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Conserved domains on  [gi|2265312630|gb|UTD49240|]
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ATP synthase F0 subunit 6 (mitochondrion) [Acropora aspera]

Protein Classification

ATP synthase F0 subunit 6( domain architecture ID 10009609)

ATP synthase F0 subunit 6 is part of the mitochondrial membrane ATP synthase (F1F0 ATP synthase or Complex V), which produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-232 1.08e-120

ATP synthase F0 subunit 6; Provisional


:

Pssm-ID: 214447  Cd Length: 232  Bit Score: 342.41  E-value: 1.08e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIALTNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFF 80
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  81 FIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLG 160
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2265312630 161 VRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
 
Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-232 1.08e-120

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 342.41  E-value: 1.08e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIALTNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFF 80
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  81 FIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLG 160
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2265312630 161 VRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-229 2.59e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 176.24  E-value: 2.59e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   6 FDQFKI--VALIALTNSSMMMILVVVVVLLLFK-GVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFI 82
Cdd:TIGR01131   2 FSQFDIspITLFSLTLLSLILLLSLLIFLISSSlSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  83 VFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLGVR 162
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2265312630 163 LAANLSAGHLLFAILAGFGFNMLvaSGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTI 229
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP-synt_A pfam00119
ATP synthase A chain;
22-226 1.78e-45

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 150.72  E-value: 1.78e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  22 MMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSE-GLRYFPLIVSLFFFIVFLNVLGLF---PYVFTP 97
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKkGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  98 TVHIVVTLGLSFSIIIGVTLAGFWR--FKGDFFSVFMPSgAPLGLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFA 175
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKKhgLGGYFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2265312630 176 ILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 68-226 1.28e-44

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 146.39  E-value: 1.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  68 GLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLI 147
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2265312630 148 ETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVAsgpVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 23-229 1.42e-42

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 143.29  E-value: 1.42e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  23 MMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIV 102
Cdd:COG0356     9 AMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADIN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 103 VTLGLSFSIIIGVTLAGFWR--FKGDFFSVFMPSGAPlgLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGF 180
Cdd:COG0356    89 VTLALALIVFVLVHYYGIKKkgLGGYLKHLFFPPFPW--LAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGL 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2265312630 181 GFNMLvasgpVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTI 229
Cdd:COG0356   167 APFLL-----LGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAV 210
 
Name Accession Description Interval E-value
ATP6 MTH00172
ATP synthase F0 subunit 6; Provisional
 1-232 1.08e-120

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214447  Cd Length: 232  Bit Score: 342.41  E-value: 1.08e-120
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIALTNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFF 80
Cdd:MTH00172    1 MSSSYFDQFNIVWLIGLTNSSIMMILVIIVVLLLFKGIKLIPKRWQSIIEIIYNHFHGVVKDNLGNEGLKYFPFIISLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  81 FIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLG 160
Cdd:MTH00172   81 FIVFLNLLGLFPYVFTPTTHIVVTLGLSFSIIIGVTLAGFWRFKWDFFSILMPSGAPLGLAPLLVLIETVSYISRAISLG 160

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2265312630 161 VRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:MTH00172  161 VRLAANLSAGHLLFAILAGFGFNMLCASGFLSLFPLLIMVFITLLEIAVAVIQAYVFCLLTTIYLADTIVLH 232
ATP6 MTH00175
ATP synthase F0 subunit 6; Provisional
 1-232 7.97e-99

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177228  Cd Length: 244  Bit Score: 287.67  E-value: 7.97e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIAL-----------TNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGL 69
Cdd:MTH00175    1 MLAAYFDQFNIIRLITIqaflgdwlvtfTNSSMMMVLAVIIFWLLLKGDKLIPNRWQSIMELIYLNIRSVVHDNLGKSGQ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  70 RYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIET 149
Cdd:MTH00175   81 KYFPFILSLFLFIAILNILGLFPYVFTPTAHIIITFGLSLSIIIAVTLLGFLTFKWNFLSILMPGGAPLVLAPFLVLIET 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 150 VSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPV-GVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADT 228
Cdd:MTH00175  161 LSYLIRAISLGVRLAANISAGHLLFAILSGFAFNMLSNGLIIlSLFPMLIMIFITLLEMAVAVIQAYVFCLLTTIYLGDT 240


                  ....
gi 2265312630 229 IVLH 232
Cdd:MTH00175  241 IALH 244
ATP_synt_6_or_A TIGR01131
ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be ...
 6-229 2.59e-55

ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes); Bacterial forms should be designated ATP synthase, F0 subunit A; eukaryotic (chloroplast and mitochondrial) forms should be designated ATP synthase, F0 subunit 6. The F1/F0 ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Individual subunits in each of these clusters are named differently in prokaryotes and in organelles e.g., mitochondria and chloroplast. The bacterial equivalent of subunit 6 is named subunit 'A'. It has been shown that proton is conducted though this subunit. Typically, deprotonation and reprotonation of the acidic amino acid side-chains are implicated in the process. [Energy metabolism, ATP-proton motive force interconversion]


Pssm-ID: 273458  Cd Length: 226  Bit Score: 176.24  E-value: 2.59e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   6 FDQFKI--VALIALTNSSMMMILVVVVVLLLFK-GVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFI 82
Cdd:TIGR01131   2 FSQFDIspITLFSLTLLSLILLLSLLIFLISSSlSRWLIPSRWQNLMESIYEFVLSIVKSQIGGKKGKFFPLIFTLFLFI 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  83 VFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLGVR 162
Cdd:TIGR01131  82 LISNLLGLIPYSFTPTSHLSFTLGLALPLWLGLTISGFRKHPKGFLAHLVPSGTPLPLIPFLVIIETISYLARPISLSVR 161

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2265312630 163 LAANLSAGHLLFAILAGFGFNMLvaSGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTI 229
Cdd:TIGR01131 162 LFANISAGHLLLTLLSGLLFSLM--SSAIFALLLLILVALIILEIFVAFIQAYVFTLLTCLYLNDAL 226
ATP6 MTH00174
ATP synthase F0 subunit 6; Provisional
 1-232 1.69e-53

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 133799  Cd Length: 252  Bit Score: 172.43  E-value: 1.69e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIAL----------------TNSSMMM---ILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVK 61
Cdd:MTH00174    1 MVAAYFDQFNIIPIFSIwvyflsfwingeffcfTNTFFMMsfaVFLFYTIGAKGNNNTLVPNRILVGLELIYSHFYTVLK 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  62 DNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLA 141
Cdd:MTH00174   81 DNLGNKGGNYLAFVLSLFILILFGNGLGLFPYVFTPTVHMVITLGLSFAIIVGTTLAGLITFRFNFFSILMPQGAPLALA 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 142 PLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVF-PLLIMVFITLLEVAVAVIQAYVFCLL 220
Cdd:MTH00174  161 PLLTIIETLSYISRAISLGVRLAANISSGHLLFSIIASFAWKMINTGILIGSFvPFAILIFVTILEMAVAIIQAYVFTLL 240

                         250
                  ....*....|..
gi 2265312630 221 ATIYLADTIVLH 232
Cdd:MTH00174  241 TIVYLRDTVELH 252
ATP-synt_A pfam00119
ATP synthase A chain;
22-226 1.78e-45

ATP synthase A chain;


Pssm-ID: 459679 [Multi-domain]  Cd Length: 216  Bit Score: 150.72  E-value: 1.78e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  22 MMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSE-GLRYFPLIVSLFFFIVFLNVLGLF---PYVFTP 97
Cdd:pfam00119   7 VALILLLFLLLATRKTKKLVPGRLQNFVEMLVEFVDNIVKDNIGKKkGRKFFPLLLTLFFFILVSNLLGLIpksPGGFTV 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  98 TVHIVVTLGLSFSIIIGVTLAGFWR--FKGDFFSVFMPSgAPLGLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFA 175
Cdd:pfam00119  87 TADINVTLALALIVFLLVHYYGIKKhgLGGYFKKLFVPP-VPLPLVPLLLPIEIISEFARPVSLSLRLFGNMLAGHLLLL 165

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2265312630 176 ILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:pfam00119 166 LLAGLIFALLSAGFLLGVIPPLLGVAWTLFELLVAFIQAYVFTMLTAVYIS 216
ATP-synt_Fo_a_6 cd00310
ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms ...
 68-226 1.28e-44

ATP synthase Fo complex, subunit 6 (eukaryotes) and subunit a (prokaryotes); Bacterial forms are designated as ATP synthase, Fo complex, subunit a; eukaryotic (chloroplast and mitochondrial) forms are designated as ATP synthase, Fo complex, subunit 6. The F-ATP synthases (also called FoF1-ATPases) consist of two structural domains: F1 (factor one) complex containing the soluble catalytic core, and Fo (oligomycin sensitive factor) complex containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. F-ATP synthases are primarily found in the inner membranes of eukaryotic mitochondria, in the thylakoid membranes of chloroplasts or in the plasma membranes of bacteria. F-ATP synthase has also been found in the archaea Methanosarcina acetivorans. F-ATP synthases are the primary producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). Alternatively, under conditions of low driving force, ATP synthases function as ATPases, thus generating a transmembrane proton or Na(+) gradient at the expense of energy derived from ATP hydrolysis.


Pssm-ID: 349411 [Multi-domain]  Cd Length: 156  Bit Score: 146.39  E-value: 1.28e-44
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  68 GLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLI 147
Cdd:cd00310     1 GKKYLPLLGTLFLFILFSNLLGLIPYSFTPTSHLNVTLALALIVFLGVHILGIKKHGLGFFLHFLPPGTPLPLAPLMVPI 80

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2265312630 148 ETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVAsgpVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:cd00310    81 ELISELIRPLSLSVRLFANMFAGHLLLALLSGLVPSLLSS---VGLLPLLLPVALTLLELFVAFIQAYVFTLLTAVYIS 156
AtpB COG0356
FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP ...
 23-229 1.42e-42

FoF1-type ATP synthase, membrane subunit a [Energy production and conversion]; FoF1-type ATP synthase, membrane subunit a is part of the Pathway/BioSystem: FoF1-type ATP synthase


Pssm-ID: 440125 [Multi-domain]  Cd Length: 212  Bit Score: 143.29  E-value: 1.42e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  23 MMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIV 102
Cdd:COG0356     9 AMLLLLLLFLLATRKLKLVPGGLQNFVEMLVEFVRNQVKDTIGKKGRKFAPLLLTLFLFILVSNLLGLIPGLFPPTADIN 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 103 VTLGLSFSIIIGVTLAGFWR--FKGDFFSVFMPSGAPlgLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGF 180
Cdd:COG0356    89 VTLALALIVFVLVHYYGIKKkgLGGYLKHLFFPPFPW--LAPLMLPIEIISELARPLSLSLRLFGNMFAGHIILLLLAGL 166

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*....
gi 2265312630 181 GFNMLvasgpVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTI 229
Cdd:COG0356   167 APFLL-----LGVLSLLLPVAWTAFELLVGFLQAYIFTMLTAVYISLAV 210
ATP6 MTH00157
ATP synthase F0 subunit 6; Provisional
 40-228 1.45e-41

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214441  Cd Length: 223  Bit Score: 141.07  E-value: 1.45e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  40 LIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAG 119
Cdd:MTH00157   37 LIPSRYNILWNKILKTLHKEFKTLLGPKNKGSTLIFISLFSFILFNNFLGLFPYIFTSTSHLSLTLSLALPLWLSFMLFG 116

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 120 FWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMlvasgPVGVFPLLIM 199
Cdd:MTH00157  117 WINNTNHMFAHLVPQGTPPILMPFMVLIETISNLIRPGTLAVRLAANMIAGHLLLTLLGNTGPSL-----SSMILSILIL 191

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2265312630 200 VFITL--LEVAVAVIQAYVFCLLATIYLADT 228
Cdd:MTH00157  192 IQILLliLESAVAIIQSYVFSVLSTLYSSEV 222
PRK05815 PRK05815
F0F1 ATP synthase subunit A; Validated
 22-232 2.86e-38

F0F1 ATP synthase subunit A; Validated


Pssm-ID: 235617  Cd Length: 227  Bit Score: 132.61  E-value: 2.86e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  22 MMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFP-YVFTPTVH 100
Cdd:PRK05815   23 LGVLILLLFALVATRKLSGVPGGLQNFVEMIVEFVRGQVKDNIGGKGKKFAPLAFTLFLFILLMNLLGLIPyLLFPPTAD 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 101 IVVTLGLSFSIIIGVTLAGFWRFK-GDFFSVFMPSgaplgLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAG 179
Cdd:PRK05815  103 INVTLALALIVFVLVIYYGIKKKGlGGYLKEFYLQ-----PHPLLLPIEIISEFSRPISLSLRLFGNMLAGELILALIAL 177

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2265312630 180 FGFNMLVasgpVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:PRK05815  178 LGGAGLL----LALAPLILPVAWTIFEIFVGTLQAYIFMMLTIVYISMAVEEE 226
ATP6 MTH00179
ATP synthase F0 subunit 6; Provisional
 1-226 5.98e-36

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177230  Cd Length: 227  Bit Score: 126.60  E-value: 5.98e-36
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIALTNSSMMMILVVVVVLLLFKGvqLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFF 80
Cdd:MTH00179    1 MMLSMFDQFESPSLLGIPLLALALLLPWLLFPSLTNR--WLNNRLSTLQSWFFGSFTFQLMQPINKKGHKWAVLFLSLML 78

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  81 FIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLG 160
Cdd:MTH00179   79 FLLTLNLLGLLPYTFTPTTQLSLNLGLALPLWLGTVLYGLFNQPTIALAHLLPEGTPTPLIPMLVWIETISLLIRPLALG 158

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2265312630 161 VRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:MTH00179  159 VRLTANITAGHLLMHLISSAVFVLMNFMGMVALLTLLVLFLLTLLEVAVAMIQAYVFVLLLSLYLQ 224
ATP6 MTH00132
ATP synthase F0 subunit 6; Provisional
 64-225 4.57e-35

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177190  Cd Length: 227  Bit Score: 124.22  E-value: 4.57e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  64 LGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPL 143
Cdd:MTH00132   62 LNVGGHKWALLLTSLMLFLITLNMLGLLPYTFTPTTQLSLNMGLAVPLWLATVIIGMRNQPTHALGHLLPEGTPTPLIPV 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 144 LVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATI 223
Cdd:MTH00132  142 LIIIETISLFIRPLALGVRLTANLTAGHLLIQLIATAAFVLLPLMPTVAILTATLLFLLTLLEVAVAMIQAYVFVLLLSL 221


                  ..
gi 2265312630 224 YL 225
Cdd:MTH00132  222 YL 223
ATP6 MTH00173
ATP synthase F0 subunit 6; Provisional
 74-228 1.95e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214448  Cd Length: 231  Bit Score: 120.36  E-value: 1.95e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  74 LIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFI 153
Cdd:MTH00173   74 LLSSLFLFLISLNLSGLLPFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGLVPAGAPAGLNPFLVLIETVSIL 153

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2265312630 154 SRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFP-LLIMVFITLLEVAVAVIQAYVFCLLATIYLADT 228
Cdd:MTH00173  154 IRPLTLTVRLLANISAGHIVLTLIGNYLSSSLFSSSVVSLLLvLLIQVGYFIFEVAVMLIQAYIFTLLIKLYSDEH 229
ATP6 MTH00176
ATP synthase F0 subunit 6; Provisional
 1-227 2.73e-33

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 214449  Cd Length: 229  Bit Score: 119.75  E-value: 2.73e-33
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKIVALIALTNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFF 80
Cdd:MTH00176    1 MLVDLFSSFDPPNKNIFSMISLSWITLLLFLLLMPSSVWFCPSKLQVFMLMFSTFLPEMILRSNGSYILGSASIIISLFI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  81 FIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLG 160
Cdd:MTH00176   81 LVMSLNLSGLIPYVFTSTSHLVITLSLALPLWLGVILSGFINNFYSRLSHLVPQGTPPLLNPFLVLIELVSLLIRPLTLA 160

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2265312630 161 VRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLAD 227
Cdd:MTH00176  161 VRLAANLSAGHLLLGLLGAAMWGLLPVSPLIGFLLLIVQILYFMFEIAVCMIQAYVFTLLLSLYLDE 227
ATP6 MTH00035
ATP synthase F0 subunit 6; Validated
 73-229 6.97e-32

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177110  Cd Length: 229  Bit Score: 116.23  E-value: 6.97e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  73 PLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSF 152
Cdd:MTH00035   74 GLLTTVFILILSINVLGLFPYAFTSTSHISLTYSLGIPLWMSVNILGFYLAFNSRLSHLVPQGTPSFLIPLMVWIETLSL 153

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2265312630 153 ISRAISLGVRLAANLSAGHLLFAILAGfGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTI 229
Cdd:MTH00035  154 FAQPIALGLRLAANLTAGHLLIFLLST-AIWELSNSPLISIITLIIFFLLFILEIGVACIQAYVFTALVHFYLEQNI 229
ATP6 MTH00073
ATP synthase F0 subunit 6; Provisional
 64-225 8.70e-32

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177144  Cd Length: 227  Bit Score: 115.83  E-value: 8.70e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  64 LGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPL 143
Cdd:MTH00073   62 LNTPGHKWALILTSLMVFLITMNLLGLLPYTFTPTTQLSLNLGLAVPLWLATVLIGLRNQPTASLGHLLPEGTPTLLIPI 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 144 LVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATI 223
Cdd:MTH00073  142 LIIIETISLFIRPLALGVRLTANLTAGHLLIQLISTATLVLLPLMPTVSILTMIVLFLLTLLEIAVAMIQAYVFVLLLSL 221


                  ..
gi 2265312630 224 YL 225
Cdd:MTH00073  222 YL 223
ATP6 MTH00120
ATP synthase F0 subunit 6; Provisional
 1-225 1.86e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177181  Cd Length: 227  Bit Score: 114.92  E-value: 1.86e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630   1 MSGAYFDQFKI--VALIALTNSSMMMILVVVVvlllFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSL 78
Cdd:MTH00120    1 MNLNFFDQFSSpeLLGIPLILLAMLIPALLIP----SPKNRLLTNRLTTLQLWLIKLITKQLMLPLNKKGHKWALILTSL 76

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  79 FFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAIS 158
Cdd:MTH00120   77 MLLLLLINLLGLLPYTFTPTTQLSMNMALAIPLWLATVLTGLRNQPTTSLAHLLPEGTPTPLIPALILIETISLLIRPLA 156

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2265312630 159 LGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYL 225
Cdd:MTH00120  157 LGVRLTANLTAGHLLIQLISTATLNLLPTMPTLSLLTLIILLLLTILELAVAMIQAYVFVLLLSLYL 223
ATP6 MTH00005
ATP synthase F0 subunit 6; Provisional
 20-227 3.04e-31

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 164583  Cd Length: 231  Bit Score: 114.44  E-value: 3.04e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  20 SSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTV 99
Cdd:MTH00005   22 STAFWAFNFSIILLLSSSFWITPNRLSSIMSPPKSTMHTQLSRTFGKHLKGFSSLISALFTMIILMNLSGLLPYVFSTSS 101

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 100 HIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAILAG 179
Cdd:MTH00005  102 HLIFTLTLGLPLWLSLIMSSVTFSPKKFAAHLLPGGAPDWLNPFLVLIETISILVRPITLSFRLAANMSAGHIVLSLIGI 181

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|....*...
gi 2265312630 180 FGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLAD 227
Cdd:MTH00005  182 YAASALFSSISSTILLILTQMGYILFEVGICLIQAYIFCLLLSLYSDD 229
ATP6 MTH00101
ATP synthase F0 subunit 6; Validated
 74-227 2.03e-30

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177163  Cd Length: 226  Bit Score: 112.35  E-value: 2.03e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  74 LIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFwRFKGDF-FSVFMPSGAPLGLAPLLVLIETVSF 152
Cdd:MTH00101   71 MLMSLILFIGSTNLLGLLPHSFTPTTQLSMNLGMAIPLWAGTVITGF-RNKTKAsLAHFLPQGTPTPLIPMLVIIETISL 149

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2265312630 153 ISRAISLGVRLAANLSAGHLLFAILAGFGFNMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLAD 227
Cdd:MTH00101  150 FIQPMALAVRLTANITAGHLLIHLIGGATLALMSISTTTALITFIILILLTILEFAVALIQAYVFTLLVSLYLHD 224
PRK13419 PRK13419
F0F1 ATP synthase subunit A; Provisional
 59-225 2.30e-16

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237381  Cd Length: 342  Bit Score: 76.71  E-value: 2.30e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  59 VVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPL 138
Cdd:PRK13419  158 VAKSNIGHGYEKFLPYLLTVFFFILVCNLLGLVPYGATATGNINVTLTLAVFTFFITQYAAIKAHGIKGYLAHLTGGTHW 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 139 GLAPLLVLIETVSFISRAISLGVRLAANLSAGHllFAILAGFGFNMLVASGPVGVFPLLIM-VFITLLEVAVAVIQAYVF 217
Cdd:PRK13419  238 SLWIIMIPIEFIGLFTKPFALTVRLFANMTAGH--IVILSLIFISFILKSYIVAVAVSVPFaIFIYLLELFVAFLQAYIF 315


                  ....*...
gi 2265312630 218 CLLATIYL 225
Cdd:PRK13419  316 TMLSALFI 323
PRK13417 PRK13417
F0F1 ATP synthase subunit A; Provisional
 59-232 4.34e-13

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237380  Cd Length: 352  Bit Score: 67.22  E-value: 4.34e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  59 VVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYV-----------------------------------FTPTVHIVV 103
Cdd:PRK13417  145 IVDESMHGHGHSYYHYIFTLFFFILFCNLMGLVPSVgeltvvasdygglvalgvmdhtphalptfakvwsgITVTGDISV 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 104 TLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPLLVLIE-TVSFISRAISLGVRLAANLSAGHLLfaILAGFGF 182
Cdd:PRK13417  225 TMTLALLTMFLIYGAGFSYQGPKFIWHSVPNGVPLLLYPIMWPLEfIVSPMAKTFALTVRLLANMTAGHVI--ILALMGF 302

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2265312630 183 NMLVASGPVGVFPLLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:PRK13417  303 IFQFQSWGIVPVSVIGSGLIYVLEIFVAFLQAYIFVLLTSLFVGLSMHRH 352
PRK13421 PRK13421
F0F1 ATP synthase subunit A; Provisional
 40-226 5.42e-11

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237383  Cd Length: 223  Bit Score: 60.09  E-value: 5.42e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  40 LIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSF-----SIIIG 114
Cdd:PRK13421   46 LAPGRLQSVLELVVTTIDAQIRDTMQTDPAPYRALIGTLFLFVLVANWSSLVPGVEPPTAHLETDAALALivflaTIYYG 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 115 VTLAGFWRFKGDFFSvfmPSgaplglaPLLVLIETVSFISRAISLGVRLAANLSAGHLLFAI---LAGfgfnmlvasgpv 191
Cdd:PRK13421  126 VRARGVRGYLATFAE---PT-------WVMIPLNLVEQLTRTFSLIVRLFGNVMSGVFVIGIvlsLAG------------ 183

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2265312630 192 gvfpLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:PRK13421  184 ----LLVPIPLMALDLLTGAVQAYIFAVLAMVFIG 214
ATP6 MTH00087
ATP synthase F0 subunit 6; Provisional
 76-225 1.21e-09

ATP synthase F0 subunit 6; Provisional


Pssm-ID: 177152  Cd Length: 195  Bit Score: 55.75  E-value: 1.21e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  76 VSLFFFIVFLNVLGLFPYVFTPTVHIVVTLGLSFSIIIGVTLagFWRFKGDFFSVFMPSGAPLGLAPL-LVLIETVSFIS 154
Cdd:MTH00087   56 FFTFIVLLLFCFGGLFPYSFSPCGMVEFTFLYALVAWLSTFL--SFLSKSEKFSVYLSKGSDSFLKTFsMLFVEIVSELS 133

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2265312630 155 RAISLGVRLAANLSAGHLLFAILAGFGFnmlvasgpvgvFPLLIMVFITLLEVAVAVIQAYVFCLLATIYL 225
Cdd:MTH00087  134 RPLALTLRLTVNLMVGHLISSLLNFLGE-----------KYVWLSILAIMMECFVAFIQSYIFSRLIYLYL 193
PRK13420 PRK13420
F0F1 ATP synthase subunit A; Provisional
 23-232 8.09e-09

F0F1 ATP synthase subunit A; Provisional


Pssm-ID: 237382 [Multi-domain]  Cd Length: 226  Bit Score: 53.98  E-value: 8.09e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  23 MMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLRYFPLIVSLFFFIVFLNVLGLFPYVFTPTVHIV 102
Cdd:PRK13420   26 IMIVLVLASWLTTRRLSLDPGRFQVALEGVVSTIEDAIKEVLPRHARLVLPFVGTLWIFILVANLIGLIPGFHSPTADLS 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630 103 VTLGLSFSIIIGVTLAGFWR--FKGDFFSVFMPSgaplglaPLLVLIETVSFISRAISLGVRLAANLSA---GHLLFAIL 177
Cdd:PRK13420  106 VTAALALLVFFSVHWFGIRAegLREYLKHYLSPS-------PFLLPFHLISEITRTLALAVRLFGNIMSlelAALLVLLV 178

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2265312630 178 AGFgfnmlvasgpvgvfplLIMVFITLLEVAVAVIQAYVFCLLATIYLADTIVLH 232
Cdd:PRK13420  179 AGF----------------LVPVPILMLHIIEALVQAYIFGMLALIYIAGGIQAH 217
ATP6 MTH00050
ATP synthase F0 subunit 6; Validated
 69-218 9.62e-07

ATP synthase F0 subunit 6; Validated


Pssm-ID: 177125  Cd Length: 170  Bit Score: 47.19  E-value: 9.62e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  69 LRYFPLIVSLFFFIVFLNVLGLF-----PYVFTPTVHIVVTLGLSFSIIIGVTLAGFWRFKGDFFSVFMPSGAPLGLAPL 143
Cdd:MTH00050   15 KLILGGSVSYYYSVVLFIVLFLFllyrlPYIYSPFLFVVFLFVVVFPLFISLFLSRVFDSLNEFFSSFVPVGTPLYICPF 94

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2265312630 144 LVLIETVSFISRAISLGVRLAANLSAGHLLFAILAGFGFnmlvasgpVGVFPLLIMVFITLLEVAVAVIQAYVFC 218
Cdd:MTH00050   95 VCIAETISYIIRPVVLILRPFINISLGCFGGVALGNLCF--------ISYWWFLVLFFLFFYEVFVALVHWFIVS 161
atpI CHL00046
ATP synthase CF0 A subunit
 17-226 2.11e-05

ATP synthase CF0 A subunit


Pssm-ID: 176987  Cd Length: 228  Bit Score: 44.15  E-value: 2.11e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  17 LTNSSMMMILVVVVVLLLFKGVQLIPKRWQSLIELIYEHFHGVVKDNLGSEGLR-YFPLIVSLFFFIVFLNVLG-LFPY- 93
Cdd:CHL00046   26 LITSWVVIAILLGSALLATRNLQTIPTGGQNFFEYVLEFIRDLAKTQIGEEEYRpWVPFIGTMFLFIFVSNWSGaLLPWk 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2265312630  94 --------VFTPTVHIVVTLGLSFSIIIGVTLAGFwRFKGdfFSVFMPSGAPlglAPLLVLIETVSFISRAISLGVRLAA 165
Cdd:CHL00046  106 lielphgeLAAPTNDINTTVALALLTSVAYFYAGL-SKKG--LGYFGKYIQP---TPILLPINILEDFTKPLSLSFRLFG 179

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2265312630 166 NLSAGHLLFAILAgfgfnMLVasgpvgvfPLLIMVFITLLEVAVAVIQAYVFCLLATIYLA 226
Cdd:CHL00046  180 NILADELVVAVLV-----SLV--------PLVVPIPVMFLGLFTSGIQALIFATLAAAYIG 227
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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