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Conserved domains on  [gi|2294228765|gb|UVY96561|]
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cytochrome b, partial (mitochondrion) [Osmia lignaria]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 6.90e-179

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 500.85  E-value: 6.90e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  15 LNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFY 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  95 FLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 175 NNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQNPNML 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 255 NDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFIN 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2294228765 335 NFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNM 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 6.90e-179

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 500.85  E-value: 6.90e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  15 LNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFY 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  95 FLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 175 NNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQNPNML 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 255 NDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFIN 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2294228765 335 NFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNM 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
25-378 1.84e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 295.16  E-value: 1.84e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  25 HPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISR 104
Cdd:COG1290    30 YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFR 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 105 NIFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRF 182
Cdd:COG1290   110 GFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRF 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 183 FSLH-FILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYK----IPFHSYFSSKDILGFFMIFMSFSFIILQNPNmlNDP 257
Cdd:COG1290   190 FALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPP 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 258 DNWSIANPMNTPQHIKPEWYFLFAYSILRAIP--NKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFINN 335
Cdd:COG1290   268 PNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVF 347

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2294228765 336 FIILTWLGSQPIdyPYTLINLIFTNMYFMFFFSNMYFMKFWDK 378
Cdd:COG1290   348 FIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIEK 388
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 26-210 1.69e-66

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 209.15  E-value: 1.69e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:cd00284    14 PPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFF 183
Cdd:cd00284    94 LYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFF 173

                         170       180
                  ....*....|....*....|....*..
gi 2294228765 184 SLHFILPLLILMMVIMHLYFLHMTGSN 210
Cdd:cd00284   174 ALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
26-208 3.90e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 192.60  E-value: 3.90e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:pfam00033   5 PVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFF 183
Cdd:pfam00033  85 LYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFF 164

                         170       180
                  ....*....|....*....|....*
gi 2294228765 184 SLHFILPLLILMMVIMHLYFLHMTG 208
Cdd:pfam00033 165 SLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 250-353 5.23e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 5.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPdnwsiANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMN-HKFKTNKFYPLNNFL 328
Cdd:TIGR01156  58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTV 132

                          90       100
                  ....*....|....*....|....*...
gi 2294228765 329 FWFfinNFIILTWLG---SQPIDYPYTL 353
Cdd:TIGR01156 133 FLF---GTVVALWLGigaTLPIDKSLTL 157
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 15-370 6.90e-179

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 500.85  E-value: 6.90e-179
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  15 LNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFY 94
Cdd:MTH00156    1 LKIINNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  95 FLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSI 174
Cdd:MTH00156   81 FICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 175 NNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQNPNML 254
Cdd:MTH00156  161 DNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLL 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 255 NDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFIN 334
Cdd:MTH00156  241 GDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVN 320

                         330       340       350
                  ....*....|....*....|....*....|....*.
gi 2294228765 335 NFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNM 370
Cdd:MTH00156  321 IVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 7-381 1.41e-172

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 485.95  E-value: 1.41e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   7 KIFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYI 86
Cdd:MTH00145    4 PLRKSHPVLKVVNGSLYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSL 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  87 HLNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVE 166
Cdd:MTH00145   84 HANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVE 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 167 WIWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFI 246
Cdd:MTH00145  164 WVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFL 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 247 ILQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNN 326
Cdd:MTH00145  244 VLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQ 323

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2294228765 327 FLFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNMYFMKFWDKIIY 381
Cdd:MTH00145  324 VLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLFFLILPLVQKLWDNILD 378
CYTB MTH00119
cytochrome b; Provisional
 10-367 2.03e-165

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 467.84  E-value: 2.03e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  10 KSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLN 89
Cdd:MTH00119    7 KSHPLLKIINNSLIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  90 GASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIW 169
Cdd:MTH00119   87 GASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 170 GGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQ 249
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLF 329
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         330       340       350
                  ....*....|....*....|....*....|....*...
gi 2294228765 330 WFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFF 367
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILL 364
CYTB MTH00191
cytochrome b; Provisional
 8-367 1.31e-161

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 457.45  E-value: 1.31e-161
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   8 IFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIH 87
Cdd:MTH00191    1 MRKTHPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  88 LNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEW 167
Cdd:MTH00191   81 ANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQW 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 168 IWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFII 247
Cdd:MTH00191  161 LWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLV 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 248 LQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNF 327
Cdd:MTH00191  241 LFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQV 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2294228765 328 LFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFF 367
Cdd:MTH00191  321 VFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFL 360
CYTB MTH00016
cytochrome b; Validated
 10-381 8.92e-158

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 448.36  E-value: 8.92e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  10 KSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLN 89
Cdd:MTH00016    7 KTHPLIKIMNGSLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  90 GASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIW 169
Cdd:MTH00016   87 GASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 170 GGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQ 249
Cdd:MTH00016  167 GGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLF 329
Cdd:MTH00016  247 WPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILF 326

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2294228765 330 WFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNMYFMKFWDKIIY 381
Cdd:MTH00016  327 WLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFYFMINPLLMKLWDKLLK 378
CYTB MTH00100
cytochrome b; Provisional
 8-364 2.98e-154

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 439.46  E-value: 2.98e-154
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   8 IFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIH 87
Cdd:MTH00100    4 IRKTHPLMKIINHSFIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  88 LNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEW 167
Cdd:MTH00100   84 ANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 168 IWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFII 247
Cdd:MTH00100  164 IWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLV 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 248 LQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNF 327
Cdd:MTH00100  244 LFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQC 323

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2294228765 328 LFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFM 364
Cdd:MTH00100  324 LFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00131
cytochrome b; Provisional
 10-366 3.28e-151

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 431.77  E-value: 3.28e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  10 KSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLN 89
Cdd:MTH00131    6 KTHPLLKIANDALVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHAN 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  90 GASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIW 169
Cdd:MTH00131   86 GASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIW 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 170 GGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQ 249
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLF 329
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         330       340       350
                  ....*....|....*....|....*....|....*..
gi 2294228765 330 WFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFF 366
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLF 362
CYTB MTH00074
cytochrome b; Provisional
 10-377 2.45e-150

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 429.49  E-value: 2.45e-150
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  10 KSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLN 89
Cdd:MTH00074    7 KTHPLLKIINNSFIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHAN 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  90 GASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIW 169
Cdd:MTH00074   87 GASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 170 GGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQ 249
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLF 329
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*...
gi 2294228765 330 WFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNMYFMKFWD 377
Cdd:MTH00074  327 WLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLE 374
CYTB MTH00034
cytochrome b; Validated
 8-367 9.99e-141

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 405.24  E-value: 9.99e-141
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   8 IFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIH 87
Cdd:MTH00034    4 LRKSHPLFKILNSSLIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIH 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  88 LNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEW 167
Cdd:MTH00034   84 ANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQW 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 168 IWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFII 247
Cdd:MTH00034  164 IWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLA 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 248 LQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNF 327
Cdd:MTH00034  244 LLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQI 323

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|
gi 2294228765 328 LFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFF 367
Cdd:MTH00034  324 AFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFL 363
CYTB MTH00022
cytochrome b; Validated
 6-367 1.84e-138

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 399.46  E-value: 1.84e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   6 LKIFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRY 85
Cdd:MTH00022    1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  86 IHLNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIV 165
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 166 EWIWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSF 245
Cdd:MTH00022  161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 246 IILQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLN 325
Cdd:MTH00022  241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLG 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|..
gi 2294228765 326 NFLFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFFF 367
Cdd:MTH00022  321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFL 362
CYTB MTH00053
cytochrome b; Provisional
 8-366 1.66e-133

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 386.75  E-value: 1.66e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765   8 IFKSNKFLNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIH 87
Cdd:MTH00053    5 IRKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLH 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  88 LNGASFYFLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEW 167
Cdd:MTH00053   85 ANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRW 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 168 IWGGFSINNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFII 247
Cdd:MTH00053  165 VWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIV 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 248 LQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNF 327
Cdd:MTH00053  245 FLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKI 324

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2294228765 328 LFWFFINNFIILTWLGSQPIDYPYTLINLIFTNMYFMFF 366
Cdd:MTH00053  325 LFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYF 363
CYTB MTH00224
cytochrome b; Provisional
 15-380 3.36e-132

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 383.50  E-value: 3.36e-132
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  15 LNIIYSSFNIHPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFY 94
Cdd:MTH00224   12 IKILNGSLIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMF 91

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  95 FLCMYMHISRNIFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSI 174
Cdd:MTH00224   92 FLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAV 171

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 175 NNATLNRFFSLHFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQNPNML 254
Cdd:MTH00224  172 DNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLF 251

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 255 NDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFIN 334
Cdd:MTH00224  252 TDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVT 331

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2294228765 335 NFIILTWLGSQPIDYPYTLINLIFTNMYFMFFFSNMYFMKFWDKII 380
Cdd:MTH00224  332 SWAILTWIGGRPVEDPFEGIGQVFTILYFSYFIISPAISKLWDDLL 377
CYTB MTH00033
cytochrome b; Provisional
 26-381 4.13e-105

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 314.57  E-value: 4.13e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:MTH00033   19 PTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRG 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFFSL 185
Cdd:MTH00033   99 LYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSL 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 186 HFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQN--PNMLNDPDNWSIA 263
Cdd:MTH00033  179 HYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQA 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 264 NPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFINNFIILTWLG 343
Cdd:MTH00033  259 NPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIG 338

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2294228765 344 SQPIDY-PYTLINLIFTNMYFMFFFSNMYFMKFWDKIIY 381
Cdd:MTH00033  339 SAPAGAdPYVLIGRIATIFYFGYFLVLVPLLGYLSNLFY 377
CYTB MTH00086
cytochrome b; Provisional
 26-374 8.60e-100

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 299.93  E-value: 8.60e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:MTH00086   11 PSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKG 90

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFFSL 185
Cdd:MTH00086   91 LFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVL 170

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 186 HFILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGfFMIFMSFSFIILQNPNMLNDPDNWSIANP 265
Cdd:MTH00086  171 HFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLFYPFNLGDPEMFIEADP 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 266 MNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNhkfKTNKFYPLNNFLFWFFINNFIILTWLGSQ 345
Cdd:MTH00086  250 MMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNN---YTSCLNKLNKFLVFSFIVVNVILSWLGQC 326

                         330       340
                  ....*....|....*....|....*....
gi 2294228765 346 PIDYPYTLINLIFTNMYFMFFFSNMYFMK 374
Cdd:MTH00086  327 LVEYPFLFLSQIFSFIYFFLILLMLFLFY 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
25-378 1.84e-97

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 295.16  E-value: 1.84e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  25 HPTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISR 104
Cdd:COG1290    30 YPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFR 109

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 105 NIFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRF 182
Cdd:COG1290   110 GFFYGAYKKPRelNWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRF 189

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 183 FSLH-FILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYK----IPFHSYFSSKDILGFFMIFMSFSFIILQNPNmlNDP 257
Cdd:COG1290   190 FALHvLLLPALLLALVVLHLWLLHRHGHNNPPGPERKKTEkvdgVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPP 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 258 DNWSIANPMNTPQHIKPEWYFLFAYSILRAIP--NKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFINN 335
Cdd:COG1290   268 PNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVF 347

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|...
gi 2294228765 336 FIILTWLGSQPIdyPYTLINLIFTNMYFMFFFSNMYFMKFWDK 378
Cdd:COG1290   348 FIVLTILGANPP--IATLLGSINTVTYFAFFLIVLPILAFIEK 388
CYTB MTH00046
cytochrome b; Validated
 26-367 2.37e-67

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 216.77  E-value: 2.37e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:MTH00046   13 PTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRA 92

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFFSL 185
Cdd:MTH00046   93 LYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSV 172

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 186 HFILPLLILMMVIMHLYFLHMTGSNNPM----GTNSNIYkipFHSYFSSKDILGFFMIFMSFSFIILQNPNMLNDPDNWS 261
Cdd:MTH00046  173 HICLGFVILGLMVVHLFYLHKSGSSNPLfssnGYSDVVY---FHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 262 IANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGvlaLLFSILILFILPFMMNHkfKTNKFYPLNNFLFWFFINNFIILTW 341
Cdd:MTH00046  250 EADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG---LVLVLSFLFFLWVPTFN--GSSVYSVWRQVNFWLIVSLFFSLSY 324

                         330       340
                  ....*....|....*....|....*.
gi 2294228765 342 LGSQPIDYPYTLINLIFTNMYFMFFF 367
Cdd:MTH00046  325 LGGCHPEYPYLLISQLFSVLMVLLLF 350
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 26-210 1.69e-66

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 209.15  E-value: 1.69e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:cd00284    14 PPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRG 93

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFF 183
Cdd:cd00284    94 LYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFF 173

                         170       180
                  ....*....|....*....|....*..
gi 2294228765 184 SLHFILPLLILMMVIMHLYFLHMTGSN 210
Cdd:cd00284   174 ALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
26-208 3.90e-60

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 192.60  E-value: 3.90e-60
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  26 PTPVNINYLWNFGSILGILLLIQIISGFILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRN 105
Cdd:pfam00033   5 PVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRG 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 106 IFYQCYSSQH--VWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFF 183
Cdd:pfam00033  85 LYYGGFSYPRelTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFF 164

                         170       180
                  ....*....|....*....|....*
gi 2294228765 184 SLHFILPLLILMMVIMHLYFLHMTG 208
Cdd:pfam00033 165 SLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 211-358 4.40e-42

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 144.33  E-value: 4.40e-42
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 211 NPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIILQNPNMLNDPDNWSIANPMNTPQHIKPEWYFLFAYSILRAIPN 290
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2294228765 291 KLGGVLALLFSILILFILPFMMNHKFKtNKFYPLNNFLFWFFINNFIILTWLGSQPIDYPYTLINLIF 358
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKR-SQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
263-362 1.10e-38

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.76  E-value: 1.10e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 263 ANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMNHKFKTNKFYPLNNFLFWFFINNFIILTWL 342
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 2294228765 343 GSQPIDYPYTLINLIFTNMY 362
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
92-257 8.38e-35

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 125.82  E-value: 8.38e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  92 SFYFLCMYMHISRNIFYQCYSS--QHVWNIGIIILLTSMGTAFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIW 169
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKprELNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 170 GGFSINNATLNRFFSLHF-ILPLLILMMVIMHLYFLHMTGSNNPMGTNSNIYKIPFHSYFSSKDILGFFMIFMSFSFIIL 248
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2294228765 249 QNPNMLNDP 257
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 53-213 5.17e-29

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 112.11  E-value: 5.17e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  53 FILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRNIFYQCYSS--QHVWNIGIIILLTSMGT 130
Cdd:PRK03735   60 MFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKprELNWVVGVLIFFVTVGL 139

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 131 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFFSLH-FILPLLILMMVIMHLYFLHMTGS 209
Cdd:PRK03735  140 GFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGI 219


                  ....
gi 2294228765 210 NNPM 213
Cdd:PRK03735  220 SGPL 223
petB CHL00070
cytochrome b6
 53-213 4.01e-27

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 107.11  E-value: 4.01e-27
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765  53 FILSMHYCPNINYAFDSIIHIMKNVNSGWMFRYIHLNGASFYFLCMYMHISRNIFYQCYSS--QHVWNIGIIILLTSMGT 130
Cdd:CHL00070   52 FAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKprELTWVTGVVLAVLTVSF 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 131 AFMGYVLPWGQMSFWGATVITNLLSAIPYIGQTIVEWIWGGFSINNATLNRFFSLH-FILPLLILMMVIMHLYFLHMTGS 209
Cdd:CHL00070  132 GVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGI 211


                  ....
gi 2294228765 210 NNPM 213
Cdd:CHL00070  212 SGPL 215
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 250-353 1.37e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 65.20  E-value: 1.37e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPdnwsiANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMN-HKFKTNKFYPLNNFL 328
Cdd:COG5679    59 DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIENvNKFQNPFRRPVATAV 133

                          90       100
                  ....*....|....*....|....*...
gi 2294228765 329 FWFfinNFIILTWLG---SQPIDYPYTL 353
Cdd:COG5679   134 FLF---GTLVTLWLGigaALPIDKSLTL 158
petD CHL00058
cytochrome b6/f complex subunit IV
 251-353 5.49e-11

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 60.40  E-value: 5.49e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 251 PNMLNDPdnwsiANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMN-HKFKTNKFYPLNNFLF 329
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLENvNKFQNPFRRPVATTVF 133

                          90       100
                  ....*....|....*....|....*..
gi 2294228765 330 WFfinNFIILTWLG---SQPIDYPYTL 353
Cdd:CHL00058  134 LI---GTAVALWLGigaTLPIDKSLTL 157
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 250-353 5.23e-10

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 57.50  E-value: 5.23e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294228765 250 NPNMLNDPdnwsiANPMNTPQHIKPEWYFLFAYSILRAIPNKLGGVLALLFSILILFILPFMMN-HKFKTNKFYPLNNFL 328
Cdd:TIGR01156  58 DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIENvNKFQNPFRRPVATTV 132

                          90       100
                  ....*....|....*....|....*...
gi 2294228765 329 FWFfinNFIILTWLG---SQPIDYPYTL 353
Cdd:TIGR01156 133 FLF---GTVVALWLGigaTLPIDKSLTL 157
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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