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Conserved domains on  [gi|2202803977|gb|UML84125|]
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NADH-quinone oxidoreductase subunit NuoF [Leptospira interrogans]

Protein Classification

NADH oxidoreductase (quinone) subunit F( domain architecture ID 11493352)

NADH oxidoreductase (quinone) subunit F (NuoF) is part of the dehydrogenase domain of the complex I of the respiratory chain that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

 Zoom to residue level

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List of domain hits

 Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 6-415 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


:

Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   6 LLTKYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDI-PKPKYIICNAD 83
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDsPKPKYLVCNAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  84 EGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILY 163
Cdd:TIGR01959  81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 164 EGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSV 243
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 244 SGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAE 323
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMDE 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 324 GTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPA 403
Cdd:TIGR01959 321 STCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQSA 399

                         410
                  ....*....|..
gi 2202803977 404 LQKFRSEFDAKL 415
Cdd:TIGR01959 400 IKHFRDEFEAHI 411
 
Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 6-415 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   6 LLTKYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDI-PKPKYIICNAD 83
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDsPKPKYLVCNAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  84 EGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILY 163
Cdd:TIGR01959  81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 164 EGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSV 243
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 244 SGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAE 323
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMDE 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 324 GTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPA 403
Cdd:TIGR01959 321 STCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQSA 399

                         410
                  ....*....|..
gi 2202803977 404 LQKFRSEFDAKL 415
Cdd:TIGR01959 400 IKHFRDEFEAHI 411
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 3-418 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 734.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   3 EMKLLTKYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIPKPKYIICN 81
Cdd:COG1894     3 QTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVCN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  82 ADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLI 161
Cdd:COG1894    83 ADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 162 LYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLF 241
Cdd:COG1894   163 VHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 242 SVSGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKTAnMDFESMAAHKTMLGSGAVIVL 321
Cdd:COG1894   243 SLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTP-MDYESLAAAGSMLGSGGMIVM 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 322 AEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVR 401
Cdd:COG1894   322 DETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNPVL 400

                         410
                  ....*....|....*..
gi 2202803977 402 PALQKFRSEFDAKLKVK 418
Cdd:COG1894   401 STLKYFRDEFEAHIKDK 417
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
28-424 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 520.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  28 YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEG 106
Cdd:PRK13596   29 WDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDgRPHYLVVNADESEPGTCKDRDILRHDPHKLIEG 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 107 MIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRG 186
Cdd:PRK13596  109 CLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKG 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 187 HPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266
Cdd:PRK13596  189 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIPFRELIE 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 267 DLCGGII---DDkpLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESC 343
Cdd:PRK13596  269 KHAGGVRggwDN--LLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESC 346

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 344 GQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPALQKFRSEFDAKLKVKPIVPD 423
Cdd:PRK13596  347 GQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIE-GHTICALGDAAAWPIQGLIRHFRPEIEERIDQYTANAH 425


                  .
gi 2202803977 424 H 424
Cdd:PRK13596  426 S 426
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
46-217 8.46e-66

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 207.37  E-value: 8.46e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  46 VKKSGLRGRGGAGFPTGLKWSFIPKDipKPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRG 125
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKK--KIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 126 EFQKGAKAMQAAIDEAYSKGylgknilgsgfdFDLILYEGAGAYICGEETALINSLEGrRGHPRLKPpfPAVSGLyrspt 205
Cdd:pfam01512  79 EKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV----- 138

                         170
                  ....*....|..
gi 2202803977 206 VVNNVETFSAIP 217
Cdd:pfam01512 139 VVNNVETLAAVP 150
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
328-373 9.64e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 87.58  E-value: 9.64e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2202803977  328 VETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDI 373
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
 
Name Accession Description Interval E-value
nuoF_fam TIGR01959
NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that ...
 6-415 0e+00

NADH-quinone oxidoreductase, F subunit; This model describes the F chain of complexes that resemble NADH-quinone oxidoreductases. The electron acceptor is a quinone, ubiquinone, in mitochondria and most bacteria, including Escherichia coli, where the recommended gene symbol is nuoF. This family does not have any members in chloroplast or cyanobacteria, where the quinone may be plastoquinone and NADH may be replaced by NADPH, nor in Methanosarcina, where NADH is replaced by F420H2. [Energy metabolism, Electron transport]


Pssm-ID: 131014  Cd Length: 411  Bit Score: 744.92  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   6 LLTKYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDI-PKPKYIICNAD 83
Cdd:TIGR01959   1 VLTTNLDNPESWTLEEYEKRGGYDALRKALeEMSPDDIIEEVKDSGLRGRGGAGFPTGLKWSFMPKDDsPKPKYLVCNAD 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  84 EGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILY 163
Cdd:TIGR01959  81 ESEPGTCKDRDLMEFDPHQLIEGMIIAAYAIGAHRGYIYIRGEFIKEAENLEAAIAEAYAAGLLGKNILGSGFDFELFVH 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 164 EGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSV 243
Cdd:TIGR01959 161 RGAGAYICGEETALLESLEGKRGQPRLKPPFPAVFGLYGKPTVINNVETLASVPAILRRGADWYRKLGKEKSPGTKLFSV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 244 SGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAE 323
Cdd:TIGR01959 241 SGHVNKPGNYELPLGTPLRELLEDYAGGMRGGWKLKAVIPGGSSTPVLPAEQHLDAPMDYDSLAAAGSMLGTGAVIVMDE 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 324 GTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPA 403
Cdd:TIGR01959 321 STCMVKAVRRLSEFYAHESCGQCTPCREGTGWMVKILERIEEGEGTKEDIDLLLSVCKQIE-GKTICALGDAAAWPVQSA 399

                         410
                  ....*....|..
gi 2202803977 404 LQKFRSEFDAKL 415
Cdd:TIGR01959 400 IKHFRDEFEAHI 411
NuoF COG1894
NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and ...
 3-418 0e+00

NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) [Energy production and conversion]; NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit (chain F) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 441498 [Multi-domain]  Cd Length: 418  Bit Score: 734.12  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   3 EMKLLTKYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIPKPKYIICN 81
Cdd:COG1894     3 QTRVLLRNCGIIDPESLEDYIARGGYQALRKALtEMTPEEVIEEVKDSGLRGRGGAGFPTGLKWSFVPKAPGDPKYLVCN 82

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  82 ADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLI 161
Cdd:COG1894    83 ADEGEPGTFKDRSLLEGDPHQLIEGMIIAAYAIGATKGYIYIRGEYPLAIERLEKAIEEAREAGLLGKNILGSGFDFDIE 162

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 162 LYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLF 241
Cdd:COG1894   163 VHRGAGAYICGEETALLESLEGKRGQPRLKPPFPAVSGLWGKPTVVNNVETLANVPHIIRNGAEWFASIGTEKSKGTKLF 242

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 242 SVSGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKTAnMDFESMAAHKTMLGSGAVIVL 321
Cdd:COG1894   243 SLSGHVKNPGLYEVPMGTTLRELIYDIGGGIRGGRKLKAVQPGGPSGGCLPAEHLDTP-MDYESLAAAGSMLGSGGMIVM 321

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 322 AEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVR 401
Cdd:COG1894   322 DETTCMVDVARFFLEFYAHESCGKCTPCREGTGWMLEILDRIEAGEGTEEDLDLLEDLADTIK-GTSLCALGDAAPNPVL 400

                         410
                  ....*....|....*..
gi 2202803977 402 PALQKFRSEFDAKLKVK 418
Cdd:COG1894   401 STLKYFRDEFEAHIKDK 417
PRK13596 PRK13596
NADH-quinone oxidoreductase subunit NuoF;
28-424 0e+00

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 237441  Cd Length: 433  Bit Score: 520.30  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  28 YDGMKKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEG 106
Cdd:PRK13596   29 WDGTKAILDKGRDWIIEEMKASGLRGRGGAGFPTGLKWSFMPKESDgRPHYLVVNADESEPGTCKDRDILRHDPHKLIEG 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 107 MIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRG 186
Cdd:PRK13596  109 CLIASFAMGAHAAYIYIRGEFIREREALQAAIDEAYEAGLIGKNACGSGWDFDIYVHHGAGAYICGEETALLESLEGKKG 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 187 HPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVN 266
Cdd:PRK13596  189 QPRLKPPFPANVGLYGCPTTVNNVESIAVVPTILRRGAAWFASIGRPNNTGTKLFCISGHVNKPCNVEEAMGIPFRELIE 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 267 DLCGGII---DDkpLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESC 343
Cdd:PRK13596  269 KHAGGVRggwDN--LLAVIPGGSSVPLIPAEQCEDAIMDFDSLRAVGSGLGTAAVIVMDKSTDIIKAIARLSYFYKHESC 346

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 344 GQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPALQKFRSEFDAKLKVKPIVPD 423
Cdd:PRK13596  347 GQCTPCREGTGWMWRVMERMVKGRAQKREIDMLLDVTKQIE-GHTICALGDAAAWPIQGLIRHFRPEIEERIDQYTANAH 425


                  .
gi 2202803977 424 H 424
Cdd:PRK13596  426 S 426
PTZ00304 PTZ00304
NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional
 32-416 5.84e-163

NADH dehydrogenase [ubiquinone] flavoprotein 1; Provisional


Pssm-ID: 185547 [Multi-domain]  Cd Length: 461  Bit Score: 467.34  E-value: 5.84e-163
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  32 KKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP--KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMII 109
Cdd:PTZ00304   53 KDILLKGHDWIIDEIKKSGLRGRGGAGFPSGLKWSFMPKVKPdgRPSYLVVNADESEPGTCKDREIMRHDPHKLVEGALL 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 110 GARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPR 189
Cdd:PTZ00304  133 AGFAMRARAAYIYIRGEFYNEARALQQAIDEAYKKGFLGKNACGSGYDFDVYVHRGAGAYICGEETALIESIEGKPGKPR 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 190 LKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVNDLC 269
Cdd:PTZ00304  213 LKPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPQWFASFGRPNNAGTKLFCISGHVNNPCTVEEEMSIPLRELIERHC 292

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 270 GGII---DDkpLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQC 346
Cdd:PTZ00304  293 GGVRggwDN--LLCVIPGGSSVPLIPKEICDNVLMDFDALKEVQSGLGTAAVIVMDKSTDIIDAILRLSKFYKHESCGQC 370

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 347 TPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416
Cdd:PTZ00304  371 TPCREGTPWLVKMMERFVVGNADKEEIDTLEEVSKQIE-GHTICALGDAAAWPVQGLIRHFRPEIEERIE 439
PLN03132 PLN03132
NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
 32-416 8.53e-151

NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional


Pssm-ID: 178678 [Multi-domain]  Cd Length: 461  Bit Score: 436.22  E-value: 8.53e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  32 KKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIG 110
Cdd:PLN03132   64 KDLVLKGPDWIVNEMKKSGLRGRGGAGFPSGLKWSFMPKVSDgRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIA 143

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 111 ARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRL 190
Cdd:PLN03132  144 GVGMRARAAYIYIRGEYVNERLNLERARHEAYAAGLLGKNACGSGYDFDVYIHYGAGAYICGEETALLESLEGKQGKPRL 223

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 191 KPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSPGTRLFSVSGHVKKPGVYEIELGTPLLELVNDLCG 270
Cdd:PLN03132  224 KPPFPANVGLYGCPTTVTNVETVAVSPTILRRGPEWFASFGRKNNAGTKLFCISGHVNKPCTVEEEMSIPLKELIERHCG 303

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 271 GIIDD-KPLKAIIPGGSSVPILTAEECKTANMDFESMAAHKTMLGSGAVIVLAEGTDIVETTYRFARFYAHESCGQCTPC 349
Cdd:PLN03132  304 GVRGGwDNLLAIIPGGSSVPLLPKKICDDVLMDFDALKAVQSGLGTAAVIVMDKSTDVVDAIARLSYFYKHESCGQCTPC 383

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2202803977 350 REGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPALQKFRSEFDAKLK 416
Cdd:PLN03132  384 REGTGWLWDIMERMKVGNAKLEEIDMLQEVTKQIE-GHTICALGDAAAWPVQGLIRHFRPELERRIK 449
PRK11278 PRK11278
NADH-quinone oxidoreductase subunit NuoF;
2-419 3.30e-150

NADH-quinone oxidoreductase subunit NuoF;


Pssm-ID: 236891 [Multi-domain]  Cd Length: 448  Bit Score: 434.23  E-value: 3.30e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977   2 AEMKLLT-KYIDNPQSTKLEFYESVHGYDGMKKAL-QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYI 78
Cdd:PRK11278    9 PETHPLTwRLRDDKQPVWLDEYRSKNGYEGARKALtGMSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESmNIRYL 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  79 ICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKNILGSGFDF 158
Cdd:PRK11278   89 LCNADEMEPGTYKDRLLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNIMGTGFDF 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 159 DLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVVNNVETFSAIPHILDKGADWYSKIGTEKSP-- 236
Cdd:PRK11278  169 ELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNNVETLCNVPAILANGVEWYQNISKGKSKda 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 237 GTRLFSVSGHVKKPGVYEIELGTPLLELVNDLCGGIIDDKPLKAIIPGGSSVPILTAEECKtANMDFESMAAHKTMLGSG 316
Cdd:PRK11278  249 GTKLMGFSGRVKNPGLWELPFGTTAREILEDYAGGMRDGLKFKAWQPGGAGTDFLTEAHLD-LPMEFESIGKAGSRLGTA 327

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 317 AVIVLAEGTDIVETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEGGTTICPLSDAC 396
Cdd:PRK11278  328 LAMAVDHEINMVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLGPGKTFCAHAPGA 407

                         410       420
                  ....*....|....*....|...
gi 2202803977 397 VGAVRPALQKFRSEFDAKLKVKP 419
Cdd:PRK11278  408 VEPLQSAIKYFREEFEAGIKQPF 430
Complex1_51K pfam01512
Respiratory-chain NADH dehydrogenase 51 Kd subunit;
46-217 8.46e-66

Respiratory-chain NADH dehydrogenase 51 Kd subunit;


Pssm-ID: 460237 [Multi-domain]  Cd Length: 150  Bit Score: 207.37  E-value: 8.46e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  46 VKKSGLRGRGGAGFPTGLKWSFIPKDipKPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRG 125
Cdd:pfam01512   1 VKEAGIVGRGGAGFPTHVKLSPPPKK--KIKYLIVNGAECEPGLTKDRRLMRERPHEIIEGIKIAAYALGAKRGVIGIRD 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 126 EFQKGAKAMQAAIDEAYSKGylgknilgsgfdFDLILYEGAGAYICGEETALINSLEGrRGHPRLKPpfPAVSGLyrspt 205
Cdd:pfam01512  79 EKPEAIAALEKAIAEARAAG------------FDIEVHRGAGAYPCGEEKALIYSLTG-RGVPRGKP--PADVGV----- 138

                         170
                  ....*....|..
gi 2202803977 206 VVNNVETFSAIP 217
Cdd:pfam01512 139 VVNNVETLAAVP 150
NADH_4Fe-4S pfam10589
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
329-413 7.72e-36

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 463160 [Multi-domain]  Cd Length: 85  Bit Score: 127.21  E-value: 7.72e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 329 ETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDIDLIFSLSRNMEgGTTICPLSDACVGAVRPALQKFR 408
Cdd:pfam10589   1 DVARRFLEFYAHESCGKCTPCREGTKWLAEILERIVDGEGTEEDLDLLEELARTIK-GRSLCGLGDGAANPVLSALRYFR 79


                  ....*
gi 2202803977 409 SEFDA 413
Cdd:pfam10589  80 DEFEA 84
NADH_4Fe-4S smart00928
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;
328-373 9.64e-22

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region;


Pssm-ID: 197996 [Multi-domain]  Cd Length: 46  Bit Score: 87.58  E-value: 9.64e-22
                           10        20        30        40
                   ....*....|....*....|....*....|....*....|....*.
gi 2202803977  328 VETTYRFARFYAHESCGQCTPCREGTHWVRDILYKIREGEGTTEDI 373
Cdd:smart00928   1 VDAARRLMEFYAHESCGKCTPCREGTGWLLEILDRIEEGEGTEEDL 46
RnfC COG4656
Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and ...
 36-285 2.82e-16

Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit is part of the Pathway/BioSystem: Na+-translocating Fd:NADH oxidoreductase


Pssm-ID: 443694 [Multi-domain]  Cd Length: 451  Bit Score: 80.57  E-value: 2.82e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  36 QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSfiPKDIPKPKYIICNADEGEPG-TFKDRKLIENlPHQIIEGMIIGARAI 114
Cdd:COG4656   118 DLSPEEIIERIREAGIVGLGGAGFPTHVKLS--PPPDKKIDTLIINGAECEPYlTCDDRLMRER-AEEIIEGIRILMKAL 194

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 115 GSNKGFFYIRGEFQKGAKAMQAAIDEAYskgylgknilgsgfDFDLI----LYeGAGAyicgeETALINSLEGR----RG 186
Cdd:COG4656   195 GAKKVIIGIEDNKPEAIAALRKALAGDD--------------DIEVVvlptKY-PQGG-----EKQLIKALTGRevpsGG 254

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 187 HprlkppfPAVSGLyrsptVVNNVETFSAIPHILDKGADWYSkigtekspgtRLFSVSGH-VKKPGVYEIELGTPLLELV 265
Cdd:COG4656   255 L-------PADVGV-----VVQNVGTAYAIYRAVRDGKPLIE----------RVVTVTGDaVKEPGNLLVRIGTPVSDLL 312

                         250       260
                  ....*....|....*....|
gi 2202803977 266 nDLCGGIIDDkPLKaIIPGG 285
Cdd:COG4656   313 -EQAGGFKEE-PGK-LIMGG 329
rnfC TIGR01945
electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in ...
 36-300 4.67e-16

electron transport complex, RnfABCDGE type, C subunit; The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit. [Energy metabolism, Electron transport]


Pssm-ID: 273888 [Multi-domain]  Cd Length: 435  Bit Score: 79.69  E-value: 4.67e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  36 QMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDipKPKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGARAIG 115
Cdd:TIGR01945 118 NLSPEEILEKIRAAGIVGLGGATFPTHVKLNPPPEK--KIETLIINGAECEPYLTCDDRLMRERAEEIIGGIRILLKILG 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 116 SNKGFFYIRGEFQKGAKAMQAAIDeayskgylgknilGSGFDFDLIlyegAGAYICGEETALINSLEGRRgHPRLKppFP 195
Cdd:TIGR01945 196 VKKVVIGIEDNKPEAIAALKKALG-------------GYNIKVRVL----PTKYPQGGEKQLIYALTGRE-VPSGG--LP 255

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 196 AVSGLyrsptVVNNVETFSAIPHILDKGADWYSKIGTekspgtrlfsVSGH-VKKPGVYEIELGTPLLELVNDlCGGiID 274
Cdd:TIGR01945 256 ADIGV-----VVQNVGTAFAIYEAVVNGKPLIERVVT----------VTGDaIRRPKNLWVLIGTPVSDILAF-CGG-FR 318

                         250       260
                  ....*....|....*....|....*....
gi 2202803977 275 DKPLKAIIPG---GSSVPILTAEECKTAN 300
Cdd:TIGR01945 319 EKPERLIMGGpmmGLALPSLDVPVTKGTS 347
SLBB pfam10531
SLBB domain;
241-291 3.59e-09

SLBB domain;


Pssm-ID: 463136 [Multi-domain]  Cd Length: 56  Bit Score: 52.67  E-value: 3.59e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2202803977 241 FSVSGHVKKPGVYEIELGTPLLELVnDLCGGIIDDKPLKAII-----PGGSSVPIL 291
Cdd:pfam10531   2 VTVTGEVKRPGNYEVPIGTTLSDLI-ELAGGFTDDADLDINLrrlkrPGGPMMGIA 56
PRK05035 PRK05035
electron transport complex protein RnfC; Provisional
 35-300 7.57e-08

electron transport complex protein RnfC; Provisional


Pssm-ID: 235334 [Multi-domain]  Cd Length: 695  Bit Score: 54.57  E-value: 7.57e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977  35 LQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIpkpKYIICNADEGEPGTFKDRKLIENLPHQIIEGMIIGAR-- 112
Cdd:PRK05035  123 RQLSPEELIERIRQAGIAGLGGAGFPTAVKLQPGGDKI---ETLIINGAECEPYITADDRLMRERADEIIEGIRILAHll 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 113 -------AIGSNKgffyirgefQKGAKAMQAAIDEAyskgylgknilgsgFDFDLI----LYEGAGayicgeETALINSL 181
Cdd:PRK05035  200 qpkevliGIEDNK---------PEAIAALRAALAGA--------------DDIRVRviptKYPSGG------EKQLIQIL 250

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2202803977 182 EGRR----GHprlkppfPAVSGLyrsptVVNNVETFSAIphildKGADWYSKIGTEkspgtRLFSVSGH-VKKPGVYEIE 256
Cdd:PRK05035  251 TGKEvpsgGR-------PADIGV-----LMQNVGTAYAI-----KRAVIDGEPLIE-----RVVTLTGEaVARPGNVWAR 308

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2202803977 257 LGTPLLELVnDLCGGIIDDKPLkaIIPGGS---------SVPILtaeecKTAN 300
Cdd:PRK05035  309 LGTPVRHLL-NQAGFKPDADQR--VIMGGPmmgftlpslDVPVV-----KTTN 353
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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