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Conserved domains on  [gi|2236557301|gb|UQH66439|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Quiscalus mexicanus x Quiscalus quiscula]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.57e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 2.57e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   1 QASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  81 WDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 161 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 241 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNI 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330
                  ....*....|....*...
gi 2236557301 321 MIAILTTVSVMLLPISPM 338
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPM 341
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.57e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 2.57e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   1 QASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  81 WDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 161 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 241 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNI 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330
                  ....*....|....*...
gi 2236557301 321 MIAILTTVSVMLLPISPM 338
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPM 341
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 1.86e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 1.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  20 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  88 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSAAL 161
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAVMTATVFL-TLNTIKVLKLSTLMTA----WT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2236557301 233 KIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-295 6.61e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.43  E-value: 6.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  11 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 88
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  89 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNP---T 149
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 150 LLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAVMTATVFLTLNTIK----- 220
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2236557301 221 VLKLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAY 295
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-294 1.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  11 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  90 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPS----LNPTL 150
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 151 LTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAVMTATVFLTLNTIKVLK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2236557301 224 ---LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLA 294
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 2.57e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 464.30  E-value: 2.57e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   1 QASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQ 80
Cdd:MTH00112    4 HAKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQ 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  81 WDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAA 160
Cdd:MTH00112   84 WDITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTL 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 161 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAM 240
Cdd:MTH00112  164 IGGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTT 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 241 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNI 320
Cdd:MTH00112  244 LMLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNT 323

                         330
                  ....*....|....*...
gi 2236557301 321 MIAILTTVSVMLLPISPM 338
Cdd:MTH00112  324 LTATLTTLSTLLLPLSPM 341
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 5-337 1.81e-136

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 391.09  E-value: 1.81e-136
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   5 IFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT 84
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  85 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSlNPTLLTTLAILSAALGGW 164
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 165 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAMLLLT 244
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 245 LLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNIM-IA 323
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTQLTLpLA 326

                         330
                  ....*....|....
gi 2236557301 324 ILTTVSVMLLPISP 337
Cdd:MTH00135  327 ISTTATLMLLPLTP 340
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 2-337 6.37e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 382.35  E-value: 6.37e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   2 ASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 81
Cdd:MTH00070    5 ALSILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  82 DITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAAL 161
Cdd:MTH00070   85 TIMNMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAML 241
Cdd:MTH00070  165 GGWGGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMM 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 242 LLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNIM 321
Cdd:MTH00070  245 MLTLLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNL 324

                         330
                  ....*....|....*.
gi 2236557301 322 IAILTTVSVMLLPISP 337
Cdd:MTH00070  325 LSLTIILSLMLLPITP 340
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 2-338 1.12e-117

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 343.75  E-value: 1.12e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   2 ASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 81
Cdd:MTH00105    5 ILIIIYLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  82 DITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAAL 161
Cdd:MTH00105   85 TITKLTNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAML 241
Cdd:MTH00105  165 GGWGGLNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLI 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 242 LLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPhTTNHMK-QWR-TNKPTN 319
Cdd:MTH00105  245 LLTLLSLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPM 323

                         330
                  ....*....|....*....
gi 2236557301 320 IMIAILTTVSVMLLPISPM 338
Cdd:MTH00105  324 TLLPTLIILSTMLLPLTPM 342
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 3-337 1.71e-99

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 297.27  E-value: 1.71e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   3 SLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWD 82
Cdd:MTH00200    6 LPLFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWG 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  83 ITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAALG 162
Cdd:MTH00200   86 ISEMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 163 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAMLL 242
Cdd:MTH00200  166 GWGGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLG 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 243 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNIMI 322
Cdd:MTH00200  246 LTLLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLV 325

                         330
                  ....*....|....*
gi 2236557301 323 AILTTVSVMLLPISP 337
Cdd:MTH00200  326 GLLLLLSILGLPLTP 340
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-333 2.47e-80

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 248.31  E-value: 2.47e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   3 SLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWD 82
Cdd:MTH00041    6 LIFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWS 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  83 ITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAALG 162
Cdd:MTH00041   86 INGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVG 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 163 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAMLL 242
Cdd:MTH00041  166 GWGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFI 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 243 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNIMI 322
Cdd:MTH00041  246 LSILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYG 325

                         330
                  ....*....|.
gi 2236557301 323 AILTTVSVMLL 333
Cdd:MTH00041  326 VILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 3-338 3.29e-57

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 188.49  E-value: 3.29e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   3 SLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWhtgqwd 82
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  83 ITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTspsLNPTLLTTLAILSAALG 162
Cdd:MTH00160   81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILLSYL---INNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 163 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAMLL 242
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 243 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTNHMKQWRTNKpTNIMI 322
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNMFFLLFILIMSSLITLYFYLRISY-SSLMLNYNKNKWNLKKKKNK-FSLIL 315

                         330
                  ....*....|....*.
gi 2236557301 323 AILTTVSVMLLPISPM 338
Cdd:MTH00160  316 NFLSFISLFGLILSSL 331
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 3-307 2.36e-45

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 157.63  E-value: 2.36e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   3 SLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSmtnawhTGQWD 82
Cdd:MTH00011    8 MFLFSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWS 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  83 ITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAILSAALG 162
Cdd:MTH00011   82 FPSLLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAG 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 163 GWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTLMTAWTKIPALNAMLL 242
Cdd:MTH00011  162 GLGGMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLF 241

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2236557301 243 LTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYcTTITLPPHTTN 307
Cdd:MTH00011  242 IMLLSLGGLPPFTGFMPKLMAIETLTSNSMILILLVLIVGSLMNLFYYLNLIF-NFMYLSPTFSS 305
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 2-299 8.36e-45

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 155.81  E-value: 8.36e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   2 ASLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW 81
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  82 DITqlthptscLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNP-TLLTTLAILSAA 160
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 161 LGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTiKVLKLSTLMTAWTKIPALNAM 240
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSLWS-GDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2236557301 241 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTI 299
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSPLLLILLLLLGSLISLFFYLSVFFSSFL 294
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 5-335 5.30e-37

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 135.18  E-value: 5.30e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   5 IFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTgqwdit 84
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  85 qLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLymTSPSLNPTLLTTLAILSAALGGW 164
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLIL--AFNSSSFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 165 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKLSTlMTAWTKIPALNAMLLLT 244
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQ-QYSNPESMSSNLVFLGL 231

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 245 LLSLAG-LPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAYCTTItlppHTTNHMKQWRTNKPTNIMIA 323
Cdd:MTH00197  232 SFLSLGgLPPLSGFFLKWLILTSLLSSNISLITFMLILSTCFSLYYYLSLAYKSLI----LSNWMINFLMKINLLYSGLF 307

                         330
                  ....*....|....
gi 2236557301 324 ILTT--VSVMLLPI 335
Cdd:MTH00197  308 ILLMmmLPLLMIFT 321
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 20-265 1.86e-26

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 106.24  E-value: 1.86e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  20 SNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQL-----------T 87
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  88 HPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT------LLTTLAILSAAL 161
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSspfiqqILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAVMTATVFL-TLNTIKVLKLSTLMTA----WT 232
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLcAGSVIYRRVHTRNIRDygglAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2236557301 233 KIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 265
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 10-264 1.86e-25

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 104.73  E-value: 1.86e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  10 LLLGTTITISSNHWIMAWTGLEINTLAILPLI-SKSHHPRAIEAATKYFLTQAAASALVLFS-------------SMTNA 75
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  76 WHTGQWDITQLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNptLLTTLA 155
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILVSIGLNVN--ILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 156 ILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIII----IYNPKLTLLNFYLYAVMTATVFLTLNTIKVLK--LSTLMT 229
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFSIILALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*
gi 2236557301 230 AWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLII 264
Cdd:MTH00196  240 LSRRLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 11-295 6.61e-25

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 104.43  E-value: 6.61e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  11 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLF-SSMTNAWhTGQWDITQLTH 88
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIAA 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  89 PTS------------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNP---T 149
Cdd:COG1007   191 ALAagganspllllgLVLVLAGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 150 LLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAVMTATVFLTLNTIK----- 220
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTPLGVsaALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2236557301 221 VLKLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAY 295
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVIAVLNSVISAYYYLRVVK 425
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
11-293 1.22e-22

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 97.97  E-value: 1.22e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  11 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVL--------------FSSMTNA 75
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLygmsllygatgslsFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  76 WHTGQWDITQLThpTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKL----PPITLLYMTSPSLNPT-- 149
Cdd:PRK05777  193 LADGSGNSLLLL--FGLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKIaafaVLLRLLVVAFGGLSEDwq 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 150 -LLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTL--LNFYL--YAVMTATVFLTLNTIK---- 220
Cdd:PRK05777  271 qVLAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLRrkgg 350

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2236557301 221 -VLKLSTL-MTAWTKiPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRL 293
Cdd:PRK05777  351 eAESISDFaGLSKRS-PLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVIGVLNSAIGAFYYLRV 424
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 10-264 2.19e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 97.39  E-value: 2.19e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  10 LLLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDI----T 84
Cdd:MTH00199  106 VALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSIqginS 185

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  85 QLTHPTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTtlAILSAALGGW 164
Cdd:MTH00199  186 ILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSIIYGAI 263

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 165 MGLNQTQIRKILAFSSISHLGW----MAIIIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLK--LSTLMTAWTKIPALN 238
Cdd:MTH00199  264 GALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRKNPVIA 343

                         250       260
                  ....*....|....*....|....*.
gi 2236557301 239 AMLLLTLLSLAGLPPLTGFLPKWLII 264
Cdd:MTH00199  344 LTLALTFLSIAGIPPLAGFLSKWLIL 369
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 11-294 1.28e-21

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 95.01  E-value: 1.28e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  11 LLGTTITISSNHWIMAWTGLEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHP 89
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  90 TSCLILT------------SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLP---PITLLYMTSPS----LNPTL 150
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKIAifaVFLRLFLYILFgfseAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 151 LTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAVMTATVFLTLNTIKVLK--- 223
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2236557301 224 ---LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLA 294
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGLYWLAVIAVLTSVIGAFYYLRVV 425
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 12-264 6.76e-16

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 78.36  E-value: 6.76e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  12 LGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAI---------EAATKYFLTQAAASALVLFSSMTNAWHTGQ-- 80
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  81 --WDITQLTHPTS----------CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLymTSPSLNP 148
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 149 TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAVM-------TATVFLTL----- 216
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYAVTylvsalaSFTVICTLeefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2236557301 217 -------------NTIKVLKLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLII 264
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 10-276 5.78e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.18  E-value: 5.78e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  10 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH- 88
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  89 ---------PTSCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIM-KLPP------ITLLYMTSPSLNP-TLL 151
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLtKVGVyailrvLTLLFGADPALFLgTLL 275

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 152 TTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AVMTATVFLTLNTIKVL----K 223
Cdd:COG0651   276 LVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHllnhALAKALLFLAAGAIERAtgtrD 355

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2236557301 224 LSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAA 276
Cdd:COG0651   356 LDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLA 408
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-260 1.77e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.80  E-value: 1.77e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   3 SLIFTTSLLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHP-RAIEAATKYFLTQAAASALVL--FSSM--TNAWH 77
Cdd:CHL00049  113 FLLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVygFSWLygLSGGE 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  78 TGQWDI------TQLTHPTSCLI----LTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL----LYMTS 143
Cdd:CHL00049  193 IELQEIvnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGSPTPVVAFLSVTSKVAASALatriFDIPF 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 144 PSLNP---TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIII-------YNPKLTLLNFYLyavmtatvF 213
Cdd:CHL00049  273 YFSSNewhLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYI--------F 344

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2236557301 214 LTLNTIKVLKLSTLMTA----------WTKIPALNAMLLLTLLSLAGLPPLTGFLPK 260
Cdd:CHL00049  345 MNLGTFACIVLFGLRTGtdnirdyaglYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
47-189 1.70e-12

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 68.15  E-value: 1.70e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  47 PRAIEAATKYFLTQAAASALVLF-SSMTNAWHTGQwdiTQL--------THPTSCLILT-----SAIAMKLGLVPFHFWF 112
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 113 PEVLQGSPLTTGLLLSTIMKLP----PITLLYMTSPSLNP---TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLG 185
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKAAgfalAIRLLVTAFPSFDEqwkLLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313


                  ....
gi 2236557301 186 WMAI 189
Cdd:PRK02504  314 FVMI 317
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 46-189 7.72e-11

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 62.79  E-value: 7.72e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  46 HPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW--DITQLTH-----PTSCLILTS---AIAMKLGLVPFHFWFPEV 115
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 116 LQGSPLTTGLLLSTIM-KLP-------PITLLYMTSPSLNPTLLTtLAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 187
Cdd:COG1008   236 HVEAPTAGSVLLAGVLlKMGgygllrfALPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGFV 314


                  ..
gi 2236557301 188 AI 189
Cdd:COG1008   315 LL 316
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-263 2.53e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.18  E-value: 2.53e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  30 LEINTLAILPLIS-KSHHPRAIEAATKYFLTQAAASALVLFS---------SMTNAWHTGQWDITQLTHPTSCL-ILTSA 98
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  99 IAMKLGLVPFHFWFPEVLQGSP--LTTGLLLSTIMKLPPI--TLLYMTSPSLNPT----LLTTLAILSAALGGWMGLNQT 170
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYPAAPssISAMLLVIKQAGLYALarVLFSIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 171 QIRKILAFSSISHLGWM------AIIIIYNPKLT----------LLNFYLYAVMTATVFLT-------LNTIKVLKLSTL 227
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMAsygeialaggIYHIVNHALYKALLFLTagaviyeTGTRNLNELGGL 389

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2236557301 228 MtawTKIPALNAMLLLTLLSLAGLPPLTGFLPKWLI 263
Cdd:PRK08376  390 A---RTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 288-337 6.27e-09

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 51.49  E-value: 6.27e-09
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2236557301 288 FFYLRLAYCTTITLPPHTTNHMKQWRTNKPTNIM-IAILTTVSVMLLPISP 337
Cdd:pfam06444   1 FFYLRLSYSTTLTLFPNTNNSKMKWRFNSTKNTLlLPTLTTLSILLLPLTP 51
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 47-191 1.95e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 52.25  E-value: 1.95e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  47 PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQW----DITQLTHPTSC-----LILTSAIAMKLGLVPFHFWFPEV-- 115
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 116 ---LQGSPLTTGLLLST--------IMKLPPITLLYMTspslnpTLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHL 184
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMgtygflrfNLPLFPDASLYFA------PVLAALGVIAIIYGALIALAQTDIKRLIAYSSISHM 305


                  ....*..
gi 2236557301 185 GWMAIII 191
Cdd:TIGR01972 306 GFVLLGI 312
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 93-260 7.11e-07

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 51.08  E-value: 7.11e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  93 LILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL------YMTSPSLNPTLLtTLAILSAALGGWMG 166
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMVKAGIYLVarlapgFADVPVWRPTVL-VLGLATMLLGGWRA 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 167 LNQTQIRKILAFSSISHLGWMAIIIIYNPK------LTLLnfYLYAVMTATVFLTLNTI-------KVLKLSTLmtaWTK 233
Cdd:PRK12644  286 LRQHDLKLILAYGTVSQLGFLTVLVGIGTRdaalagLAML--LAHALFKAALFLVVGIIdhstgtrDIRKLSGL---GRR 360

                         170       180
                  ....*....|....*....|....*..
gi 2236557301 234 IPALNAMLLLTLLSLAGLPPLTGFLPK 260
Cdd:PRK12644  361 QPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 31-272 1.75e-06

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 49.61  E-value: 1.75e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  31 EINTLAILPLISKSHHpRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDIT-------QLTHPTSCLI----LTSAI 99
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 100 AMKLGLVPFHFWFPE-----------VLQGSPLTTG-----LLLSTIM--KLPPITLLYMTSPSLNpTLLTTLAILSAAL 161
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygflLVLYVLPgtKLFSEFGTYRGVPLFN-YILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLT----LLNFYLYAVMTATVFLTLNTI----KVLKLSTLMTAWTK 233
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGTSLGfaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2236557301 234 IPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQELTKQEM 272
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGM 404
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 10-191 3.24e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.60  E-value: 3.24e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  10 LLLGTTITISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAA------SALVLFSSMTNAWHTGQWDI 83
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  84 TQLTHPT----------SCLILTSAIAMKLGLVPFHFWFPEVLQGSP-LTTGLLLSTIMKLPPITLLYMTS-------PS 145
Cdd:PRK08676  191 TELAAHAsllspsvlgaSFLFIFIGFLAKSGLVPFHTWLPAAYAKAPsVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*.
gi 2236557301 146 LNPTLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIII 191
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGI 316
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-295 3.46e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.34  E-value: 3.46e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-SMTNAwHTGQWDITQL--------THPTSCLILTSAIA 100
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLagalaenpTVVTAFGFVLLALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 101 MKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLY-----------MTSPSLNpTLLTTLAILSAALGGWMGLNQ 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIriyftvfggdfRFALGLG-WLLAVLALLSMLVGSLAALGQ 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 170 TQIRKILAFSSISHLGWMAIIIIYNPKLTLLN--FYL--YAVMTATVFLTLNTIKVL----KLSTLMTAWTKIPALNAML 241
Cdd:PRK08375  293 DDVKRVLAYSTVSQMGYILLGLALLTPLALAAglLHLlhHALMKGALFLAAGAIEVTygtrRLSELSGLGRRMPLTAAAF 372

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2236557301 242 LLTLLSLAGLPPLTGFLPKWLIIQELTKQEMAPAATLISLLSLLSLFFYLRLAY 295
Cdd:PRK08375  373 AVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAVLLASSLLALLYFLRIWY 426
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 4-187 3.95e-06

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 48.22  E-value: 3.95e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   4 LIFTTSLLLgttITISSNHWIMaWTGLEINTLAILPLISKSHH-PRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWD 82
Cdd:COG1009   118 LLFMAAMLG---LVLSDNLLLL-FVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVGDLGLLLGILLLGAIAGTLN 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  83 ITQL-----THPTSCLILTSAIAM------KLGLVPFHFWFPEVLQG-SPLTTgLLLSTIMKLPPITLLYMTSP--SLNP 148
Cdd:COG1009   194 FSELlaaapTILSSPLLTLILLLLllgafgKSAQFPLHFWLPDAMEGpTPVSA-LLHAATMVKAGVYLLARLSPlfALSP 272

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2236557301 149 TLLTTLAILSAA---LGGWMGLNQTQIRKILAFSSISHLGWM 187
Cdd:COG1009   273 VWLTVVAIIGAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 5-189 2.10e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 46.08  E-value: 2.10e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301   5 IFTTSLLLgttiTISSNHWIMAWTGLEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSM---TNAWhtgqw 81
Cdd:PRK06458  116 LFLFTMLL----ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTIlvyANAA----- 186

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  82 diTQLTHPTSCLILTSAIAM----------------------KLGLVPFHFWFPEVLQGSP-----LTTGLLLST-IMKL 133
Cdd:PRK06458  187 --TVMGDGEMAILWTELLKHaslldptlmklafvflligfgtKVGLFPMHAWLPDAHSEAPspvsaLLSGVLLNVaLYAV 264

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2236557301 134 PPITLLYMTSPSLNP--TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAI 189
Cdd:PRK06458  265 LRYYILIDAAIGSDFpgRLLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 47-191 2.24e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.96  E-value: 2.24e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  47 PRAIEAATKYFLTQAAASALVLFSSMTNAWH----TGQWDITQLTH---PTSCLILT-----SAIAMKLGLVPFHFWFPE 114
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYLVVVyynaTGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 115 VLQGSPLTTGLLLSTIM-KLPPITLLYMTSPsLNP-------TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGW 186
Cdd:PRK05846  237 AHVQAPTAGSVLLAGILlKMGAYGLLRFSLP-LFPdashefaPIIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMGF 315


                  ....*
gi 2236557301 187 MAIII 191
Cdd:PRK05846  316 VTLGI 320
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
52-187 4.14e-05

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 45.08  E-value: 4.14e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  52 AATKYFLTQAAASALVLFSSMTNAWHTG-------QWDITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEV-LQGSP 120
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2236557301 121 LTTGLLLSTIMKLPPITLL------YMTSPSLNPTLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWM 187
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYI 310
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 102-268 5.77e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 44.95  E-value: 5.77e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 102 KLGLvpfHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPTLLTTLAI-----LSAALGGWMGLNQTQIRKIL 176
Cdd:MTH00032  241 QLGL---HTWLPDAMEGPTPVSALIHAATMVTAGVFLMIRSFPLFEKAPLTLLIItifgaLTAFFAATVGLVQNDLKKVI 317

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 177 AFSSISHLGWMAIIIIY--NPKLTLLNFYLYAVMTATVFLTLNTI---------KVLKLSTLMTAwtkIPALNAMLLLTL 245
Cdd:MTH00032  318 AYSTCSQLGYMVLIIGIegSHNVGLFHLVNHAFFKALLFLSAGSVihsttvdeqDMRKMGGLIHS---IPFTYTMMLIGS 394

                         170       180
                  ....*....|....*....|...
gi 2236557301 246 LSLAGLPPLTGFLPKWLIIqELT 268
Cdd:MTH00032  395 FSIMGLPYLTGFYSKDLIL-ELT 416
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 52-185 8.46e-05

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 44.34  E-value: 8.46e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  52 AATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPT-----SCLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLL 126
Cdd:PRK08667  163 AGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAgilslVFLLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSAL 242

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2236557301 127 LSTIM-KLPPITLLYMTSPSLNP-----TLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLG 185
Cdd:PRK08667  243 MSGVMlKVAVYGLVRFLMDVLSPelwwgVLILLAGSISALLGVIYALKEHDLKGLLAYSSIENIG 307
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
52-265 1.06e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 43.93  E-value: 1.06e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  52 AATKYFLTQAAASALVLFSSMTNAWHTGQWD------ITQ-LTHPTSCLILTSAI---AMKLGLVPFHFWFPEV-LQGSP 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSfdydaiSTQnLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAyTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 121 LTTGLLLSTIMKLPPITL------LYMTSPSLNPTLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN 194
Cdd:PRK07363  238 AVAILLGGVLAKLGTYGLlrfglqLFPQTWSLVAPGLAIIGTISVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAG 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 195 PKLTLLN---------------FYLYAVMTATVfltlNTIKVLKLSTLMTAWTKIPALNAMLLLTLLSLAGLPPLTGFLP 259
Cdd:PRK07363  318 TQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFVA 393


                  ....*.
gi 2236557301 260 KWLIIQ 265
Cdd:PRK07363  394 EFIVFQ 399
PRK12650 PRK12650
DUF4040 family protein;
77-191 1.79e-04

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 43.49  E-value: 1.79e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  77 HTGQW-DITQLTHPTSCLILTSAIAmKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSL--NPT---L 150
Cdd:PRK12650  196 HSDVWaEKPGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSPVFhdVAVwnwL 274

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|.
gi 2236557301 151 LTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIII 191
Cdd:PRK12650  275 LIIVGMITALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATI 315
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
89-265 2.26e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 42.63  E-value: 2.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  89 PTSCLILTSAIAMKLGLVPFhFWFPEVLQGSPLTTGLLLSTIMKLPPI-------TLLYMTSPSLNPTLLTTLAILSAAL 161
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPAAYHTPNTEVAALFAALLTKVGIyalirvfTLLFPQERELLHPLLATMAAITMVI 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 162 GGWMGLNQTQIRKILAFSSISHLGWM-AIIIIYNPK-LTLLNFYLY---AVMTAtVFLTLNTIKVL----KLSTLMTAWT 232
Cdd:PRK12663  286 GALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVhdmVVKTA-LFLIAGSLVRLtgyrSLQYLGGLYR 364

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2236557301 233 KIPALNAMLLLTLLSLAGLPPLTGFLPKWLIIQ 265
Cdd:PRK12663  365 KEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 52-191 2.65e-04

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 42.71  E-value: 2.65e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  52 AATKYFLTQAAASALVLFSSMTNAWHTGQ--WDITQLTH---PTSCLILTS-----AIAMKLGLVPFHFWFPE------- 114
Cdd:PRK12561  138 AATKFILYTALASIFILVAGLALALSGDTftFDLAELGAksyPLALELLLYagfliAFGVKLPIFPLHTWLPDahgeasa 217

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 115 ----VLQGSPLTTG--LLLSTIMKLPPITLLYMtSPslnptLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLGWMA 188
Cdd:PRK12561  218 pvsmILAGVLLKMGgyALIRFNVQMLPDAHVYF-AP-----ALAILGVVNIIYGALNAFAQDNVKRRLAYSSVSHMGFVL 291


                  ...
gi 2236557301 189 III 191
Cdd:PRK12561  292 LGI 294
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 45-260 2.77e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 42.89  E-value: 2.77e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  45 HHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTS---------------CLILTSAiAMKLGLVPFH 109
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGA-AAKSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 110 FWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSPSLNPT-----LLTTLAILSAALGGWMGLNQTQIRKILAFSSISHL 184
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 185 GWMAIIIIYNPK------LTLLNFYL--YAVMTATVFLTLN-------TIKVLKLSTLMTawtKIPALNAMLLLTLLSLA 249
Cdd:PRK12649  315 AYLMTMYGYTTYhepglgVAAATFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                         250
                  ....*....|.
gi 2236557301 250 GLPPLTGFLPK 260
Cdd:PRK12649  392 GIPPLNGFLSK 402
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-268 2.90e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 42.25  E-value: 2.90e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTH--PTSCLILTSAIAMKLGLVP 107
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 108 FHFWFPEVLQGSPLTTGLLLSTIM---KLPPITLLYMTSPSLNPtLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHL 184
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVvkaGVFPLVRCALDVPGLDL-IVRIFGVGTALLGVLFALLEKDLKRMLAFSTISQL 281

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 185 GWmaiiIIYNPKLTLLNFYLYAVMTATVFLTLNTIKVLKL----STLMTAWTKIPALNAmllltLLSLAGLPPLTGFLPK 260
Cdd:PRK07234  282 GF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFteliSQMLGIGKWIPLTMA-----SFSIAGFPLLAGFVSK 352


                  ....*...
gi 2236557301 261 WLIIQELT 268
Cdd:PRK07234  353 VLTLKNLL 360
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 106-263 3.26e-04

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 42.60  E-value: 3.26e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 106 VPFHFWFPEVLQG-SPLTTGLLLSTIMKLPpITLLYMTSPSLNPTLL--TTLAILSAA---LGGWMGLNQTQIRKILAFS 179
Cdd:PRK12647  212 FPFHFWLPNAMEApTPVSAYLHSATMVKAG-IYLLARLNPVLGGTPLwqTILPLFGGLtmlTGALLAVRQTDLKLILAYS 290

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 180 SISHLGWMAIIIIYNPKLTLLNFYLY----AVMTATVFLTLNTIK-------VLKLSTLMTA--WTKIPALNAmllltLL 246
Cdd:PRK12647  291 TVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGLRRAmpITAAAALLA-----AL 365

                         170
                  ....*....|....*..
gi 2236557301 247 SLAGLPPLTGFLPKWLI 263
Cdd:PRK12647  366 SMAGLPPLFGFLAKELI 382
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 92-265 4.08e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 41.99  E-value: 4.08e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  92 CLILTSAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP--SLNPTLL---TTLAILSAALGGWMG 166
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPlfEQAPLALiivTIVGSLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 167 LNQTQIRKILAFSSISHLGWMAIII-IYNPKLTLLNFYLYAVMTATVFLTLNTI--------KVLKLSTLMTAwtkIPAL 237
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                         170       180
                  ....*....|....*....|....*...
gi 2236557301 238 NAMLLLTLLSLAGLPPLTGFLPKWLIIQ 265
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
49-187 5.67e-04

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 41.55  E-value: 5.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  49 AIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQLTHPTSCLILTSAIAMKLGLV----------------PFHFWF 112
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 113 PEVLQGSPLTTGLLLSTIMKLPPITLLYMTSP--SLNPTLLTTLAI---LSAALGGWMGLNQTQIRKILAFSSISHLGWM 187
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVARMYPvfEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 98-192 6.54e-04

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 41.45  E-value: 6.54e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  98 AIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTI-MKLPPITLLYMTSP-------SLNPTLLtTLAILSAALGGWMGLNQ 169
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGIlLKLGGYGLVRLSWPilplgaqNLAPAVI-AMGIVGIVYGSFATCRQ 317

                          90       100
                  ....*....|....*....|...
gi 2236557301 170 TQIRKILAFSSISHLGWMAIIII 192
Cdd:MTH00226  318 IDVKRLVAYSSVAHMGLVSITLV 340
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 30-264 9.43e-04

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 40.87  E-value: 9.43e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  30 LEINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFS-----SMTNAWHTGqwDITQLTHP--------TSCLILT 96
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  97 SAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITL------------LYMTSPSLNpTLLTTLAILSAALGGW 164
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLiirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 165 MGLNQTQIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLY----AVMTATVFLTLNTIK----VLKLSTLMTAWTKIPA 236
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVSGSISyhfgTTKLEDCLNLWKSMPK 375

                         250       260
                  ....*....|....*....|....*...
gi 2236557301 237 LNAMLLLTLLSLAGLPPLTGFLPKWLII 264
Cdd:PRK12662  376 ITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
31-265 2.75e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 2.75e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  31 EINTLAILPLISKSHHPRAIEAATKYFLTQAAASALVLFSSMTNAWHTGQWDITQ-----LTHPTSCLILTSAIAMKLGL 105
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 106 V------PFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLL-------YMTS--PSLNpTLLTTLAILSAALGGWMGLNQT 170
Cdd:PRK06277  210 LygsglpPFHTIKSDIYAKAKPFGSALLQTFSKFVLVALMlvifklfGGLSyfPSAQ-GVLIALSVLAMVFGVVMALLQT 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301 171 QIRKILAFSSISHLGWMAIIIIYNPKLTLLNFYLYAV----MTATVFLTLNTI----KVLKLSTLMTAWTKIPALNAMLL 242
Cdd:PRK06277  289 DYKRLLAYHAISQGGYVAAGLALGTPLGIVAGIFHAInhviYKSALFLGAGIVsyrtKTSNLRKLGGLLPVMPVVAFMVL 368

                         250       260
                  ....*....|....*....|...
gi 2236557301 243 LTLLSLAGLPPLTGFLPKWLIIQ 265
Cdd:PRK06277  369 CAKLAISGVPPFNGFQSKLMLAQ 391
ND5 MTH00066
NADH dehydrogenase subunit 5; Provisional
 72-214 5.08e-03

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214416 [Multi-domain]  Cd Length: 598  Bit Score: 38.74  E-value: 5.08e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  72 MTNAW---HTGQWDITQL-------THPTSCLILtsAIAMKLGLVPFHFWFPEVLQGSPLTTGLLLSTIMKLPPITLLYM 141
Cdd:MTH00066  182 LSMAWlamNTNSWELQQIfllndnsTLPLLGLIL--AAAGKSAQFGLHPWLPAAMEGPTPVSALLHSSTMVVAGIFLLIR 259

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2236557301 142 TSPSL--NPTLLTT---LAILSAALGGWMGLNQTQIRKILAFSSISHLGWMAIIIIYN-PKLTLLNFYLYAVMTATVFL 214
Cdd:MTH00066  260 FHPLLenNQTALTIclcLGALTTLFTAACALTQNDIKKIVAFSTSSQLGLMMVTIGLNqPQLAFFHICTHAFFKAMLFL 338
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 50-185 5.27e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 38.51  E-value: 5.27e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2236557301  50 IEAATKYFLTQAAASALVLFSSMTNAWHTGQWD-----ITQLTHPTSCLILTS---AIAMKLGLVPFHFWFPEVLQGSPL 121
Cdd:MTH00204  162 VRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDyqillNIKLPLSIQKWLLVGfflSLAVKIPQIPFHIWLPQAHVEAPV 241

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2236557301 122 TTGLLLSTI-MKLPPITLLYMTSPSL-------NPtLLTTLAILSAALGGWMGLNQTQIRKILAFSSISHLG 185
Cdd:MTH00204  242 AGSVILAGIlLKLGGYGFLRFSWPLFpaaseyfAP-LIVMLSVIAVIYGSLTTCRQVDFKRLIAYSSVAHMG 312
PRK06590 PRK06590
NADH:ubiquinone oxidoreductase subunit L; Reviewed
 145-187 6.27e-03

NADH:ubiquinone oxidoreductase subunit L; Reviewed


Pssm-ID: 235836 [Multi-domain]  Cd Length: 624  Bit Score: 38.22  E-value: 6.27e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 2236557301 145 SLNPTLLTTLAILSAA---LGGWMGLNQTQIRKILAFSSISHLGWM 187
Cdd:PRK06590  275 ELSPEALLFVAIVGAVtalFAAFIGLVQTDIKRVLAYSTMSQLGYM 320
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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