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Conserved domains on  [gi|2287448955|gb|UVB73674|]
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cytochrome b, partial (mitochondrion) [Testudo graeca]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 632.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00119   56 YTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00119  136 WGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSN 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00119  216 TDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00119  296 AASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLG 371
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 632.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00119   56 YTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00119  136 WGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSN 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00119  216 TDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00119  296 AASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLG 371
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-316 7.09e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 344.85  E-value: 7.09e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYlyKE----TWNTGIILLLLVMATAFMG 76
Cdd:COG1290    64 YKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTG 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  77 YVLPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLH-FLLPFATIGLAMVHLLFLHETGSNNPT 155
Cdd:COG1290   142 YSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPP 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 156 G----LNSDTDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNllGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIP 231
Cdd:COG1290   222 GperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIP 299

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 232 --NKLGGVLALLFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVenPFITIGQVASILYFTILL 309
Cdd:COG1290   300 gsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFL 377


                  ....*..
gi 2287448955 310 ILMPAAG 316
Cdd:COG1290   378 IVLPILA 384
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-152 5.64e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 223.78  E-value: 5.64e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFMGYV 78
Cdd:cd00284    47 YTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYV 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSN 152
Cdd:cd00284   127 LPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-150 6.52e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 207.62  E-value: 6.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYG--SYLYKETWNTGIILLLLVMATAFMGYV 78
Cdd:pfam00033  38 YTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYV 117

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETG 150
Cdd:pfam00033 118 LPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 182-285 6.90e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 6.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 182 LTILLALTLFSPNLLGDPdnftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILALFLMPTLHTSKQRST 261
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 2287448955 262 TF-RPLNQTLFWCLTanlLILTWIG 285
Cdd:TIGR01156 123 PFrRPVATTVFLFGT---VVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 632.71  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00119   56 YTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00119  136 WGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSN 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00119  216 TDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00119  296 AASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLG 371
CYTB MTH00131
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 609.73  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00131   55 YTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLP 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00131  135 WGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSD 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00131  215 ADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00131  295 LFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAG 370
CYTB MTH00100
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 600.86  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00100   55 YTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLP 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00100  135 WGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSD 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00100  215 SDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 294

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00100  295 LLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIAS 370
CYTB MTH00074
cytochrome b; Provisional
 1-316 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 591.66  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00074   56 YTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00074  136 WGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSN 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00074  216 PDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00074  296 LASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTG 371
CYTB MTH00191
cytochrome b; Provisional
 1-313 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 564.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00191   52 YTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLP 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00191  132 WGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSD 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00191  212 SDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLAL 291

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMP 313
Cdd:MTH00191  292 VMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFP 364
CYTB MTH00156
cytochrome b; Provisional
 1-312 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 550.93  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00156   45 YTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLP 124

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00156  125 WGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSN 204

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00156  205 IDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIAL 284

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILM 312
Cdd:MTH00156  285 VMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-311 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 534.87  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00145   56 YTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00145  136 WGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSD 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00145  216 GDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLIL 311
Cdd:MTH00145  296 VMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLIL 366
CYTB MTH00034
cytochrome b; Validated
 1-316 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 520.42  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00034   55 YTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLP 134

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00034  135 WGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSN 214

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00034  215 YDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIAL 294

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00034  295 VAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLIS 370
CYTB MTH00016
cytochrome b; Validated
 1-311 5.19e-178

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 496.89  E-value: 5.19e-178
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00016   56 YTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00016  136 WGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSN 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00016  216 SDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAM 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLIL 311
Cdd:MTH00016  296 FASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMIN 366
CYTB MTH00053
cytochrome b; Provisional
 1-316 1.20e-161

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 455.70  E-value: 1.20e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00053   56 YCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00053  136 WGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSD 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00053  216 IDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00053  296 VFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAG 371
CYTB MTH00022
cytochrome b; Validated
 1-316 4.67e-160

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 451.46  E-value: 4.67e-160
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00022   54 YCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLP 133

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00022  134 WGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSS 213

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00022  214 VDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAM 293

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00022  294 FFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLG 369
CYTB MTH00224
cytochrome b; Provisional
 1-310 1.56e-156

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 442.44  E-value: 1.56e-156
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00224   56 YAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLP 135

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00224  136 WGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINAD 215

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00224  216 SARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVAL 295

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 241 LFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLI 310
Cdd:MTH00224  296 FAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00033
cytochrome b; Provisional
 1-316 5.08e-119

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 347.70  E-value: 5.08e-119
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00033   52 YRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLP 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00033  132 WGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGL 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLTILLALTLFS--PNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVL 238
Cdd:MTH00033  212 SDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVL 291

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2287448955 239 ALLFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPV-ENPFITIGQVASILYFTILLILMPAAG 316
Cdd:MTH00033  292 ALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLG 370
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-316 7.09e-118

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 344.85  E-value: 7.09e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYlyKE----TWNTGIILLLLVMATAFMG 76
Cdd:COG1290    64 YKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEAFTG 141

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  77 YVLPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLH-FLLPFATIGLAMVHLLFLHETGSNNPT 155
Cdd:COG1290   142 YSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPP 221

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 156 G----LNSDTDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNllGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIP 231
Cdd:COG1290   222 GperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIP 299

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 232 --NKLGGVLALLFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVenPFITIGQVASILYFTILL 309
Cdd:COG1290   300 gsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYFAFFL 377


                  ....*..
gi 2287448955 310 ILMPAAG 316
Cdd:COG1290   378 IVLPILA 384
CYTB MTH00086
cytochrome b; Provisional
 1-312 1.46e-113

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 332.67  E-value: 1.46e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00086   44 YTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLV 123

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGLNSD 160
Cdd:MTH00086  124 WAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGD 203

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 161 TDKIPFHPYFSYKDLLGLILMLtILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLAL 240
Cdd:MTH00086  204 YDKICFGPEYWNKDAYNIIFWL-VFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIAL 282

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2287448955 241 LFSILALFLMPTLHTSkqrSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLILM 312
Cdd:MTH00086  283 LMSIVVFYFFIFVNNY---TSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-310 3.87e-85

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 259.92  E-value: 3.87e-85
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKETWNTGIILLLLVMATAFMGYVLP 80
Cdd:MTH00046   46 YVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  81 WGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSNNPTGL-NS 159
Cdd:MTH00046  126 WHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNG 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 160 DTDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGvLA 239
Cdd:MTH00046  206 YSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LV 284

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2287448955 240 LLFSILALFLMPTlhtsKQRSTTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVASILYFTILLI 310
Cdd:MTH00046  285 LVLSFLFFLWVPT----FNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-152 5.64e-73

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 223.78  E-value: 5.64e-73
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSY--LYKETWNTGIILLLLVMATAFMGYV 78
Cdd:cd00284    47 YTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFMGYV 126

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETGSN 152
Cdd:cd00284   127 LPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-150 6.52e-67

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 207.62  E-value: 6.52e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYG--SYLYKETWNTGIILLLLVMATAFMGYV 78
Cdd:pfam00033  38 YTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYV 117

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLHFLLPFATIGLAMVHLLFLHETG 150
Cdd:pfam00033 118 LPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 153-300 6.18e-55

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 175.53  E-value: 6.18e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 153 NPTGLNSDTDKIPFHPYFSYKDLLGLILMLTILLALTLFSPNLLGDPDNFTPANPLSTPPHIKPEWYFLFAYAILRSIPN 232
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2287448955 233 KLGGVLALLFSILALFLMPTLHTSKQRStTFRPLNQTLFWCLTANLLILTWIGSQPVENPFITIGQVA 300
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
34-199 6.09e-50

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 163.57  E-value: 6.09e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955  34 SIFFMCIYLHIGRGLYYGSYLYKE--TWNTGIILLLLVMATAFMGYVLPWGQMSFWGATVITNLLSATPYIGNTLVQWIW 111
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 112 GGFSVDNATLTRFFTLHF-LLPFATIGLAMVHLLFLHETGSNNPTGLNSDTDKIPFHPYFSYKDLLGLILMLTILLALTL 190
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2287448955 191 FSPNLLGDP 199
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
204-304 2.54e-46

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 151.86  E-value: 2.54e-46
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 204 PANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILALFLMPTLHTSKQRSTTFRPLNQTLFWCLTANLLILTW 283
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2287448955 284 IGSQPVENPFITIGQVASILY 304
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 1-154 1.53e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 117.51  E-value: 1.53e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKE--TWNTGIILLLLVMATAFMGYV 78
Cdd:PRK03735   66 YVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFTGYL 145

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLH-FLLPFATIGLAMVHLLFLHETGSNNP 154
Cdd:PRK03735  146 LPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 1-154 5.22e-30

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 113.28  E-value: 5.22e-30
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955   1 YSPNISLAFSSVAHITRDVQYGWLIRNMHANGASIFFMCIYLHIGRGLYYGSYLYKE--TWNTGIILLLLVMATAFMGYV 78
Cdd:CHL00070   58 YRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGYS 137

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2287448955  79 LPWGQMSFWGATVITNLLSATPYIGNTLVQWIWGGFSVDNATLTRFFTLH-FLLPFATIGLAMVHLLFLHETGSNNP 154
Cdd:CHL00070  138 LPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGP 214
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 175-285 6.22e-11

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 59.81  E-value: 6.22e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 175 LLGLILMLTILL--ALTLFSPNLLGDPdnftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILALFLMPT 252
Cdd:COG5679    40 IFPVVILGTIALciGLAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPF 114

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2287448955 253 LHTSKQRSTTF-RPLNQTLFWCLTanlLILTWIG 285
Cdd:COG5679   115 IENVNKFQNPFrRPVATAVFLFGT---LVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 182-285 6.90e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.11  E-value: 6.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 182 LTILLALTLFSPNLLGDPdnftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILALFLMPTLHTSKQRST 261
Cdd:TIGR01156  48 IACVVGLAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENVNKFQN 122

                          90       100
                  ....*....|....*....|....*
gi 2287448955 262 TF-RPLNQTLFWCLTanlLILTWIG 285
Cdd:TIGR01156 123 PFrRPVATTVFLFGT---VVALWLG 144
petD CHL00058
cytochrome b6/f complex subunit IV
 182-271 1.10e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 56.16  E-value: 1.10e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2287448955 182 LTILLALTLFSPNLLGDPdnftpANPLSTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILALFLMPTLHTSKQRST 261
Cdd:CHL00058   48 IACNVGLAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENVNKFQN 122

                          90
                  ....*....|.
gi 2287448955 262 TF-RPLNQTLF 271
Cdd:CHL00058  123 PFrRPVATTVF 133
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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