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Conserved domains on  [gi|2250083682|gb|URW97240|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Crocidura foetida doriae]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.37e-68

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083682  81 TNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.37e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083682  81 TNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 6.93e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.19  E-value: 6.93e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  18 VMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMT-IMALALIF 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGfVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2250083682  97 LLAMSLAYEWLHQGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 3.82e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 75.93  E-value: 3.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  12 LLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMTIMA 91
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIE 94

                          90       100
                  ....*....|....*....|...
gi 2250083682  92 -LALIFLLAMSLAYEWLHQGLEW 113
Cdd:COG0838    95 mLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.37e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.37e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083682  81 TNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 3.42e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 141.98  E-value: 3.42e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMT-NTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136    1 MNLITTILTiTIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083682  80 QTNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.02e-43

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 138.20  E-value: 1.02e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   3 MFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083682  83 NLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 3.06e-41

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 131.93  E-value: 3.06e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083682  81 TNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 4.35e-36

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 118.93  E-value: 4.35e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTL-LASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00042    1 MTNLIFFLLIILiLTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPAT 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083682  80 QTNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00042   81 LITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 2.22e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 106.91  E-value: 2.22e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   3 MFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2250083682  83 NLNMMtiMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00203   84 SLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 6.93e-29

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 100.19  E-value: 6.93e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  18 VMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMT-IMALALIF 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFGfVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2250083682  97 LLAMSLAYEWLHQGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 1.92e-25

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 92.23  E-value: 1.92e-25
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083682  80 QTNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 3-113 1.24e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 87.14  E-value: 1.24e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   3 MFLALMTNTLLASLLVMIAFWL--PQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00161    1 MILIILLIILLISIILMILASLlsKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083682  81 TNNLNMMTIMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 2.07e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 81.96  E-value: 2.07e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYS-EKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00202    2 LLILFMSILSILISSLLFLVSWMLSFRSLMDrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083682  80 QTNNLNMMTIMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00202   82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-113 2.18e-21

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 81.68  E-value: 2.18e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00055    6 LGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083682  81 TNNLNMMTIMALALIfLLAMSLAYEWLHQGLEW 113
Cdd:MTH00055   86 QIGLFGFWVMYLFLI-ILTIGLIYEWVKGGLEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 1.39e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 79.72  E-value: 1.39e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083682  81 TNNLNMMTIMALAL-IFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00018   79 YNQIAPFGFWTMVGfLFILTLGLIYEWIKGGLEW 112
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 1-114 3.03e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 78.75  E-value: 3.03e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWL--PQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWA 78
Cdd:MTH00012    1 MSLMMIPMMISLILPPLVLGAAWVlaARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTI 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083682  79 SQTNNLNMMTIMALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:MTH00012   81 LMTSTSKTVVYTSILFLLILVIGLIHEWREGSLDWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 12-113 3.82e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 75.93  E-value: 3.82e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  12 LLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMTIMA 91
Cdd:COG0838    17 GLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFRELGWFGLIE 94

                          90       100
                  ....*....|....*....|...
gi 2250083682  92 -LALIFLLAMSLAYEWLHQGLEW 113
Cdd:COG0838    95 mLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-113 1.87e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 74.58  E-value: 1.87e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   3 MFLALMTNTLLASLLVMIAFWLPQLNIY-----SEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPW 77
Cdd:MTH00030    8 IFFSTLLGVGIILLLVSISFTLGNSRIGltkpdSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPW 85

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2250083682  78 ASQTNNLNMMTI-MALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00030   86 SIVFNQLNLFSFwIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 11-114 6.26e-18

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 72.97  E-value: 6.26e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  11 TLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMT-I 89
Cdd:PRK06602   19 IGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGWLGfV 96

                          90       100
                  ....*....|....*....|....*
gi 2250083682  90 MALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:PRK06602   97 EAMIFILVLLVGLVYLWRKGALDWE 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 12-114 5.07e-12

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 57.69  E-value: 5.07e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  12 LLASLLVMIAFWLPQL----NIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMM 87
Cdd:CHL00022   15 IISSLIPILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL--YPWAMSFDVLGVS 92

                          90       100
                  ....*....|....*....|....*...
gi 2250083682  88 T-IMALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:CHL00022   93 AfIEALIFVLILIVGLVYAWRKGALEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 4.35e-11

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 55.45  E-value: 4.35e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  33 KASPYECGFDPMGSARLP--FSMKFFLIAITFLLFDLEIALLLPlpWASQTNNLNMMTIMALALiFLLAMSLAY--EWLH 108
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMAL-FMLTVFVAYayVWRR 113


                  ....*.
gi 2250083682 109 QGLEWT 114
Cdd:PRK07928  114 GGLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-113 1.60e-08

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 48.97  E-value: 1.60e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPlpWASQ 80
Cdd:PRK07756   10 MIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVA 87

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083682  81 TNNLNMMTIMA-LALIFLLAMSLAYEWLHQGLEW 113
Cdd:PRK07756   88 YDKLGLFALIEmLIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
33-113 9.65e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 41.58  E-value: 9.65e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083682  33 KASPYECGFDPMGSARlPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMMTIMALAL-IFLLAMSLAYEWLHQGL 111
Cdd:PRK08489   47 KLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKLLGLFGLIEMLLfIVLLTIGFIYAWKKGAL 123


                  ..
gi 2250083682 112 EW 113
Cdd:PRK08489  124 EW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 2.04e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 2.04e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2250083682   1 MNMFLALMTNTLLASLLVMIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLL 73
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 2.65e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 37.57  E-value: 2.65e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2250083682  35 SPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-101 6.64e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 33.81  E-value: 6.64e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2250083682  33 KASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTNNLNMMTIMALALIFLLAMS 101
Cdd:PRK06073   40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVVALVLMYPVL 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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