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Conserved domains on  [gi|2250083946|gb|URW97485|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Crocidura suaveolens]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009567)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.38e-68

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.38e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 9.86e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 9.86e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946  18 VTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMM-ITMALALIF 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2250083946  97 LLAMSLAYEWLHQGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 1.91e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 76.70  E-value: 1.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTN 82
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2250083946  83 NLNMMITMA-LALIFLLAMSLAYEWLHQGLEW 113
Cdd:COG0838    86 ELGWFGLIEmLVFIAILLVGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 1-115 1.38e-68

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 201.32  E-value: 1.38e-68
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00106    1 MNLMLTLLTNTLLASLLVLIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQ 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00106   81 TNNLNTMLTMALLLISLLALSLAYEWTQKGLEWTE 115
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 1-115 6.75e-45

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 141.21  E-value: 6.75e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLT-NIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00136    1 MNLITTILTiTIALSLILAIVSFWLPQMTPDHEKLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLPWGD 80

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083946  80 QTNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00136   81 QLPSPLLTFFWATAVLILLTLGLIYEWLQGGLEWAE 116
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 3-115 1.02e-42

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 135.89  E-value: 1.02e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00069    2 IMLMLLISTILSLILITISFWLPLNNPDSEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLN 81

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083946  83 NLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00069   82 TPTNTLFWSTLILILLTLGLIYEWIQGGLEWAE 114
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 1-114 2.96e-40

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 129.62  E-value: 2.96e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00113    1 MNLISMLTISLALSTILTTLNFWLTQTKPDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAIN 80

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:MTH00113   81 LTTPTTTLTWATIILTLLTLGLIYEWLQGGLEWA 114
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 1-115 1.74e-35

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 117.39  E-value: 1.74e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00042    2 TNLIFFLLIILILTSLLLLAGHFLPSRSPDLEKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPPATL 81

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00042   82 ITNPSTLLPISLIFLIILTIGLVYEWVNGGLEWAE 116
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 3-113 5.10e-31

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 106.14  E-value: 5.10e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTN 82
Cdd:MTH00203    4 IMLFFLIALLLSLILLFIAFWLPKVNPDGEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWSNQLS 83

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2250083946  83 NLNMMitMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00203   84 SLSLL--LAFLFLILLTLGLIYEWLQGGLEW 112
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
18-112 9.86e-28

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 97.11  E-value: 9.86e-28
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946  18 VTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNMM-ITMALALIF 96
Cdd:pfam00507   1 LLLSRLLGPKRPNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFL--FPWAVSFRELGWFgFVEMLIFIA 78

                          90
                  ....*....|....*.
gi 2250083946  97 LLAMSLAYEWLHQGLE 112
Cdd:pfam00507  79 ILLVGLVYAWKKGALE 94
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-115 7.59e-26

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 93.00  E-value: 7.59e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIY-SEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00148    2 LSILLSLLFALILSPVLLLLGLVLSKRSYSdREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQSL 81

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2250083946  80 QTNNLNMMITMALALIFLLAMSLAYEWLHQGLEWTE 115
Cdd:MTH00148   82 GSSFSVWSLTSLFIFLLILILGLFHEWNEGSLDWVS 117
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 2-113 1.27e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 87.14  E-value: 1.27e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   2 NLFLALLTNIFLASLLVTIAFWLPQLNIYS-EKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00161    1 MILIILLIILLISIILMILASLLSKKSIMDrEKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFK 80

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083946  81 TNNLNMMITMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00161   81 TSNMMSWLITSSFFILILLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-113 3.23e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 83.89  E-value: 3.23e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYS-EKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWAS 79
Cdd:MTH00202    2 LLILFMSILSILISSLLFLVSWMLSFRSLMDrEKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLVL 81

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2250083946  80 QTNNLNMMITMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00202   82 KSSWSKGGLLGGTIFLLILIGGLIHEWKEGSLDW 115
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 1-113 7.86e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 82.84  E-value: 7.86e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQ 80
Cdd:MTH00055    6 LGIFILLLFSIGLSTVISGASYIVGVKQPDSEKVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYN 85

                          90       100       110
                  ....*....|....*....|....*....|...
gi 2250083946  81 TNNLNMMITMALALIfLLAMSLAYEWLHQGLEW 113
Cdd:MTH00055   86 QIGLFGFWVMYLFLI-ILTIGLIYEWVKGGLEW 117
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 32-114 4.02e-20

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 78.75  E-value: 4.02e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946  32 EKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTNNLNMMITMALALIFLLAMSLAYEWLHQGL 111
Cdd:MTH00012   34 EKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYTSILFLLILVIGLIHEWREGSL 113


                  ...
gi 2250083946 112 EWT 114
Cdd:MTH00012  114 DWS 116
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 3-113 1.91e-19

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 76.70  E-value: 1.91e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTN 82
Cdd:COG0838     8 ILIFLLVALGLALAMLLLSRLLGPKRPNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFL--FPWAVVFR 85

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2250083946  83 NLNMMITMA-LALIFLLAMSLAYEWLHQGLEW 113
Cdd:COG0838    86 ELGWFGLIEmLVFIAILLVGLIYAWKKGALEW 117
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 1-113 2.63e-19

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 76.25  E-value: 2.63e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQ 80
Cdd:MTH00018    1 YGLFILLIFSVVLSALFSGASYFLGVKQPDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFL--FPWCVL 78

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNMM--ITMALaLIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00018   79 YNQIAPFgfWTMVG-FLFILTLGLIYEWIKGGLEW 112
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 3-113 2.04e-18

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 74.58  E-value: 2.04e-18
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLVTIAFWLPQLNIY-----SEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPW 77
Cdd:MTH00030    8 IFFSTLLGVGIILLLVSISFTLGNSRIGltkpdSEKSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFL--FPW 85

                          90       100       110
                  ....*....|....*....|....*....|....*..
gi 2250083946  78 ASQTNNLNMM-ITMALALIFLLAMSLAYEWLHQGLEW 113
Cdd:MTH00030   86 SIVFNQLNLFsFWIVYTFLIVLAIGLAYEWIKGGLEW 122
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 7-114 6.14e-17

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 70.66  E-value: 6.14e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   7 LLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNNLNM 86
Cdd:PRK06602   15 LIVAIGLGILLLVAGKLLGPRAPDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFL--FPWAVSFREIGW 92

                          90       100       110
                  ....*....|....*....|....*....|
gi 2250083946  87 M--ITMALaLIFLLAMSLAYEWLHQGLEWT 114
Cdd:PRK06602   93 LgfVEAMI-FILVLLVGLVYLWRKGALDWE 121
ndhC CHL00022
NADH dehydrogenase subunit 3
 3-114 1.68e-10

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 53.84  E-value: 1.68e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   3 LFLALLTNIFLASLLV-----TIAFWLPQL----NIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLl 73
Cdd:CHL00022    1 MFLLYEYDIFWAFLIIsslipILAFLISGLlapiSKGPEKLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFL- 79

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2250083946  74 pLPWASQTNNLNMMITM-ALALIFLLAMSLAYEWLHQGLEWT 114
Cdd:CHL00022   80 -YPWAMSFDVLGVSAFIeALIFVLILIVGLVYAWRKGALEWS 120
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 2.53e-10

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 53.52  E-value: 2.53e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946  33 KASPYECGFDPMGSARLP--FSMKFFLIAITFLLFDLEIALLLPlpWASQTNNLNMMITMALALiFLLAMSLAY--EWLH 108
Cdd:PRK07928   37 KLEAYECGIEPTPQPAGGgrFPVKYYLTAMLFIVFDIEIVFLYP--WAVSFDALGVFGLVEMAL-FMLTVFVAYayVWRR 113


                  ....*.
gi 2250083946 109 QGLEWT 114
Cdd:PRK07928  114 GGLEWD 119
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
1-113 2.40e-09

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 50.90  E-value: 2.40e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPlpWASQ 80
Cdd:PRK07756   10 MIVLIFLLLGILLPVVALTLGRMLRPNKPSAAKATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYP--WAVA 87

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2250083946  81 TNNLNM--MITMaLALIFLLAMSLAYEWLHQGLEW 113
Cdd:PRK07756   88 YDKLGLfaLIEM-LIFVVMLLVGLAYAWKKKVLQW 121
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
4-113 8.70e-06

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 41.58  E-value: 8.70e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2250083946   4 FLALLTNIFLASLlvtIAFWLPQLNIYSEKASPYECGFDPMGSARlPFSMKFFLIAITFLLFDLEIALLlpLPWASQTNN 83
Cdd:PRK08489   21 FVAFFLTTRLARF---ISRKLAQKNTEKLKLAIYECGPEPVKQPN-RISSHFYIMALLFILFDVEIVFM--FPWAVDFKL 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2250083946  84 LNM--MITMaLALIFLLAMSLAYEWLHQGLEW 113
Cdd:PRK08489   95 LGLfgLIEM-LLFIVLLTIGFIYAWKKGALEW 125
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-73 2.12e-05

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 40.26  E-value: 2.12e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2250083946   1 MNLFLALLTNIFLASLLVTIAFWLPQLNIYSEKASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLL 73
Cdd:MTH00092    2 LVLIFVFLFTLLLLMLLYLLNFFLSVKKFDLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIVMFL 74
ND3 MTH00060
NADH dehydrogenase subunit 3; Provisional
 35-76 6.66e-04

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177132  Cd Length: 116  Bit Score: 36.41  E-value: 6.66e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2250083946  35 SPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLP 76
Cdd:MTH00060   39 SSFECGFFSSGLSENCFSFTYFFLLVFFVIFDLEISLLLNMP 80
PRK06073 PRK06073
NADH dehydrogenase subunit A; Validated
 33-101 1.82e-03

NADH dehydrogenase subunit A; Validated


Pssm-ID: 235690  Cd Length: 124  Bit Score: 35.35  E-value: 1.82e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2250083946  33 KASPYECGFDPMGSARLPFSMKFFLIAITFLLFDLEIALLLPLPWASQTNNLNMMITMALALIFLLAMS 101
Cdd:PRK06073   40 KVSRYEAGNPPTGPAKLWLPMQYYGYLLLFLTLEPIVVLLLLIAFAPYYTFRDLLLLIVVALVLMYPVL 108
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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