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Conserved domains on  [gi|2277710331|gb|UUA66495|]
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photosystem I assembly protein Ycf3 (chloroplast) [Parnassia nubicola]

Protein Classification

photosystem I assembly protein Ycf3( domain architecture ID 11414006)

photosystem I assembly protein Ycf3 is essential for the assembly of the photosystem I (PSI) complex; may act as a chaperone-like factor to guide the assembly of the PSI subunits

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.51e-132

photosystem I assembly protein Ycf3


:

Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.03  E-value: 1.51e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033    1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                  ....*...
gi 2277710331 161 LKITRRFE 168
Cdd:CHL00033  161 LKITGRFE 168
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.51e-132

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.03  E-value: 1.51e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033    1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                  ....*...
gi 2277710331 161 LKITRRFE 168
Cdd:CHL00033  161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 1.66e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.92  E-value: 1.66e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713     1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:COG5713    81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                  ....*...
gi 2277710331 161 LKITRRFE 168
Cdd:COG5713   161 LKTTGRSK 168
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.78e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.78e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2277710331  72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 2.98e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 2.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  19 ANILLQIIPttsgeKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILyniGLIHTSNGEHTKALEYYFRA 98
Cdd:TIGR02917 250 ADALLKKAP-----NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2277710331  99 LERNPFLPQAFNNMAVICHYRGE--QAIRQ------------------GDSEIAEAWFDQAAEYWKQAIALTPGN 153
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRvdEAIATlspalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDPEN 396
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.55e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.55e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2277710331   74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
M28_like cd05640
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
 96-154 2.24e-03

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349893 [Multi-domain]  Cd Length: 281  Bit Score: 37.43  E-value: 2.24e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2277710331  96 FRALERNPFLPQAFnnMAVICHYRGEQAIRQGDsEIAEAWFDQAAEYWKQAIALTPGNY 154
Cdd:cd05640     8 LVRMERNPHDPSAF--LAAAAEYIAQELVGSGY-NVTSHFFSHQEGVYANLIADLPGSY 63
 
Name Accession Description Interval E-value
ycf3 CHL00033
photosystem I assembly protein Ycf3
 1-168 1.51e-132

photosystem I assembly protein Ycf3


Pssm-ID: 176974 [Multi-domain]  Cd Length: 168  Bit Score: 367.03  E-value: 1.51e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:CHL00033    1 MPRSQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:CHL00033   81 IHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNW 160


                  ....*...
gi 2277710331 161 LKITRRFE 168
Cdd:CHL00033  161 LKITGRFE 168
Ycf3 COG5713
Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; ...
 1-168 1.66e-99

Photosystem I assembly protein Ycf3, contains TPR repeats [Energy production and conversion]; Photosystem I assembly protein Ycf3, contains TPR repeats is part of the Pathway/BioSystem: Photosystem I


Pssm-ID: 444423  Cd Length: 173  Bit Score: 283.92  E-value: 1.66e-99
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:COG5713     1 MPRTQRNDNFIDKSFTVMADLILKMLPTNKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPYDRSYILYNMGL 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:COG5713    81 IHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYQGEKAKEAGDQDEAEALFDKAAEYWKRAIRLAPNNYIEAQNW 160


                  ....*...
gi 2277710331 161 LKITRRFE 168
Cdd:COG5713   161 LKTTGRSK 168
PRK02603 PRK02603
photosystem I assembly protein Ycf3; Provisional
 1-166 1.33e-98

photosystem I assembly protein Ycf3; Provisional


Pssm-ID: 179448 [Multi-domain]  Cd Length: 172  Bit Score: 281.56  E-value: 1.33e-98
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331   1 MPRSRINGNFIDKTFSIVANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGL 80
Cdd:PRK02603    1 MPRTQRNDNFIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGI 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNW 160
Cdd:PRK02603   81 IYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNW 160


                  ....*.
gi 2277710331 161 LKITRR 166
Cdd:PRK02603  161 LKTTGR 166
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 34-161 1.57e-12

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 64.24  E-value: 1.57e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  34 EAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMA 113
Cdd:COG3914   111 NAEALFNLGNLLLALGRLEEALAALRRA--LALNP-DFAEAYLNLGEALRRLGRLEEAIAALRRALELDPDNAEALNNLG 187

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....*...
gi 2277710331 114 VICHYRGEqairqgdseiaeawFDQAAEYWKQAIALTPGNYIEAQNWL 161
Cdd:COG3914   188 NALQDLGR--------------LEEAIAAYRRALELDPDNADAHSNLL 221
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
33-153 3.85e-12

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 62.33  E-value: 3.85e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNM 112
Cdd:COG0457     6 DDAEAYNNLGLAYRRLGRYEEAIEDYEKA--LELDP-DDAEALYNLGLAYLRLGRYEEALADYEQALELDPDDAEALNNL 82

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2277710331 113 AVICHYRG--EQAIR------QGDSEIAEAW------------FDQAAEYWKQAIALTPGN 153
Cdd:COG0457    83 GLALQALGryEEALEdydkalELDPDDAEALynlglallelgrYDEAIEAYERALELDPDD 143
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
21-142 3.92e-11

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 59.16  E-value: 3.92e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  21 ILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALE 100
Cdd:COG4785    59 AAERIDRALALPDLAQLYYERGVAYDSLGDYDLAIADFDQA--LELDP-DLAEAYNNRGLAYLLLGDYDAALEDFDRALE 135

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2277710331 101 RNPFLPQAFNNMAVICHYRgeqairqGDSEIAEAWFDQAAEY 142
Cdd:COG4785   136 LDPDYAYAYLNRGIALYYL-------GRYELAIADLEKALEL 170
Spy COG3914
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational ...
 19-161 1.80e-10

Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443119 [Multi-domain]  Cd Length: 658  Bit Score: 58.47  E-value: 1.80e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  19 ANILLQIIPTTSGEKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNI----GLIHTSNGEHTKALEY 94
Cdd:COG3914    21 AAAAELALAAELEAAALAAALGLALLLLAALAEAAAAALLALAAGEAAAAAAALLLLAALlelaALLLQALGRYEEALAL 100

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  95 YFRALERNPFLPQAFNNMAVICHYRG---------EQAIRQgDSEIAEAW------------FDQAAEYWKQAIALTPgN 153
Cdd:COG3914   101 YRRALALNPDNAEALFNLGNLLLALGrleealaalRRALAL-NPDFAEAYlnlgealrrlgrLEEAIAALRRALELDP-D 178


                  ....*...
gi 2277710331 154 YIEAQNWL 161
Cdd:COG3914   179 NAEALNNL 186
TPR COG0457
Tetratricopeptide (TPR) repeat [General function prediction only];
35-166 2.49e-09

Tetratricopeptide (TPR) repeat [General function prediction only];


Pssm-ID: 440225 [Multi-domain]  Cd Length: 245  Bit Score: 54.24  E-value: 2.49e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG0457    76 AEALNNLGLALQALGRYEEALEDYDKA--LELDPDD-AEALYNLGLALLELGRYDEAIEAYERALELDPDDADALYNLGI 152

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2277710331 115 ICHYRG--EQAIRQGDSEIAEAWFDQAAEYWKQAIALTPGNYIEAQNWLKITRR 166
Cdd:COG0457   153 ALEKLGryEEALELLEKLEAAALAALLAAALGEAALALAAAEVLLALLLALEQA 206
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 32-141 3.17e-09

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 53.04  E-value: 3.17e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG5010    51 AKAFAIESPSDNLYNKLGDFEESLALLEQA--LQLDPNN-PELYYNLALLYSRSGDKDEAKEYYEKALALSPDNPNAYSN 127

                          90       100       110
                  ....*....|....*....|....*....|
gi 2277710331 112 MAVIchyrgeqAIRQGDSEIAEAWFDQAAE 141
Cdd:COG5010   128 LAAL-------LLSLGQDDEAKAALQRALG 150
NrfG COG4235
Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, ...
 42-153 3.39e-09

Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443378 [Multi-domain]  Cd Length: 131  Bit Score: 52.32  E-value: 3.39e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIchyrge 121
Cdd:COG4235    24 GRAYLRLGRYDEALAAYEKA--LRLDP-DNADALLDLAEALLAAGDTEEAEELLERALALDPDNPEALYLLGLA------ 94

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2277710331 122 qAIRQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG4235    95 -AFQQGD-------YAEAIAAWQKLLALLPAD 118
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
45-154 7.50e-09

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 50.55  E-value: 7.50e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  45 AQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYyFRALERNPFLPQAFNNMAVICHYRGEqai 124
Cdd:COG3063     2 YLKLGDLEEAEEYYEKA--LELDP-DNADALNNLGLLLLEQGRYDEAIAL-EKALKLDPNNAEALLNLAELLLELGD--- 74

                          90       100       110
                  ....*....|....*....|....*....|
gi 2277710331 125 rqgdseiaeawFDQAAEYWKQAIALTPGNY 154
Cdd:COG3063    75 -----------YDEALAYLERALELDPSAL 93
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
33-161 1.42e-08

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 52.22  E-value: 1.42e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  33 KEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPY----DRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG4785    30 LFAAVLALAIALADLALALAAAALAAAALAAERIDRAlalpDLAQLYYERGVAYDSLGDYDLAIADFDQALELDPDLAEA 109

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2277710331 109 FNNMAVIchyrgeqAIRQGDSEIAEAWFDQAAE--------YWKQAIALTP-GNYIEAQNWL 161
Cdd:COG4785   110 YNNRGLA-------YLLLGDYDAALEDFDRALEldpdyayaYLNRGIALYYlGRYELAIADL 164
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 35-153 5.88e-08

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 49.03  E-value: 5.88e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4783     4 AEALYALAQALLLAGDYDEAEALLEKA--LELDPDN-PEAFALLGEILLQLGDLDEAIVLLHEALELDPDEPEARLNLGL 80

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 2277710331 115 IchyrgeqAIRQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG4783    81 A-------LLKAGD-------YDEALALLEKALKLDPEH 105
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 32-153 1.13e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 49.73  E-value: 1.13e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  32 EKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPYDRSyILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNN 111
Cdd:COG2956    73 PDRAEALLELAQDYLKAGLLDRAEELLEKL--LELDPDDAE-ALRLLAEIYEQEGDWEKAIEVLERLLKLGPENAHAYCE 149

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|..
gi 2277710331 112 MAvichyrgEQAIRQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG2956   150 LA-------ELYLEQGD-------YDEAIEALEKALKLDPDC 177
BepA COG4783
Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell ...
 42-153 3.38e-07

Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones];


Pssm-ID: 443813 [Multi-domain]  Cd Length: 139  Bit Score: 47.11  E-value: 3.38e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  42 GMSAQSEGNYAEALQNYYEAMRLeiDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGE 121
Cdd:COG4783    45 GEILLQLGDLDEAIVLLHEALEL--DP-DEPEARLNLGLALLKAGDYDEALALLEKALKLDPEHPEAYLRLARAYRALGR 121

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2277710331 122 qairqgdseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:COG4783   122 --------------PDEAIAALEKALELDPDD 139
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 31-141 9.41e-07

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 47.03  E-value: 9.41e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFN 110
Cdd:COG2956   140 GPENAHAYCELAELYLEQGDYDEAIEALEKA--LKLDP-DCARALLLLAELYLEQGDYEEAIAALERALEQDPDYLPALP 216

                          90       100       110
                  ....*....|....*....|....*....|.
gi 2277710331 111 NMAVIchyrgeqAIRQGDSEIAEAWFDQAAE 141
Cdd:COG2956   217 RLAEL-------YEKLGDPEEALELLRKALE 240
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 35-162 1.86e-06

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 46.26  E-value: 1.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG2956     8 ALGWYFKGLNYLLNGQPDKAIDLLEEA--LELDP-ETVEAHLALGNLYRRRGEYDRAIRIHQKLLERDPDRAEALLELAQ 84

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2277710331 115 IchyrgeqAIRQGDseiaeawFDQAAEYWKQAIALTPGN----------YIEAQNWLK 162
Cdd:COG2956    85 D-------YLKAGL-------LDRAEELLEKLLELDPDDaealrllaeiYEQEGDWEK 128
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
81-162 1.60e-05

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 41.69  E-value: 1.60e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  81 IHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRG--EQAIR-----QGDSEIAEAWFDQAAEYWKQaialtpGN 153
Cdd:COG3063     1 LYLKLGDLEEAEEYYEKALELDPDNADALNNLGLLLLEQGryDEAIAlekalKLDPNNAEALLNLAELLLEL------GD 74


                  ....*....
gi 2277710331 154 YIEAQNWLK 162
Cdd:COG3063    75 YDEALAYLE 83
TPR_1 pfam00515
Tetratricopeptide repeat;
72-103 1.78e-05

Tetratricopeptide repeat;


Pssm-ID: 459840 [Multi-domain]  Cd Length: 34  Bit Score: 39.71  E-value: 1.78e-05
                          10        20        30
                  ....*....|....*....|....*....|..
gi 2277710331  72 SYILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:pfam00515   1 AKALYNLGNAYFKLGKYDEALEYYEKALELNP 32
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 38-151 1.89e-05

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 43.56  E-value: 1.89e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  38 YYRDGMSAQSEGNYAEALQnYYEAMrLEIDPYDrSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVIch 117
Cdd:COG2956   113 LRLLAEIYEQEGDWEKAIE-VLERL-LKLGPEN-AHAYCELAELYLEQGDYDEAIEALEKALKLDPDCARALLLLAEL-- 187

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2277710331 118 yrgeqAIRQGDseiaeawFDQAAEYWKQAIALTP 151
Cdd:COG2956   188 -----YLEQGD-------YEEAIAALERALEQDP 209
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 19-153 2.98e-05

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 43.15  E-value: 2.98e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  19 ANILLQIIPttsgeKEAFTYYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILyniGLIHTSNGEHTKALEYYFRA 98
Cdd:TIGR02917 250 ADALLKKAP-----NSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLA---GASEYQLGNLEQAYQYLNQI 321

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2277710331  99 LERNPFLPQAFNNMAVICHYRGE--QAIRQ------------------GDSEIAEAWFDQAAEYWKQAIALTPGN 153
Cdd:TIGR02917 322 LKYAPNSHQARRLLASIQLRLGRvdEAIATlspalgldpddpaalsllGEAYLALGDFEKAAEYLAKATELDPEN 396
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 38-108 7.05e-05

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 40.36  E-value: 7.05e-05
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2277710331  38 YYRDGMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQA 108
Cdd:COG1729    33 LYWLGEAYYALGDYDEAAEAFEKLLKRYPDSPKAPDALLKLGLSYLELGDYDKARATLEELIKKYPDSEAA 103
TadD COG5010
Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, ...
 51-159 7.33e-05

Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures];


Pssm-ID: 444034 [Multi-domain]  Cd Length: 155  Bit Score: 41.10  E-value: 7.33e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  51 YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYRGEqairqgdse 130
Cdd:COG5010    33 GANNTKEDELAAAGRDKLAKAFAIESPSDNLYNKLGDFEESLALLEQALQLDPNNPELYYNLALLYSRSGD--------- 103

                          90       100
                  ....*....|....*....|....*....
gi 2277710331 131 iaeawFDQAAEYWKQAIALTPGNYIEAQN 159
Cdd:COG5010   104 -----KDEAKEYYEKALALSPDNPNAYSN 127
TPR smart00028
Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum ...
 74-103 1.55e-04

Tetratricopeptide repeats; Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.


Pssm-ID: 197478 [Multi-domain]  Cd Length: 34  Bit Score: 37.43  E-value: 1.55e-04
                           10        20        30
                   ....*....|....*....|....*....|
gi 2277710331   74 ILYNIGLIHTSNGEHTKALEYYFRALERNP 103
Cdd:smart00028   3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32
TPR_16 pfam13432
Tetratricopeptide repeat; This family is found predominantly at the C-terminus of ...
 42-106 1.55e-04

Tetratricopeptide repeat; This family is found predominantly at the C-terminus of transglutaminase enzyme core regions.


Pssm-ID: 433202 [Multi-domain]  Cd Length: 68  Bit Score: 38.09  E-value: 1.55e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2277710331  42 GMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLP 106
Cdd:pfam13432   4 ARAALRAGDYDDAAAALEAALARFPESPDAAAALLLLGLAALRQGRLAEAAAAYRAALRAAPGDP 68
3a0801s09 TIGR00990
mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) ...
 31-153 1.67e-04

mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70); [Transport and binding proteins, Amino acids, peptides and amines]


Pssm-ID: 273380 [Multi-domain]  Cd Length: 615  Bit Score: 41.12  E-value: 1.67e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  31 GEKEAFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDP-YDRSYIlyNIGLIHTSNGEHTKALEYYFRALERNPflpqaf 109
Cdd:TIGR00990 327 GEKEAIALNLRGTFKCLKGKHLEALADLSKS--IELDPrVTQSYI--KRASMNLELGDPDKAEEDFDKALKLNS------ 396

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|....
gi 2277710331 110 NNMAVICHyRGEQAIRQGDseiaeawFDQAAEYWKQAIALTPGN 153
Cdd:TIGR00990 397 EDPDIYYH-RAQLHFIKGE-------FAQAGKDYQKSIDLDPDF 432
TPR_12 pfam13424
Tetratricopeptide repeat;
35-101 2.95e-04

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 37.75  E-value: 2.95e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2277710331  35 AFTYYRDGMSAQSEGNYAEALQNYYEAMRL---EIDPYDRSY--ILYNIGLIHTSNGEHTKALEYYFRALER 101
Cdd:pfam13424   3 ATALNNLAAVLRRLGRYDEALELLEKALEIarrLLGPDHPLTatTLLNLGRLYLELGRYEEALELLERALAL 74
PilF COG3063
Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];
33-107 8.28e-04

Type IV pilus assembly protein PilF/PilW [Cell motility, Extracellular structures];


Pssm-ID: 442297 [Multi-domain]  Cd Length: 94  Bit Score: 36.69  E-value: 8.28e-04
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2277710331  33 KEAFTYYRDGMSAQSEGNYAEALQnYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQ 107
Cdd:COG3063    24 DNADALNNLGLLLLEQGRYDEAIA-LEKA--LKLDP-NNAEALLNLAELLLELGDYDEALAYLERALELDPSALR 94
CpoB COG1729
Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane ...
 48-152 9.75e-04

Cell division protein CpoB, coordinates peptidoglycan biosynthesis and outer membrane constriction [Cell cycle control, cell division, chromosome partitioning];


Pssm-ID: 441335 [Multi-domain]  Cd Length: 113  Bit Score: 36.89  E-value: 9.75e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  48 EGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNP---FLPQAFNNMAVIchyrgeqAI 124
Cdd:COG1729     6 AGDYDEAIAAFKAFLKRYPNSPLAPDALYWLGEAYYALGDYDEAAEAFEKLLKRYPdspKAPDALLKLGLS-------YL 78

                          90       100
                  ....*....|....*....|....*...
gi 2277710331 125 RQGDseiaeawFDQAAEYWKQAIALTPG 152
Cdd:COG1729    79 ELGD-------YDKARATLEELIKKYPD 99
M28_like cd05640
M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase ...
 96-154 2.24e-03

M28 Zn-peptidase; uncharacterized subfamily; Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.


Pssm-ID: 349893 [Multi-domain]  Cd Length: 281  Bit Score: 37.43  E-value: 2.24e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2277710331  96 FRALERNPFLPQAFnnMAVICHYRGEQAIRQGDsEIAEAWFDQAAEYWKQAIALTPGNY 154
Cdd:cd05640     8 LVRMERNPHDPSAF--LAAAAEYIAQELVGSGY-NVTSHFFSHQEGVYANLIADLPGSY 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 42-141 2.88e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 37.02  E-value: 2.88e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFnnmavichYRGE 121
Cdd:COG2956   185 AELYLEQGDYEEAIAALERA--LEQDP-DYLPALPRLAELYEKLGDPEEALELLRKALELDPSDDLLL--------ALAD 253

                          90       100
                  ....*....|....*....|
gi 2277710331 122 QAIRQGDSEIAEAWFDQAAE 141
Cdd:COG2956   254 LLERKEGLEAALALLERQLR 273
PEP_TPR_lipo TIGR02917
putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly ...
 42-162 3.24e-03

putative PEP-CTERM system TPR-repeat lipoprotein; This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.


Pssm-ID: 274350 [Multi-domain]  Cd Length: 899  Bit Score: 37.37  E-value: 3.24e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  42 GMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPflpqafNNMAVICHYRGE 121
Cdd:TIGR02917 472 GAIYLGKGDLAKAREAFEKA--LSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP------KNLRAILALAGL 542

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2277710331 122 QAiRQGDSEIAEAWFDQAAEYWKQAI--ALTPGNYIEAQNWLK 162
Cdd:TIGR02917 543 YL-RTGNEEEAVAWLEKAAELNPQEIepALALAQYYLGKGQLK 584
TPR_12 pfam13424
Tetratricopeptide repeat;
70-145 3.30e-03

Tetratricopeptide repeat;


Pssm-ID: 315987 [Multi-domain]  Cd Length: 77  Bit Score: 34.67  E-value: 3.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  70 DRSYILYNIGLIHTSNGEHTKALEYYFRALER--------NPFLPQAFNNMAVICHyrgeqaiRQGDSEIAEAWFDQAAE 141
Cdd:pfam13424   1 DVATALNNLAAVLRRLGRYDEALELLEKALEIarrllgpdHPLTATTLLNLGRLYL-------ELGRYEEALELLERALA 73


                  ....
gi 2277710331 142 YWKQ 145
Cdd:pfam13424  74 LAEK 77
NlpI COG4785
Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];
35-148 4.30e-03

Lipoprotein NlpI, contains TPR repeats [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 443815 [Multi-domain]  Cd Length: 223  Bit Score: 36.43  E-value: 4.30e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2277710331  35 AFTYYRDGMSAQSEGNYAEALQNYYEAmrLEIDPyDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAV 114
Cdd:COG4785   107 AEAYNNRGLAYLLLGDYDAALEDFDRA--LELDP-DYAYAYLNRGIALYYLGRYELAIADLEKALELDPNDPERALWLYL 183

                          90       100       110       120
                  ....*....|....*....|....*....|....*....|...
gi 2277710331 115 IchyRGEQAIRQGDSEIAEAWF---------DQAAEYWKQAIA 148
Cdd:COG4785   184 A---ERKLDPEKALALLLEDWAtayllqgdtEEARELFKLALA 223
EST1_DNA_bind pfam10373
Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the ...
 76-115 7.05e-03

Est1 DNA/RNA binding domain; Est1 is a protein which recruits or activates telomerase at the site of polymerization. This is the DNA/RNA binding domain of EST1.


Pssm-ID: 431239  Cd Length: 279  Bit Score: 35.85  E-value: 7.05e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 2277710331  76 YN-IGLIHTSNGEHTKALEYYFRAL-ERNPFlPQAFNNMAVI 115
Cdd:pfam10373  19 YNqLGVIALYVGNHLDAVYYFLRSLlSRNPF-PTAKNNLELL 59
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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