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Conserved domains on  [gi|2274147836|gb|UTS56667|]
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cytochrome b, partial (mitochondrion) [Plasmodium sp. 1]

Protein Classification

cytochrome b( domain architecture ID 999997)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Symbol:  CYTB
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl33360
cytochrome b; Provisional
 13-353 4.00e-100

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00156:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.00e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPLL----VVWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNSI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 248 MVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRNLTTIIQFKMLFgtreysvpmiWL 322
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKILF----------WI 317

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2274147836 323 MCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00156  318 FVNIVILLtWIGARPVEEPYILTGQILTILYF 349
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-353 4.00e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.00e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPLL----VVWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNSI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 248 MVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRNLTTIIQFKMLFgtreysvpmiWL 322
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKILF----------WI 317

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2274147836 323 MCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00156  318 FVNIVILLtWIGARPVEEPYILTGQILTILYF 349
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-283 3.81e-81

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 253.17  E-value: 3.81e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnIFILFLIQSLFGII 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2274147836 239 PLSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIP--SKTAGLLI 283
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 2.68e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 190.66  E-value: 2.68e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   8 LVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:cd00284    85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVigitLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 3.17e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.79  E-value: 3.17e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVigdtLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2274147836 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 13-353 4.00e-100

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 300.55  E-value: 4.00e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00156    8 LIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLH 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPLL----VVWLCGGYTVSDPTIKR 168
Cdd:MTH00156   88 IGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLgtdlVQWIWGGFSVDNATLTR 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNSI 247
Cdd:MTH00156  168 FFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIdKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFI 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 248 MVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAG-----LLIVLASLQLLFLLAEQRNLTTIIQFKMLFgtreysvpmiWL 322
Cdd:MTH00156  248 PANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGvialvMSILILMILPFTNKSKFRGNQFYPINKILF----------WI 317

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2274147836 323 MCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00156  318 FVNIVILLtWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00191
cytochrome b; Provisional
 6-361 9.39e-96

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 289.89  E-value: 9.39e-96
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00191    8 LKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFF 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNY-SYLYLpLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYT 160
Cdd:MTH00191   88 FICIYLHIGRGLYYgSYLNK-ETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYigddLVQWLWGGFS 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIP 239
Cdd:MTH00191  167 VDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSdSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 240 LSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFgtre 314
Cdd:MTH00191  247 LGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLalvmsILVLFLLPLLHTSKQRSNTFRPLTQVVF---- 322

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 2274147836 315 ysvpmiWLM-CSFYALLWIGCQLPQEIFILYGRLFIISFFCSGLFSLV 361
Cdd:MTH00191  323 ------WLWvANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00145
cytochrome b; Provisional
 6-353 1.09e-95

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 290.27  E-value: 1.09e-95
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00145   12 LKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----LLVVWLCGGYT 160
Cdd:MTH00145   92 FICIYLHIGRGLYYgSYLMQH-TWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPyvgkMLVEWVWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIP 239
Cdd:MTH00145  171 VGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGdKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 240 LSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFgtre 314
Cdd:MTH00145  251 LGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIalvmsIVILFFLPLLHVGKFRSLSFYPLNQVLF---- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2274147836 315 ysvpmiWLMCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00145  327 ------WIFVGNFFILtWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00119
cytochrome b; Provisional
 8-353 2.04e-90

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 276.78  E-value: 2.04e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   8 LVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:MTH00119   14 IINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFI 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  88 LTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVS 162
Cdd:MTH00119   94 CIYLHIGRGLYYgSYLYKE-TWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYigqtLVEWIWGGFSVD 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLS 241
Cdd:MTH00119  173 NPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTdKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLG 252

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 242 HPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTtiiqfkmlfgTREYS 316
Cdd:MTH00119  253 DPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLalaasILILFLMPFLHTSKQRSMT----------FRPLS 322

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2274147836 317 VPMIWLMCS-FYALLWIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00119  323 QLLFWTLVAnLLILTWIGSQPVEHPFIIIGQLASILYF 360
CYTB MTH00016
cytochrome b; Validated
 2-353 2.51e-87

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 268.85  E-value: 2.51e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   2 NFNSINLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATG 81
Cdd:MTH00016    8 THPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANG 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  82 ASLVFFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----LLVVWLCG 157
Cdd:MTH00016   88 ASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPyigkMLVQWLWG 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 158 GYTVSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFG 236
Cdd:MTH00016  168 GFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSdKVPFHPYYTSKDIVGFIVMLFLLLSVVLLW 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 237 IIPLSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFg 311
Cdd:MTH00016  248 PNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVamfasILILFFLPFIFKQKFRGLSFYPLNQILF- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2274147836 312 treysvpmiWLMCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00016  327 ---------WLLVSNFLLLtWIGGRPVEPPYEFLGQIFTVFYF 360
CYTB MTH00131
cytochrome b; Provisional
 13-353 9.00e-87

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 267.29  E-value: 9.00e-87
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00131   18 LVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----LLVVWLCGGYTVSDPTIK 167
Cdd:MTH00131   98 IGRGLYYgSYLYKE-TWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPyvgnTLVQWIWGGFSVDNATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNS 246
Cdd:MTH00131  177 RFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSdADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNF 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 247 IMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFGTreysvpmiw 321
Cdd:MTH00131  257 TPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLallfsILVLMVVPILHTSKQRGLTFRPLTQFLFWT--------- 327

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2274147836 322 LMCSFYALLWIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00131  328 LVADVLILTWIGGMPVEHPFIIIGQVASVLYF 359
CYTB MTH00100
cytochrome b; Provisional
 13-353 4.37e-86

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 265.73  E-value: 4.37e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00100   18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDPTIK 167
Cdd:MTH00100   98 VGRGLYYgSYLFLE-TWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYigttLVEWIWGGFSVDKATLT 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 168 RFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNS 246
Cdd:MTH00100  177 RFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSdSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNY 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 247 IMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLLAEqrnLTTIIQFKMLFgtREYSVPMIWLMCS- 325
Cdd:MTH00100  257 TPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPL---LHTSKQRSMMF--RPLSQCLFWLLVAd 331

                         330       340
                  ....*....|....*....|....*...
gi 2274147836 326 FYALLWIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00100  332 LLTLTWIGGQPVEHPFIIIGQLASILYF 359
CYTB MTH00074
cytochrome b; Provisional
 6-354 8.96e-84

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 259.61  E-value: 8.96e-84
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00074   12 LKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNY-SYLYLPlSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----LLVVWLCGGYT 160
Cdd:MTH00074   92 FICIYLHIGRGLYYgSYMYKE-TWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPymgdTLVQWIWGGFS 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIP 239
Cdd:MTH00074  171 VDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPdKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 240 LSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFgtre 314
Cdd:MTH00074  251 LGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLallasILILMLIPMLHTSKQRSLMFRPLTQILF---- 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2274147836 315 ysvpmiWLMCSFYALL-WIGCQLPQEIFILYGRLFIISFFC 354
Cdd:MTH00074  327 ------WLLVANTLILtWIGGQPVEDPFIEIGQAASILYFL 361
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
12-283 3.81e-81

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 253.17  E-value: 3.81e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  12 HLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYL 91
Cdd:COG1290    26 EHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYL 105

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  92 HILRGLNY-SYLYlP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDP 164
Cdd:COG1290   106 HMFRGFFYgAYKK-PreLNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVigtwLVTWLFGGEFPGDA 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 165 TIKRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPLGYDTALK-----IPFYPNLLSLDVKGFnnIFILFLIQSLFGII 238
Cdd:COG1290   185 TLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTekvdgVPFHPYYTVKDGFGF--FVFLGVFALLAFFF 262

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....*..
gi 2274147836 239 PLSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIP--SKTAGLLI 283
Cdd:COG1290   263 PINPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIA 309
CYTB MTH00034
cytochrome b; Validated
 6-358 1.53e-79

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 248.85  E-value: 1.53e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00034   11 FKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLF 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:MTH00034   91 FICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYigtdIVQWIWGGFSV 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPL 240
Cdd:MTH00034  171 DNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYdKVPFHTYFTTKDLVGFLILFAALSSLALLFPTAL 250

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 241 SHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTtiiqfkmlfgTREY 315
Cdd:MTH00034  251 NDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIalvaaILVLFLVPILHTSNNQSST----------FRPL 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2274147836 316 SVPMIWLMCS-FYALLWIGCQLPQEIFILYGRLFIISFFCSGLF 358
Cdd:MTH00034  321 SQIAFWLLIAtFFILTWIGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00224
cytochrome b; Provisional
 6-353 2.39e-79

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 248.30  E-value: 2.39e-79
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00224   12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYigkdLVEWIWGGFAV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDT-ALKIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPL 240
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAdSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 241 SHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFgtrey 315
Cdd:MTH00224  252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVValfaaILILFILPLTSVMNKRSLPFYPLNQLLF----- 326

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2274147836 316 svpmiWLMCSFYALL-WIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00224  327 -----WLLVTSWAILtWIGGRPVEDPFEGIGQVFTILYF 360
CYTB MTH00022
cytochrome b; Validated
 6-354 3.04e-78

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 245.38  E-value: 3.04e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00022   10 LSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLF 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNY-SYLYLPLsWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYT 160
Cdd:MTH00022   90 FLCLYIHIGRGLYYgGYLKFHV-WNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYvgtdIVQWVWGGFS 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 161 VSDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIP 239
Cdd:MTH00022  169 VSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVdKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNL 248

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 240 LSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFGtre 314
Cdd:MTH00022  249 LGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVamffsILILFFLPLLHTSWLRGLTFRPLGRMAFW--- 325

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2274147836 315 ysvpmiWLMCSFYALLWIGCQLPQEIFILYGRLFIISFFC 354
Cdd:MTH00022  326 ------FLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFF 359
CYTB MTH00053
cytochrome b; Provisional
 6-353 2.02e-75

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 238.45  E-value: 2.02e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00053   12 ISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:MTH00053   92 FLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYvgddIVRWVWGGFSV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGYDTAL-KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPL 240
Cdd:MTH00053  172 SNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIdKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSL 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 241 SHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFGtrey 315
Cdd:MTH00053  252 GDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVValvfsILVLFFLPYLHKSRFRGLSFRPLSKILFW---- 327

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2274147836 316 svpmiWLMCSFYALLWIGCQLPQEIFILYGRLFIISFF 353
Cdd:MTH00053  328 -----FLVGDFFLLTWIGGQPVEEPYILIGQIASIFYF 360
CYTB MTH00086
cytochrome b; Provisional
 7-363 1.78e-73

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 232.52  E-value: 1.78e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   7 NLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVF 86
Cdd:MTH00086    1 NFVNSLVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  87 FLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVS 162
Cdd:MTH00086   81 IFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIwgpsIVMWIWGGFGVS 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 163 DPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDvkGFNNIFILFLIQ-SLFGIIPL 240
Cdd:MTH00086  161 SATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYcHGDYDKICFGPEYWNKD--AYNIIFWLVFIIfSLFYPFNL 238

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 241 SHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLLAEQRNLTTIIQFKMLFGTREYSVPMI 320
Cdd:MTH00086  239 GDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLNKLNKFLVFSFIVVNV 318

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2274147836 321 WLMcsfyallWIGCQLPQEIFILYGRLF-IISFFCSGLFSLVYY 363
Cdd:MTH00086  319 ILS-------WLGQCLVEYPFLFLSQIFsFIYFFLILLMLFLFY 355
CYTB MTH00033
cytochrome b; Provisional
 13-353 6.44e-65

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 211.33  E-value: 6.44e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIP----LLVVWLCGGYTVSDPTIKR 168
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPsvggSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 169 FFVLHFILPFVALCIVFIHIFFLHLHGSTNPLGY-DTALKIPFYPNLLSLDVKGFnniFILFLIQSLFGIIP-----LSH 242
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLvGLSDRTAFHVYFTIKDILGF---LILFGVFVIIGIEPrietlLQD 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 243 PDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLL-----IVLASLQLLFLLAEQRNLTTIIQFKMLFGtreysv 317
Cdd:MTH00033  252 PENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLalfasILVLLLMPILDRSKIRSLTFNPTGKFFFW------ 325

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2274147836 318 pmiWLMCSFYALLWIG-CQLPQEIFILYGRLFIISFF 353
Cdd:MTH00033  326 ---FIVGDFIILTWIGsAPAGADPYVLIGRIATIFYF 359
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 8-197 2.68e-59

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 190.66  E-value: 2.68e-59
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   8 LVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFF 87
Cdd:cd00284     5 EVNNSLIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFL 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  88 LTYLHILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:cd00284    85 MLYLHIFRGLYYGSYKKPreLTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVigitLVEWLWGGFSV 164

                         170       180       190
                  ....*....|....*....|....*....|....*.
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGST 197
Cdd:cd00284   165 DNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
13-195 3.17e-50

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 166.79  E-value: 3.17e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  13 LLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLH 92
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  93 ILRGLNYSYLYLP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDPTI 166
Cdd:pfam00033  81 IFRGLYYGGFSYPreLTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVigdtLVEWIWGSFSVDQATL 160

                         170       180
                  ....*....|....*....|....*....
gi 2274147836 167 KRFFVLHFILPFVALCIVFIHIFFLHLHG 195
Cdd:pfam00033 161 TRFFSLHFLLPFILAILMLLHLLFLHETG 189
CYTB MTH00046
cytochrome b; Validated
 6-284 1.04e-49

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 170.55  E-value: 1.04e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836   6 INLVKAHLLNYPCPLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLV 85
Cdd:MTH00046    2 ISLIRRNLIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  86 FFLTYLHILRGLNYSYLYLPLSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTV 161
Cdd:MTH00046   82 FILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIvgslVYKYIVGGFSV 161

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 162 SDPTIKRFFVLHFILPFVALCIVFIHIFFLHLHGSTNPLgydtalkipFYPNLLSlDVKGFN------NIFILFLIQSLF 235
Cdd:MTH00046  162 TGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPL---------FSSNGYS-DVVYFHsyftvkDLFLFMVVCSLL 231

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2274147836 236 GIIPLSHPDNSIMVNTY------VTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIV 284
Cdd:MTH00046  232 VFWLFVSPDLVLDIEAYleadplVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLV 286
PRK03735 PRK03735
cytochrome b6; Provisional
 24-200 6.51e-27

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 106.33  E-value: 6.51e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  24 FLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRGLNYSYLY 103
Cdd:PRK03735   40 FVYCFGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYK 119

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 104 LP--LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDPTIKRFFVLH-FIL 176
Cdd:PRK03735  120 KPreLNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVigdfIKTLLRGGEIVGAQTLTRFFAIHvFFL 199

                         170       180
                  ....*....|....*....|....
gi 2274147836 177 PFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:PRK03735  200 PWALAVLMLAHFLMIRKQGISGPL 223
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
83-243 3.34e-23

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 95.00  E-value: 3.34e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  83 SLVFFLTYLHILRGLNY-SYLYLP-LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLC 156
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTgAYRKPReLNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVvgtwLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 157 GGYTVSDPTIKRFFVLHF-ILPFVALCIVFIHIFFLHLHGSTNPLG-YDTALKIPFYPNLLSLDVKGFNNIFILFLIQSL 234
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGtEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2274147836 235 FGIIPLSHP 243
Cdd:pfam13631 161 INPIWLGGP 169
petB CHL00070
cytochrome b6
 19-200 4.15e-21

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 90.55  E-value: 4.15e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  19 PLNINFLWNYGFLLGIIFFIQILTGVFLASRYTPEISYAYYSIQHILRELWSGWCFRYMHATGASLVFFLTYLHILRgln 98
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFR--- 103

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836  99 ysyLYLP--------LSWISGLIIFALFIVTAFIGYVLPWGQMSYWGATVITNLLSSIPL----LVVWLCGGYTVSDPTI 166
Cdd:CHL00070  104 ---VYLTggfkkpreLTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVigspLVELLRGSVSVGQSTL 180

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2274147836 167 KRFFVLH-FILPFVALCIVFIHIFFLHLHGSTNPL 200
Cdd:CHL00070  181 TRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
248-352 1.01e-15

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 72.13  E-value: 1.01e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 248 MVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLASLQLLFLLAE-QRNLTTIIQFKMLFgtreySVPMIWLMCSF 326
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWlDRSPVRSIRYRPLF-----KIFFWLFVVDF 75

                          90       100
                  ....*....|....*....|....*.
gi 2274147836 327 YALLWIGCQLPQEIFILYGRLFIISF 352
Cdd:pfam00032  76 VVLGWLGKQPPTGPYTLLGQIATVYY 101
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 207-348 2.30e-14

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 69.60  E-value: 2.30e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2274147836 207 KIPFYPNLLSLDVKGFNNIFILFLIQSLFGIIPLSHPDNSIMVNTYVTPIQIVPEWYFLPFYAMLKTIPSKTAGLLIVLA 286
Cdd:cd00290    11 KISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNKLLGVLAMAA 90

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2274147836 287 SLQLLFLLAEQRNLTTIIQFKMLfgtreYSVPMIWLMCSFYALLWIGCQLPQEIFILYGRLF 348
Cdd:cd00290    91 SILSLFLVPFLENSNKRSQFRPL-----RPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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