e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   6 LLFFFIIVILCFLIVVWVYWLDLLgsSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPYEVdF 85
Cdd:MTH00042    5 IFFLLIILILTSLLLLAGHFLPSR--SPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT-L 81
                          90       100       110
                  ....*....|....*....|....*....|...
gi 2186483975  86 FLYGNR--FWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00042   82 ITNPSTllPISLIFLIILTIGLVYEWVNGGLEW 114
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
6-81 2.09e-07

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 45.70  E-value: 2.09e-07
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2186483975   6 LLFFFIIVILCFLIVVWVYWLDLLgSSYNrESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPY 81
Cdd:MTH00106    4 MLTLLTNTLLASLLVLIAFWLPQL-NIYS-EKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPW 77
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
6-80 1.22e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 43.72  E-value: 1.22e-06
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2186483975   6 LLFFFIIVILCFLIVVWVYWLDLLgsSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMP 80
Cdd:MTH00113    4 ISMLTISLALSTILTTLNFWLTQT--KPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLP 76
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
3-116 8.26e-06

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 41.77  E-value: 8.26e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   3 FYVLLFFFIIVILCFLIVVWVYWLDllGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYE 82
Cdd:PRK06602    9 LPFLIFLIVAIGLGILLLVAGKLLG--PRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLF--PWA 84
                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2186483975  83 VDFFLYGnRFWFW---LFVFILFFGIVEELRLGLLSW 116
Cdd:PRK06602   85 VSFREIG-WLGFVeamIFILVLLVGLVYLWRKGALDW 120
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
1-116 1.07e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 41.42  E-value: 1.07e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   1 MLFYVLLFFFIIVILCFLIVVWVYWLDLLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMP 80
Cdd:MTH00060    1 MLVLLFVFFVFFLLFLVIYFFHSGLWNNKIYSGGFSWVSSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  81 YevDFFLYGNRFWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00060   81 F--QGLLFYNFWYYYFFLLLLFLGFVVELFSGYVRW 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
3-116 2.08e-05

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 40.49  E-value: 2.08e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   3 FYVLLFFFIIVILCFLIVVWVYWLdlLGSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYE 82
Cdd:COG0838     6 LPILIFLLVALGLALAMLLLSRLL--GPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLF--PWA 81
                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2186483975  83 VDFFLYGNRFWFW--LFVFILFFGIVEELRLGLLSW 116
Cdd:COG0838    82 VVFRELGWFGLIEmlVFIAILLVGLIYAWKKGALEW 117
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
31-114 3.05e-04

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 37.02  E-value: 3.05e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975  31 SSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYEVDFFLYGNrFWFW---LFVFILFFGIVE 107
Cdd:pfam00507  10 KRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLF--PWAVSFRELGW-FGFVemlIFIAILLVGLVY 86

                  ....*..
gi 2186483975 108 ELRLGLL 114
Cdd:pfam00507  87 AWKKGAL 93
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
5-116 2.69e-03

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 35.04  E-value: 2.69e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975   5 VLLFFFIIVILCFLIVVWVYWLDLlgSSYNRESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLQMPYEVD 84
Cdd:MTH00018    3 LFILLIFSVVLSALFSGASYFLGV--KQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYN 80
                          90       100       110
                  ....*....|....*....|....*....|..
gi 2186483975  85 FFLYGNRFWFWLFVFILFFGIVEELRLGLLSW 116
Cdd:MTH00018   81 QIAPFGFWTMVGFLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
36-117 6.09e-03

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 33.91  E-value: 6.09e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2186483975  36 ESISPYECGFDGKDLSRLPFSLRFFLIIIFYIILDVEICLLLqmPYEVDFFLYGnRFWFW---LFVFILFFGIVEELRLG 112
Cdd:MTH00055   37 EKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLF--PWCVVYNQIG-LFGFWvmyLFLIILTIGLIYEWVKG 113

                  ....*
gi 2186483975 113 LLSWK 117
Cdd:MTH00055  114 GLEWE 118
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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