cytochrome b, partial (mitochondrion) [Rhinoceros unicornis]
cytochrome b( domain architecture ID 999999)
cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis
List of domain hits
Name | Accession | Description | Interval | E-value | |||
CYTB super family | cl31797 | cytochrome b; Provisional |
1-103 | 3.64e-59 | |||
cytochrome b; Provisional The actual alignment was detected with superfamily member MTH00100: Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 185.61 E-value: 3.64e-59
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00100 | cytochrome b; Provisional |
1-103 | 3.64e-59 | |||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 185.61 E-value: 3.64e-59
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-103 | 1.32e-34 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 115.82 E-value: 1.32e-34
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Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
41-103 | 8.90e-28 | |||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 97.16 E-value: 8.90e-28
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-103 | 6.21e-25 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 96.01 E-value: 6.21e-25
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cytb6/f_IV | TIGR01156 | cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
41-78 | 2.29e-08 | |||
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis] Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 48.64 E-value: 2.29e-08
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Name | Accession | Description | Interval | E-value | |||
CYTB | MTH00100 | cytochrome b; Provisional |
1-103 | 3.64e-59 | |||
cytochrome b; Provisional Pssm-ID: 177162 [Multi-domain] Cd Length: 379 Bit Score: 185.61 E-value: 3.64e-59
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CYTB | MTH00119 | cytochrome b; Provisional |
1-103 | 6.52e-56 | |||
cytochrome b; Provisional Pssm-ID: 214425 [Multi-domain] Cd Length: 380 Bit Score: 177.02 E-value: 6.52e-56
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CYTB | MTH00131 | cytochrome b; Provisional |
1-103 | 1.65e-51 | |||
cytochrome b; Provisional Pssm-ID: 177189 [Multi-domain] Cd Length: 380 Bit Score: 165.60 E-value: 1.65e-51
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CYTB | MTH00191 | cytochrome b; Provisional |
1-103 | 3.60e-50 | |||
cytochrome b; Provisional Pssm-ID: 177239 [Multi-domain] Cd Length: 365 Bit Score: 162.01 E-value: 3.60e-50
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CYTB | MTH00074 | cytochrome b; Provisional |
1-103 | 1.12e-49 | |||
cytochrome b; Provisional Pssm-ID: 177145 [Multi-domain] Cd Length: 380 Bit Score: 161.00 E-value: 1.12e-49
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CYTB | MTH00145 | cytochrome b; Provisional |
1-103 | 3.26e-44 | |||
cytochrome b; Provisional Pssm-ID: 177203 [Multi-domain] Cd Length: 379 Bit Score: 146.97 E-value: 3.26e-44
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CYTB | MTH00156 | cytochrome b; Provisional |
1-103 | 4.85e-44 | |||
cytochrome b; Provisional Pssm-ID: 214440 [Multi-domain] Cd Length: 356 Bit Score: 145.70 E-value: 4.85e-44
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CYTB | MTH00034 | cytochrome b; Validated |
1-103 | 1.34e-40 | |||
cytochrome b; Validated Pssm-ID: 177109 [Multi-domain] Cd Length: 379 Bit Score: 137.53 E-value: 1.34e-40
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CYTB | MTH00053 | cytochrome b; Provisional |
1-103 | 3.93e-39 | |||
cytochrome b; Provisional Pssm-ID: 164624 [Multi-domain] Cd Length: 381 Bit Score: 133.68 E-value: 3.93e-39
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CYTB | MTH00016 | cytochrome b; Validated |
1-103 | 2.87e-38 | |||
cytochrome b; Validated Pssm-ID: 177102 [Multi-domain] Cd Length: 378 Bit Score: 131.34 E-value: 2.87e-38
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CYTB | MTH00022 | cytochrome b; Validated |
1-103 | 1.29e-36 | |||
cytochrome b; Validated Pssm-ID: 164595 [Multi-domain] Cd Length: 379 Bit Score: 127.12 E-value: 1.29e-36
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cytochrome_b_C | cd00290 | Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ... |
1-103 | 1.32e-34 | |||
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD. Pssm-ID: 238179 [Multi-domain] Cd Length: 147 Bit Score: 115.82 E-value: 1.32e-34
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CYTB | MTH00224 | cytochrome b; Provisional |
1-103 | 8.87e-33 | |||
cytochrome b; Provisional Pssm-ID: 164767 [Multi-domain] Cd Length: 379 Bit Score: 116.94 E-value: 8.87e-33
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Cytochrom_B_C | pfam00032 | Cytochrome b(C-terminal)/b6/petD; |
41-103 | 8.90e-28 | |||
Cytochrome b(C-terminal)/b6/petD; Pssm-ID: 459640 [Multi-domain] Cd Length: 101 Bit Score: 97.16 E-value: 8.90e-28
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QcrB/PetB | COG1290 | Cytochrome b subunit of the bc complex [Energy production and conversion]; |
1-103 | 6.21e-25 | |||
Cytochrome b subunit of the bc complex [Energy production and conversion]; Pssm-ID: 440901 [Multi-domain] Cd Length: 393 Bit Score: 96.01 E-value: 6.21e-25
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CYTB | MTH00033 | cytochrome b; Provisional |
2-102 | 1.86e-24 | |||
cytochrome b; Provisional Pssm-ID: 133672 [Multi-domain] Cd Length: 383 Bit Score: 94.62 E-value: 1.86e-24
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CYTB | MTH00086 | cytochrome b; Provisional |
1-80 | 2.75e-20 | |||
cytochrome b; Provisional Pssm-ID: 177151 [Multi-domain] Cd Length: 355 Bit Score: 83.07 E-value: 2.75e-20
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CYTB | MTH00046 | cytochrome b; Validated |
3-79 | 3.24e-19 | |||
cytochrome b; Validated Pssm-ID: 177121 [Multi-domain] Cd Length: 355 Bit Score: 80.03 E-value: 3.24e-19
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petD | CHL00058 | cytochrome b6/f complex subunit IV |
41-101 | 7.28e-10 | |||
cytochrome b6/f complex subunit IV Pssm-ID: 176998 Cd Length: 160 Bit Score: 52.70 E-value: 7.28e-10
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PetD | COG5679 | Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ... |
41-78 | 5.12e-09 | |||
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; Pssm-ID: 444393 [Multi-domain] Cd Length: 161 Bit Score: 50.56 E-value: 5.12e-09
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cytb6/f_IV | TIGR01156 | cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ... |
41-78 | 2.29e-08 | |||
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis] Pssm-ID: 130224 [Multi-domain] Cd Length: 159 Bit Score: 48.64 E-value: 2.29e-08
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Blast search parameters | ||||
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