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Conserved domains on  [gi|2294229666|gb|UVY96672|]
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NADH dehydrogenase subunit 4, partial (mitochondrion) [Osmia lignaria propinqua]

Protein Classification

NADH dehydrogenase subunit 4( domain architecture ID 11475934)

NADH dehydrogenase subunit 4 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-423 1.24e-101

NADH dehydrogenase subunit 4; Provisional


:

Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 309.39  E-value: 1.24e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   1 IYKKLYFISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSINQEKNL----ILCLNLLMLM 76
Cdd:MTH00163   17 LKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKnnysNLFLFLILFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  77 LIVLVMNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESM 156
Cdd:MTH00163   97 LIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 157 kFKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00163  177 -GSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLV 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00163  256 GGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKG 335

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY-KSLS 395
Cdd:MTH00163  336 LLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGlYSCS 415

                         410       420
                  ....*....|....*....|....*...
gi 2294229666 396 SGKLINYLILLFHWIPLNMVILNLSIFI 423
Cdd:MTH00163  416 SGKVREYLLLFLHWLPLNLLILKSDLFM 443
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-423 1.24e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 309.39  E-value: 1.24e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   1 IYKKLYFISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSINQEKNL----ILCLNLLMLM 76
Cdd:MTH00163   17 LKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKnnysNLFLFLILFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  77 LIVLVMNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESM 156
Cdd:MTH00163   97 LIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 157 kFKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00163  177 -GSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLV 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00163  256 GGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKG 335

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY-KSLS 395
Cdd:MTH00163  336 LLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGlYSCS 415

                         410       420
                  ....*....|....*....|....*...
gi 2294229666 396 SGKLINYLILLFHWIPLNMVILNLSIFI 423
Cdd:MTH00163  416 SGKVREYLLLFLHWLPLNLLILKSDLFM 443
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 84-387 2.52e-41

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 152.54  E-value: 2.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLN-- 161
Cdd:COG1008   128 FLALDLFLFYVFWELMLIPMYFLIGIWG-GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPlt 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 --KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNFLEMNKYFIEIGLLGS 238
Cdd:COG1008   207 aqLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALpLFPEASAYFAPLLAALGVIGI 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 239 IILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVL 318
Cdd:COG1008   287 IYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLA 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2294229666 319 IFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGK 387
Cdd:COG1008   367 KRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGP 435
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 24-352 3.84e-35

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 135.45  E-value: 3.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  24 SFFMEWI---NLSLNFGLNFYSYGIIMMSLWIFGLVFMSI--NQEKNLILCLNLLMLMLIVLVMNFFSMNMLMFYFFFEV 98
Cdd:TIGR01972  58 TEDIPWIpalGISYHLGVDGISLLLVLLTALLTLLAILASweSIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  99 SLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMG---SLSFLLLESMKFKLNKILFLYLIMGFLVK 175
Cdd:TIGR01972 138 MLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfDLLELLNLPLPFGVQTWLFLAFFIAFAVK 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 176 MPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNFLEMNKYFIEIGLLGSIILSLSCFRQIDMKIL 254
Cdd:TIGR01972 217 VPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRL 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 255 VAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPSMSLMWFLMCSS 334
Cdd:TIGR01972 297 IAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMA 376

                         330
                  ....*....|....*...
gi 2294229666 335 NMAAPFSLNLVGEIFLLM 352
Cdd:TIGR01972 377 SLGLPGTSGFVGEFLILL 394
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 86-363 1.89e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 124.35  E-value: 1.89e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  86 SMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFK-----L 160
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSII 240
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 241 LSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYL-LNLCYLETHSRLMIINKGVLI 319
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCaGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2294229666 320 FMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMI 363
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLV 284
 
Name Accession Description Interval E-value
ND4 MTH00163
NADH dehydrogenase subunit 4; Provisional
 1-423 1.24e-101

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214443 [Multi-domain]  Cd Length: 445  Bit Score: 309.39  E-value: 1.24e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   1 IYKKLYFISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSINQEKNL----ILCLNLLMLM 76
Cdd:MTH00163   17 LKNSWWLVQSLLFLLSFLFMLLFSLSFYFSNISYFFGLDLLSFGLILLSFWICMLMILSSESVYKKnnysNLFLFLILFL 96

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  77 LIVLVMNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESM 156
Cdd:MTH00163   97 LIFLLLTFSSMNLLLFYIFFESSLIPTLFLILGWGYQPERLQAGIYLLFYTLFASLPLLVGIFYLYNNSGSLSFFLLNFF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 157 kFKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00163  177 -GSLNFLWYLSMILAFLVKMPMFFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLLRVMSFFSKLGLKFNYIWISISLV 255

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00163  256 GGVIVSLICLRQVDLKSLIAYSSVAHMGLVLGGLMTFSYWGLMGSLLMMIGHGLCSSGLFCLANIIYERLGSRSLLINKG 335

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY-KSLS 395
Cdd:MTH00163  336 LLNFMPSMSLWWFLLSSSNMAAPPSLNLLGEISLINSLISWSKLSMIFLMLLSFFSAAYSLYLYSYSQHGKYYSGlYSCS 415

                         410       420
                  ....*....|....*....|....*...
gi 2294229666 396 SGKLINYLILLFHWIPLNMVILNLSIFI 423
Cdd:MTH00163  416 SGKVREYLLLFLHWLPLNLLILKSDLFM 443
ND4 MTH00150
NADH dehydrogenase subunit 4; Provisional
 17-418 2.27e-76

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214435 [Multi-domain]  Cd Length: 417  Bit Score: 243.21  E-value: 2.27e-76
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  17 FLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSINQEKNLILCLNLLMLMLIV----LVMNFFSMNMLMF 92
Cdd:MTH00150    1 LSLLLLYSSFSSYESLSELFSVDSMSSLLISLSLWISGLMMLASQKSVKLRNKSSSFSLLVLLlcliLVLAFSVSSLLMF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  93 YFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESM--KFKLNKILFLYLIM 170
Cdd:MTH00150   81 YFFFEASLIPTLLLILGWGYQPERLQAGMYMMLYTVGASLPLLLVILWMSSSYGSSFMLLISSLrkLLSSMGLWGLLVFL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 171 GFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSIILSLSCFRQID 250
Cdd:MTH00150  161 AFLVKLPMYPFHLWLPKAHVEAPVAGSMILAGILLKLGGYGILRMMMVFSLSSSSFSIFLISLSLWGGVLTSLICLRQSD 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 251 MKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPSMSLMWFL 330
Cdd:MTH00150  241 VKSLIAYSSVGHMSLVLAGVLSNTSWGWVGALIMMVSHGFCSSGLFCLANYTYEKVHSRSLFLSKGMLMLYPSLSLWWFL 320

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 331 MCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKN-FFYKSLSSGKLINYLILLFHW 409
Cdd:MTH00150  321 FCIINMAAPPSLNLLSEIMIFPSLISYSPWFFVPLGLMVFLSGLYSLYLYTSIQHGGSsSFLKPFNELKSSEMLLLLLHW 400


                  ....*....
gi 2294229666 410 IPLNMVILN 418
Cdd:MTH00150  401 VPLLLLILK 409
ND4 MTH00205
NADH dehydrogenase subunit 4; Provisional
 6-423 1.32e-67

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214457 [Multi-domain]  Cd Length: 448  Bit Score: 221.39  E-value: 1.32e-67
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   6 YFISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMS----INQEKNLILCLNLLMLMLIVLV 81
Cdd:MTH00205   23 FFSNLLLIGLFFSSFFFSNSFLMTSFISSSFSFDSLSLPLIMLSFWISLLMVLAsykvFKSNKNSKLFTVSVIMLLLILI 102

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  82 MNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFK-- 159
Cdd:MTH00205  103 LSFSVDNLLLFYITFEASLIPTLILILGWGYQPERLQASMYMMMYTLCASLPLLIGLFFLNSLNFSLSMFFNFPLNFSdf 182

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSI 239
Cdd:MTH00205  183 YLFLYWIFLMLAFLVKLPMYFVHLWLPKAHVEAPVSGSMILAGVLLKLGGYGLIRITSMLYKLNSNFSELFFSISLWGGV 262

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 240 ILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLI 319
Cdd:MTH00205  263 MTGMICLRQVDLKSLIAYSSVGHMGLMVVGVFSNTSWGMNGAIIMMVAHGLCSSGMFALANVNYERTNSRSMLMNKGVLN 342

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 320 FMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKN-FFYKSLSSGK 398
Cdd:MTH00205  343 TFPFLVLMWFLLISCNMAAPPSLNLASEILLIMSLLSSSKISGIPLSLISFLSGAYSLYLYSQSQHGKVsSQISSFLAIS 422

                         410       420
                  ....*....|....*....|....*
gi 2294229666 399 LINYLILLFHWIPLNMVILNLSIFI 423
Cdd:MTH00205  423 EREYYILILHWFPLNILILKLKIFI 447
ND4 MTH00014
NADH dehydrogenase subunit 4; Validated
 8-423 5.13e-66

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214399 [Multi-domain]  Cd Length: 452  Bit Score: 217.69  E-value: 5.13e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   8 ISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMS----INQEKNLILCLNLLMLMLIVLVMN 83
Cdd:MTH00014   27 FSTLLLLSLFTLLNLYPMSAPYSMFTESLSSDMLSAPLITLTLWITALMILAsfkiFQNNKAPKTFMTNILILNLILLLT 106

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLL--LESMKFKLN 161
Cdd:MTH00014  107 FSASNLLMFYIFFEASLIPTLFLILGWGYQPERLQASFYLMIYTVTASLPLLMSILLIFYTNNSLSMLMssMEPPSIYLM 186

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSIIL 241
Cdd:MTH00014  187 NLWWLITILAFMVKMPLYTVHLWLPKAHVEAPVAGSMILAGILLKLGGYGLLRMSSLFMHINKSLSAPFSSISLVGAVIT 266

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 242 SLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFM 321
Cdd:MTH00014  267 SLICIRQPDLKSLIAYSSVGHMGLMTAGIMSNTSWGWQGALAMMIAHGLCSSALFALANMTYETTHTRSLFLTKGLLSLF 346

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 322 PSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGK-NFFYKSLSSGKLI 400
Cdd:MTH00014  347 PTMTMWWFLLSAANMAAPPSINLLSEIMLLTSILSSSLSTAILLAITSFLAAAYSLFLYTSTQHGSpPSFMNPLNLFTPR 426

                         410       420
                  ....*....|....*....|...
gi 2294229666 401 NYLILLFHWIPLNMVILNLSIFI 423
Cdd:MTH00014  427 NHTLMTLHLVPLFILILKPDLIT 449
ND4 MTH00044
NADH dehydrogenase subunit 4; Validated
 7-421 6.26e-66

NADH dehydrogenase subunit 4; Validated


Pssm-ID: 214411 [Multi-domain]  Cd Length: 458  Bit Score: 217.54  E-value: 6.26e-66
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   7 FISNMMFLLSFLMLSmNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVF------MSINQEKNLILCLNLLMLMLIVL 80
Cdd:MTH00044   29 SQSSLISLLSLFLLN-NHWSSSWHNLSLSLATDSLSSPLIILSCWLAPLSLlasinhLSNNSPNNQRTFISLIIIILTAL 107

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  81 VMNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLE-----S 155
Cdd:MTH00044  108 IITFSSLELILFYIAFETTLIPTLILITRWGAQKERIQAGLYFLFYTLFGSLPLLISLIAIYSSSSSLSIPLSElnwltS 187

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 156 MKFKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIF-FQNFLEMNKYFIEIG 234
Cdd:MTH00044  188 LSSNSSSIWWIFCILAFLVKMPIYGFHLWLPKAHVEAPVAGSMILAAILLKLGGYGLIRLINLFsLPSANNISFILIVFC 267

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 235 LLGSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIIN 314
Cdd:MTH00044  268 CWGALITSIICLRQTDLKALIAYSSVGHMSLVAAGIFSGTNWGINGALILMIAHGLVSSALFCLANILYERSGTRTLSIT 347

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 315 KGVLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFfyKSL 394
Cdd:MTH00044  348 RGFKLITPLLPLWWLIFCAANLGLPPLPNLIGELLIISSIISWSILSFPIIGLATVFGAIYSLLIYQLTNSGSFP--SWI 425

                         410       420       430
                  ....*....|....*....|....*....|
gi 2294229666 395 SSGKLIN---YLILLFHWIPLNMVILNLSI 421
Cdd:MTH00044  426 SNVSPISsreHLLIFLHLLPLILIIINPNI 455
ND4 MTH00068
NADH dehydrogenase subunit 4; Provisional
 82-380 9.51e-65

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214417 [Multi-domain]  Cd Length: 458  Bit Score: 214.39  E-value: 9.51e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  82 MNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKL- 160
Cdd:MTH00068  108 LAFSATELILFYIFFEATLIPTLIIITRWGNQEERLNAGTYFLFYTLAGSLPLLIALLILQNSLGSLSLILLELMSPMQl 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 ----NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00068  188 mtytNKIWWLACLLAFMVKMPLYGLHLWLPKAHVEAPIAGSMILAAVLLKLGGYGILRISILLTPLSKELSYPFIILALW 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00068  268 GVLMTSLICLRQTDLKSLIAYSSVSHMGLVIAAALIQTPWSFSGAIILMISHGLTSSALFCLANTNYERTHSRTLLLLRG 347

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFF 380
Cdd:MTH00068  348 AQTILPLMATWWLLSNLSNMALPPSPNLWGELTIMVSLFNWSNWTILITGLGTLITAAYTLYMF 411
ND4 MTH00124
NADH dehydrogenase subunit 4; Provisional
 82-418 2.48e-64

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214427 [Multi-domain]  Cd Length: 457  Bit Score: 213.13  E-value: 2.48e-64
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  82 MNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKL- 160
Cdd:MTH00124  108 LAFSATELTLFYIMFEATLIPTLILITRWGNQPERLSAGTYFLFYTLISSLPLLIAILYLHNQTGTLSLPMLQLTHPTLt 187

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 ----NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00124  188 nswtNLLLWLACLMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGIIRITLLLPPLSNTLHYPFLTLALW 267

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00124  268 GALMTSLICLRQTDLKSLIAYSSVSHMGLVIAATMIQTPWSLSGAMILMIAHGLTSSMLFCLANTNYERTHSRTLLLTRG 347

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY-KSLS 395
Cdd:MTH00124  348 LQLLLPLMTTWWLLANLTNMALPPTINLMGELTIMTSLFNWSPTTIILTGLATLITASYTLYMFLSTQRGTLPTHiTTIQ 427

                         330       340
                  ....*....|....*....|...
gi 2294229666 396 SGKLINYLILLFHWIPLNMVILN 418
Cdd:MTH00124  428 PTHTREHLLMTLHIIPLLLLILK 450
ND4 MTH00206
NADH dehydrogenase subunit 4; Provisional
 6-422 7.46e-61

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214458 [Multi-domain]  Cd Length: 450  Bit Score: 204.02  E-value: 7.46e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   6 YFISNMMFLLSFLMLSMNSFfMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSINQ------EKNLILCLNLLMLMLIV 79
Cdd:MTH00206   26 TFFSFLIALLFLLWFKWSSE-VGWSFSNLYLSYDPLSSPLVILSCWLLPLMFLASQNhmknepINRQRIYITLLIVLQLF 104

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  80 LVMNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLL--ESMK 157
Cdd:MTH00206  105 LILFFSSSNLLLFYILFEASLIPTLLLITRWGNQKERLNAGYYFLFYTLIGSLPLLIALLFLQNSLGSLSLYILyfSKLT 184

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 158 FKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLG 237
Cdd:MTH00206  185 TWNNNLWWLACILAFLVKLPLYGVHLWLPKAHVEAPVAGSMVLAGVLLKLGGYGMMRIILILGPSTKLSSYFFIILGLWG 264

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 238 SIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGV 317
Cdd:MTH00206  265 SIMTSSICLRQTDLKSLIAYSSVSHMSLVTAGILSGSPWGFKGALLLMIAHGLVSSALFCLANLLYERSHTRTILGNRGL 344

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 318 LIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY-KSLSS 396
Cdd:MTH00206  345 QMILPLLSFWWLLFFLANLGLPPFPNLFGELLIITSLFSWSNFTLPLLGLGFLFTAIYSLYMFVMTQHGKTPNHlLSLSP 424

                         410       420
                  ....*....|....*....|....*.
gi 2294229666 397 GKLINYLILLFHWIPLNMVILNLSIF 422
Cdd:MTH00206  425 SSTREHLLLFLHLFPVILLILNPNLI 450
ND4 MTH00110
NADH dehydrogenase subunit 4; Provisional
 13-387 2.22e-58

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177172 [Multi-domain]  Cd Length: 459  Bit Score: 197.81  E-value: 2.22e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  13 FLLSFLMLSMNSFFME-WINLSLNFGLNFYSYGIIMMSLWIFGLVFM---------SINQEKNLILCLNLLMLMLIvlvM 82
Cdd:MTH00110   32 LLISLISLLLLNQPNDnSLNFSLLFFSDSLSTPLLILTTWLLPLMLMasqhhlskePLTRKKLYITMLILLQLFLI---M 108

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  83 NFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKL-- 160
Cdd:MTH00110  109 TFTATELIMFYILFEATLIPTLIIITRWGNQTERLNAGLYFLFYTLVGSLPLLVALLYIQNNLGSLNFLLLQLWAQPLpn 188

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 ---NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLG 237
Cdd:MTH00110  189 swsNNLLWLACMMAFMVKMPLYGLHLWLPKAHVEAPIAGSMVLAAILLKLGGYGMMRITIILNPLTEFMAYPFLMLSLWG 268

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 238 SIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGV 317
Cdd:MTH00110  269 MIMTSSICLRQTDLKSLIAYSSVSHMALVIVAILIQTPWSFMGATALMIAHGLTSSMLFCLANSNYERIHSRTMILARGL 348

                         330       340       350       360       370       380       390
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 318 LIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGK 387
Cdd:MTH00110  349 QTLLPLMATWWLLASLTNLALPPTINLIGELFVIMSSFSWSNITIILMGLNMLITALYSLYMLITTQRGK 418
ND4 MTH00127
NADH dehydrogenase subunit 4; Provisional
 82-380 3.84e-54

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177186 [Multi-domain]  Cd Length: 459  Bit Score: 186.70  E-value: 3.84e-54
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  82 MNFFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKL- 160
Cdd:MTH00127  109 LAFGATEIIMFYVMFEATLIPTLIIITRWGNQTERLNAGTYFLFYTLAGSLPLLVALLLLQNSTGTLSMLTLQYSQPLQl 188

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 ----NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLL 236
Cdd:MTH00127  189 sswaDKLWWAGCLLAFLVKMPLYGVHLWLPKAHVEAPIAGSMVLAAVLLKLGGYGMMRMMVMLDPLTKELSYPFIILALW 268

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:MTH00127  269 GIIMTGSICLRQTDLKSLIAYSSVSHMGLVAGGILIQTPWGFTGALILMIAHGLTSSALFCLANTNYERTHSRTMLLARG 348

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFF 380
Cdd:MTH00127  349 LQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMF 412
ND4 MTH00204
NADH dehydrogenase subunit 4; Provisional
 84-391 1.62e-41

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 164750 [Multi-domain]  Cd Length: 485  Bit Score: 153.30  E-value: 1.62e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLN-- 161
Cdd:MTH00204  129 FSVLDLLLFYILFEGILIPMFLLIGIWGSREEKVRASYYFFFYTFAGSVFMLLGIFQLYSITGTTDYQILLNIKLPLSiq 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLE-MNKYFIEIGLLGSII 240
Cdd:MTH00204  209 KWLLVGFFLSLAVKIPQIPFHIWLPQAHVEAPVAGSVILAGILLKLGGYGFLRFSWPLFPAASEyFAPLIVMLSVIAVIY 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 241 LSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIF 320
Cdd:MTH00204  289 GSLTTCRQVDFKRLIAYSSVAHMGLVPLGLFTHTIEGLVAAVFLMLAHGFVSSALFIAVTFLYERHHTRLIKYYRGLTLT 368

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2294229666 321 MPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFY 391
Cdd:MTH00204  369 MPLFVIIMLVLSLANMGFPLSCNFVGEFFSLLAAFEYSLGLGVLVTSGMVWSAAYSLYLYNRISFGGGSNY 439
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 84-387 2.52e-41

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 152.54  E-value: 2.52e-41
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLN-- 161
Cdd:COG1008   128 FLALDLFLFYVFWELMLIPMYFLIGIWG-GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALTFDIAELAAAPLPlt 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 --KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNFLEMNKYFIEIGLLGS 238
Cdd:COG1008   207 aqLLLFLAFFIAFAVKVPMFPFHTWLPDAHVEAPTAGSVLLAGVLLKMGGYGLLRFALpLFPEASAYFAPLLAALGVIGI 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 239 IILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVL 318
Cdd:COG1008   287 IYGALVALAQTDLKRLIAYSSVSHMGFVLLGIFALNPLGLQGAVLQMVSHGLITAALFLLVGVLYDRTHTRDIADLGGLA 366

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2294229666 319 IFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGK 387
Cdd:COG1008   367 KRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGP 435
ND4 MTH00094
NADH dehydrogenase subunit 4; Provisional
 5-407 2.18e-39

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 177157 [Multi-domain]  Cd Length: 403  Bit Score: 145.82  E-value: 2.18e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666   5 LYFISNMMFLLSFLMLSMNSFFMEWINLSLNFGLNFYSYGIIMMSLWIFGLVFMSinqeKNLILCLNLLMLMLIVLVMNF 84
Cdd:MTH00094    4 LFFFSPFLFFLFLMFFSFLMFNNYSWSGLFFFFDSFVFVLLIFMMVFILGLVLLS----EKNFNLLILSNLLILICLLFF 79

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  85 FSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYlfnlmgSLSFLLLESMKFKLNKIL 164
Cdd:MTH00094   80 VSSNMLMLYMFFELSMFPILIMILGYGSQIEKINSSYYLLFYAAFFSFPFLFVYLK------NFFFFSLCYFDFFLSWEM 153

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 165 FLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMmiFFQNFLEMNkYFIEIGLLGSIILSLS 244
Cdd:MTH00094  154 FFILSLSFMMKFPVYFLHLWLPKAHVEAPTTASMLLAGLLLKLGTAGFLRIL--GSLNFVYNN-FWIIFSLLGMILSSFC 230

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 245 CFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPSM 324
Cdd:MTH00094  231 CVFQSDSKSLAAYSSVTHMSFLLLSLVYMSMSGKLSGLMMMLAHGYTSTLMFYLIGEFYHISKSRLIYFMNSFFSSSMFF 310

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 325 SLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHGKNFFYKSLSSGKLINYLI 404
Cdd:MTH00094  311 GLIFSLVFLSNSGVPPSLSFFSEFLIISNSFMKNKFSFFFIFFYFLVSFYYSLFLIVSSFMGKKFSNFNNFNVGLSLPLV 390


                  ...
gi 2294229666 405 LLF 407
Cdd:MTH00094  391 FMM 393
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 84-355 2.34e-38

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 144.57  E-value: 2.34e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPL----LLVLFYLFNLMGSLSFLLLESMKFK 159
Cdd:PRK05846  128 FAALDLLLFYVFFEAMLIPMYFLIGVWG-GKNRIYAATKFFLYTLLGSLLMlvaiIYLVVVYYNATGTFDIADLLNLPLP 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LN--KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEI-GLL 236
Cdd:PRK05846  207 PGvqYWLFLAFFIAFAVKMPMFPLHTWLPDAHVQAPTAGSVLLAGILLKMGAYGLLRFSLPLFPDASHEFAPIIITlGVI 286

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 237 GSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKG 316
Cdd:PRK05846  287 AIIYGALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNQLGIQGAIFQMISHGLSSAALFLLVGVLYDRLHTRDIADYGG 366

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2294229666 317 VLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLV 355
Cdd:PRK05846  367 LAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSF 405
ND4 MTH00217
NADH dehydrogenase subunit 4; Provisional
 84-386 2.77e-38

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214462 [Multi-domain]  Cd Length: 482  Bit Score: 144.42  E-value: 2.77e-38
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKF--KLN 161
Cdd:MTH00217  126 FTILDLVGFYILFEGILIPMFLIIGIWGSREEKVQASYYFFFYTFIGSVFMLLGIFTLYSYAGTTDYQALCCLKIekELQ 205

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIE-IGLLGSII 240
Cdd:MTH00217  206 YFIFLGFFLSLAIKIPKIPFHIWLPQAHVEAPVAGSVILAGVLLKLGGYGFIRFSWPLLPEASEYFSPLIQtLSLLAIIY 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 241 LSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIF 320
Cdd:MTH00217  286 GSLTTCRQVDLKRIIAYSSVAHMGLVTLGIFSHTIQGLVAAIFLMLAHGLVSSALFIAVTFLYERHHTRLIKYYRGMVIT 365

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2294229666 321 MPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHG 386
Cdd:MTH00217  366 MPLFGILMLLLVLANASIPLSCNFVGEFLSLLAAFEYSYIVGVLASLGMVLSAGYSIYLYNRVCFG 431
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 84-386 2.34e-37

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 141.98  E-value: 2.34e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKF----K 159
Cdd:MTH00226  148 FSVLDIFMFYILFEGVLIPMYLILGIWGSREEKMQAAYYFFFYTLIGSVLMLLCLFSLYNIHGTTDYLTLASCSHvvseQ 227

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNFLEMNKYFIEIGLLGS 238
Cdd:MTH00226  228 TQKWIFLGIFLAMAVKIPIFPFHIWLPKAHVEAPVAGSVLLAGILLKLGGYGLVRLSWpILPLGAQNLAPAVIAMGIVGI 307

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 239 IILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVL 318
Cdd:MTH00226  308 VYGSFATCRQIDVKRLVAYSSVAHMGLVSITLVTHDIIGLTGSIFIMLAHGIVSSLLFILVTILYDRHHTRLIKYYRGLS 387

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2294229666 319 IFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYCLVSFMYSLYFFSFIVHG 386
Cdd:MTH00226  388 ITMPIWGTIMIVTSLANVAVPPSGNFIGEYLSILSSFNWNPIIGVFVCSGVILSAVYSFYFANRVTFG 455
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 24-352 3.84e-35

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 135.45  E-value: 3.84e-35
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  24 SFFMEWI---NLSLNFGLNFYSYGIIMMSLWIFGLVFMSI--NQEKNLILCLNLLMLMLIVLVMNFFSMNMLMFYFFFEV 98
Cdd:TIGR01972  58 TEDIPWIpalGISYHLGVDGISLLLVLLTALLTLLAILASweSIQKRVKEFYALLLLLEAGVIGVFLALDLFLFYVFWEA 137

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  99 SLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMG---SLSFLLLESMKFKLNKILFLYLIMGFLVK 175
Cdd:TIGR01972 138 MLIPMYLLIGVWG-GPNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGgtfDLLELLNLPLPFGVQTWLFLAFFIAFAVK 216

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 176 MPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNFLEMNKYFIEIGLLGSIILSLSCFRQIDMKIL 254
Cdd:TIGR01972 217 VPLFPLHTWLPDAHVEAPTAGSVILAGVLLKMGTYGFLRFNLpLFPDASLYFAPVLAALGVIAIIYGALIALAQTDIKRL 296

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 255 VAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPSMSLMWFLMCSS 334
Cdd:TIGR01972 297 IAYSSISHMGFVLLGIFSFNELGISGAVFQMISHGLITAALFLLVGVLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMA 376

                         330
                  ....*....|....*...
gi 2294229666 335 NMAAPFSLNLVGEIFLLM 352
Cdd:TIGR01972 377 SLGLPGTSGFVGEFLILL 394
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 86-363 1.89e-32

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 124.35  E-value: 1.89e-32
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  86 SMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFK-----L 160
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIGYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELSKALTGglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 161 NKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSII 240
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTPVSALLAATLVKAGGYGLIRRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 241 LSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYL-LNLCYLETHSRLMIINKGVLI 319
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGTIYGIQAAIFHLLTHGLFSAGLFLCaGSVIYRRVHTRNIRDYGGLAK 240

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2294229666 320 FMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMI 363
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLV 284
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
84-348 3.87e-26

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 110.17  E-value: 3.87e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSF----LLLESMKFK 159
Cdd:PRK06473  124 FLAQDLLLFFLFYELELIPLYLLIAIWG-GQRRGYAATKFLLYTAISGILILVSFLGLVWLSGASSFdyepLRSHTLPLS 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRL-MMIFFQNFLEMNKYFIEIGLLGS 238
Cdd:PRK06473  203 TQLLLLAPILVGFGIKIPLVPFHTWLPDAHVEASTPVSVLLAGVLLKLGTYGLLRFgVGLFPEAWVYLAPWLATWAVVSV 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 239 IILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVL 318
Cdd:PRK06473  283 LYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAATPLSILAAVFQMISHGLISALLFLLVGVVYKKTGSRDVDVLRGLL 362

                         250       260       270
                  ....*....|....*....|....*....|
gi 2294229666 319 IFMPSMSLMWFLMCSSNMAAPFSLNLVGEI 348
Cdd:PRK06473  363 NPERGLPITGSLMILGVMASAGIPGMVGFI 392
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 84-316 6.23e-23

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 100.88  E-value: 6.23e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSF----LLLESMKFK 159
Cdd:PRK12561  104 FLAQDLLLFFLMWELELVPVYLLISIWG-GQKRLYAATKFILYTALASIFILVAGLALALSGDTFTFdlaeLGAKSYPLA 182

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMiffQNFLEMNKYF----IEIGL 235
Cdd:PRK12561  183 LELLLYAGFLIAFGVKLPIFPLHTWLPDAHGEASAPVSMILAGVLLKMGGYALIRFNV---QMLPDAHVYFapalAILGV 259

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 236 LGSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSrLMIINK 315
Cdd:PRK12561  260 VNIIYGALNAFAQDNVKRRLAYSSVSHMGFVLLGIAAFTDLGISGAMLQMISHGLIAAALFFLTGVTYERTHT-LSIPNM 338


                  .
gi 2294229666 316 G 316
Cdd:PRK12561  339 G 339
PRK02546 PRK02546
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 84-348 2.60e-22

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 235050 [Multi-domain]  Cd Length: 525  Bit Score: 99.01  E-value: 2.60e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLL--LESMKFKLN 161
Cdd:PRK02546  132 FAVQDMLLFFLAWELELIPVYLLLAIWG-GKKRQYAATKFILYTAGSSLFILLAALAMAFYGDTPTFDMtaLAAKDFGLG 210

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLY--LIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMiffQNFLEMNKYF----IEIGL 235
Cdd:PRK02546  211 FQLLCYagLLIAYGVKLPIVPLHTWLPDAHGEATAPVHMLLAGILLKMGGYALLRMNA---GMLPDAHAQFapllIVLGV 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 236 LGSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINK 315
Cdd:PRK02546  288 VNIIYAALTSFAQRNLKRKIAYSSISHMGFVLIGIGSFTDLGTSGAMLQMISHGLIGASLFFLVGATYDRTHTLMLDEMG 367

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2294229666 316 GVLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEI 348
Cdd:PRK02546  368 GVGQKMRKMFAMWTACSLASLALPGMSGFVAEL 400
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
84-299 2.05e-20

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 93.24  E-value: 2.05e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSF----LLLESMKFK 159
Cdd:PRK07363  124 LLAQNLLLFFLFYELELIPFYLLIAIWG-GEKRGYASIKFLIYTAVSGLLVLAAFLGIVWLSGSTSFdydaISTQNLSLN 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRL-MMIFFQNFLEMNKYFIEIGLLGS 238
Cdd:PRK07363  203 TQLILLTGLLLGFGIKIPLVPLHTWLPDAYTEASPAVAILLGGVLAKLGTYGLLRFgLQLFPQTWSLVAPGLAIIGTISV 282

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2294229666 239 IILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLL 299
Cdd:PRK07363  283 IYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGTQLSLLGAVAQMISHGLILALLFHLV 343
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 84-383 3.33e-17

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 82.89  E-value: 3.33e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMkWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSF----LLLESMKFK 159
Cdd:COG0651   124 FLTGDLFNLFVFFEVMLLASYGLVA-LGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMadlaARLAELDPG 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFF--QNFLEMNKYFIEIGLLG 237
Cdd:COG0651   203 LLLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTKVGVYAILRVLTLLFgaDPALFLGTLLLVLGLLT 282

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 238 SIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGV 317
Cdd:COG0651   283 MLVGALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLGLAGALFHLLNHALAKALLFLAAGAIERATGTRDLDKLGGL 362

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2294229666 318 LIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVN-WMSLLMIKLFFYCLVSFMYSLYFFSFI 383
Cdd:COG0651   363 GKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEaGAWLLAAVLLLSSLLTLAYFVRIFGRA 429
ndhD CHL00011
NADH dehydrogenase subunit 4
 84-327 2.94e-14

NADH dehydrogenase subunit 4


Pssm-ID: 176954 [Multi-domain]  Cd Length: 498  Bit Score: 74.21  E-value: 2.94e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGmGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFK---- 159
Cdd:CHL00011  129 FSSRDLLLFFIMWELELIPVYLLLSMWG-GKKRLYSATKFILYTAGGSIFLLIGVLGMGLYGSNEPTLNFETLANQsypv 207

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 160 -LNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEM-NKYFIEIGLLG 237
Cdd:CHL00011  208 aLEILFYIGFLIAYAVKLPIIPLHTWLPDTHGEAHYSTCMLLAGILLKMGAYGLIRINMELLPHAHSIfSPWLVIVGAIQ 287

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 238 SIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGV 317
Cdd:CHL00011  288 IIYAASTSLGQRNLKKRIAYSSVSHMGFIIIGIGSITDTGLNGAILQIISHGFIGAALFFLAGTSYDRIRLVYLDEMGGI 367

                         250
                  ....*....|
gi 2294229666 318 LIFMPSMSLM 327
Cdd:CHL00011  368 AIPMPKIFTM 377
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 165-377 1.04e-09

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 60.15  E-value: 1.04e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 165 FLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQN--FLEMNKYFIEIGLLGSIILS 242
Cdd:PRK08676  209 FLFIFIGFLAKSGLVPFHTWLPAAYAKAPSVVSALLSGTVLNIGIYGILRLSALLRQSgaAEQFSNVLIGLGIFSIAVAA 288

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 243 LSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMP 322
Cdd:PRK08676  289 FSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLVKSGLFFSAGILHRQYRSDRFDRIFDVFRLQP 368

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2294229666 323 SMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVN---WMSLLMIKLFFYCLVSFMYSL 377
Cdd:PRK08676  369 VAAWGVILGSAAIIGMPPFPLFLSKFFILLQLGGisvWLVLAVLLLLLLAASSFAIFL 426
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 162-297 6.37e-09

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 57.63  E-value: 6.37e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEM--NKYFIEIGLLGSI 239
Cdd:PRK06458  214 KLAFVFLLIGFGTKVGLFPMHAWLPDAHSEAPSPVSALLSGVLLNVALYAVLRYYILIDAAIGSDfpGRLLLIFGLLSVL 293

                          90       100       110       120       130
                  ....*....|....*....|....*....|....*....|....*....|....*....
gi 2294229666 240 ILSLSCFRQIDMKILVAMSSVVHMNlLMASMFTM-SKLSFLGSYLMMIAHGLCSSGLFY 297
Cdd:PRK06458  294 VAAFFLLRQRDIKRLFAYSSIEHMG-LIAFALGIgGPLGIFAALLHMLNHSLTKSAIFF 351
PRK08667 PRK08667
hydrogenase membrane subunit; Validated
 86-373 1.53e-08

hydrogenase membrane subunit; Validated


Pssm-ID: 236331 [Multi-domain]  Cd Length: 644  Bit Score: 56.66  E-value: 1.53e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  86 SMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLNkILF 165
Cdd:PRK08667  130 SANTFSFLFFWEIMALSSFFLVMNDYQEEETQRAGIFYFVMTQLSTVFLMLGIIVLFIQTGSFELSPLGASAGILS-LVF 208

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 166 LYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSIILSLSC 245
Cdd:PRK08667  209 LLLFLGFGIKAGIIPFHKWLPYAHPASPSNVSALMSGVMLKVAVYGLVRFLMDVLSPELWWGVLILLAGSISALLGVIYA 288

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 246 FRQIDMKILVAMSSVVHMNLLMASMF-----------TMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIIN 314
Cdd:PRK08667  289 LKEHDLKGLLAYSSIENIGIILMGIGlyvifgvygldTLALLALGGALFHSLNHALFKSLLFLTAGSVVHATGTRNIEKM 368

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2294229666 315 KGVLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLL--MIKLF-FYCLVSF 373
Cdd:PRK08667  369 GGLVKLMPYTSALFLVGAVSIAALPPFNGFASELLLYESFFQSFSVAdpLIKILlFSVLAIF 430
PRK12667 PRK12667
putative monovalent cation/H+ antiporter subunit D; Reviewed
 172-328 1.97e-07

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 237167 [Multi-domain]  Cd Length: 520  Bit Score: 53.05  E-value: 1.97e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 172 FLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKY-------FIEIGLLGSIILSLS 244
Cdd:PRK12667  233 FTIKAAIFPNHFWLPDAHPAAPSPVSAMLSGLVVNVGAYAIIRFLYTIFGISPSLIDFraalspiLIILGAVSAIIGALM 312

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 245 CFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPSM 324
Cdd:PRK12667  313 MVVQKDVKRLLAYSTISHMGYIFMGIGIGTQLGLAAALFHIINHAIAKSLLFLASGVFIHAAGTRDIDELAGLGRKMPIA 392


                  ....
gi 2294229666 325 SLMW 328
Cdd:PRK12667  393 SFAF 396
ND4 MTH00062
NADH dehydrogenase subunit 4; Provisional
 84-367 2.01e-06

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214413 [Multi-domain]  Cd Length: 417  Bit Score: 49.54  E-value: 2.01e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  84 FFSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLNkI 163
Cdd:MTH00062   88 FCVNNSLLFWFFYELSIIPLLYLLFSESPYSERYLASWYFLGYLLLTSLPLLLCLLYLSLVNGSFNFSDWGSDDSVSL-I 166

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 164 LFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLemnKYFIEIGLLGSIILSL 243
Cdd:MTH00062  167 VYYVLSFMFITKVPLFPFHTWLPIVHAEASSPVSIFLSGYIMKLGLLGVYRFCGFIFSGSF---LGYLFLCCLFSVFFLI 243

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 244 SCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLIFMPS 323
Cdd:MTH00062  244 TACSELDGKRWLAFLSLSHILVPVLGLFVGDWSSINLSFFYCLGHGLSAGLVFLLLWCFYEVSGSRNWVLLKSGINGSLV 323

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|....
gi 2294229666 324 MSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFF 367
Cdd:MTH00062  324 LRVIVVFSFLSLCSFPPTIQFFCEVFLVSSSFGVLVYLLFWCFY 367
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 85-356 8.52e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 47.89  E-value: 8.52e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  85 FSMNMLMFYFFFEVSLLIIFFFIMKWGMGFLRIYASYYLMFYTLFFSLPLLLVLFYLFNLMGSLSFLLLESMKFKLNKIL 164
Cdd:PRK06589  134 LSSDLFTMFVCYELLTISTAFLIGHTRNNISLSGGYKYLKILMISALLLFLPAVILIYTKTGNLDFVSGGLFSKNQSIIL 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 165 FLYLIMGfLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFF-----QNFLEMNKYFIEIGLLGSI 239
Cdd:PRK06589  214 LLMFIYG-IAKTAIFPVHSWLPAAMVAHYPVSALLHAVIVVKTGLFCIYKILLYIFglsylQRIFAEFNWLIFIPIVSIF 292

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 240 ILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLI 319
Cdd:PRK06589  293 YSSLKALKTDNIKKILAYSTISQLSLALLSAFILTPKALGAAILHLVSHSFAKICLFYSMGSIYSLKKEDQVDKLHGTSK 372

                         250       260       270
                  ....*....|....*....|....*....|....*..
gi 2294229666 320 FMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVN 356
Cdd:PRK06589  373 SFPLISFIISISSLSLIGIPIFSGFISKFLILLAASE 409
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 24-296 2.34e-05

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 46.53  E-value: 2.34e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666  24 SFFMEWINLSLNFGLNFYS--YGIIMMSLWIFGLVFMSINQEKNLILCLNLLMLMLIVLVMNFFSMNMLMFYFFFEVSLL 101
Cdd:PRK08668   53 KLTLFFGGFKLTFTLTHLSwfFAMISLLVIFSVAFFMVSEKTKNDAYFNMFALMSLAGVLGVFLANDLLTLYIFWEIMTF 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 102 IIFFFIMkWGMGFLRIYASYYLMF-----YTLFFSLPLLLVLFYLFNLMGSLSFLLLESmKFKLNKILFLYLIMGFLVKM 176
Cdd:PRK08668  133 SSFMMVP-MGKKESRKASLKYFVLsaigaYAMLYAIFLIYAKTGTFDFADISQGLINDT-STGFALIVFLFLLAFGVAKA 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 177 PMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIF-----------FQNFLEMNKYFIEIGLLGSIILSLSC 245
Cdd:PRK08668  211 GIFPLHVWAPDAYSEAPQSFSAVLSGQLSKLGAYGFLLVLYVLpgtklfsefgtYRGVPLFNYILAWLGNISIIVGTLMA 290

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2294229666 246 FRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLF 296
Cdd:PRK08668  291 ILQEDIKKLIAYSSVANGGYILVGLGLGTSLGFAGGLFHVFNHALFKGLFF 341
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 165-309 2.81e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 46.03  E-value: 2.81e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 165 FLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFF-------QNFLEMNKYFIEIGLLG 237
Cdd:PRK08375  205 FGFVLLALALKAAVFPLHTWLPRAYPAAPPVVTALLSGLVTKVAVYALIRIYFTVFggdfrfaLGLGWLLAVLALLSMLV 284

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2294229666 238 SIILSLScfrQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSR 309
Cdd:PRK08375  285 GSLAALG---QDDVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLLHHALMKGALFLAAGAIEVTYGTR 353
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 145-375 4.00e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 45.88  E-value: 4.00e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 145 MGSLSFLLLESMKFKLNKILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMM-IFFQNF 223
Cdd:PRK12662  192 MGDMFLIIQDLPTNRAIQIGVLFIMVGLFIKAALFPFHKWLIQAYSEAPSFISVFFSGTSTKVMIYLIIRIVYdVFKANF 271

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 224 ----LEMNKYFIEIGLLGSIILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLL 299
Cdd:PRK12662  272 vfttLPFNNVFMILAALAIVFGSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYIVNHSIVKSALFMVS 351

                         170       180       190       200       210       220       230
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2294229666 300 NLCYLETHSRLMIINKGVLIFMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVN---WMSLLMIKLFFYCLVSFMY 375
Cdd:PRK12662  352 GSISYHFGTTKLEDCLNLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDAFIKsnaWIGLVVLLVGSGLSVIYVW 430
PRK08377 PRK08377
NADH dehydrogenase subunit N; Validated
 162-383 1.18e-04

NADH dehydrogenase subunit N; Validated


Pssm-ID: 181406 [Multi-domain]  Cd Length: 494  Bit Score: 44.37  E-value: 1.18e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 162 KILFLYLIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFF--QNFLEMNKYFIEIGLLGSI 239
Cdd:PRK08377  206 QVGLALLIFGLAVEAELFPLNAWAPDAYQAAPHPITVMFSAFVVKAGLYAMARILYLMQnaNGWSSVLKLVIIMATLTVF 285

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 240 ILSLSCFRQIDMKILVAMSSVVHMNLLMASMFTMSKLSFLGSYLMMIAHGLCSSGLFYLLNLCYLETHSRLMIINKGVLI 319
Cdd:PRK08377  286 FAELSALRQKNVKRMIAYSSIGQVGMIALALALGTQAGVDAGVFHMINHAIVKALLFLAVGYVGITLGGTEIEKFEGLGK 365

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2294229666 320 FMPSMSLMWFLMCSSNMAAPFSLNLVGEIFLLMSLVNWMSLLMIKLFFYclVSFMYSLYFFSFI 383
Cdd:PRK08377  366 RMPLTALALTIGALSTVGIPLFNVFWSKFRIILAGLSAGYTWPVALVLG--ASVVEAVYYFRLI 427
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 168-362 1.20e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 41.09  E-value: 1.20e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 168 LIMGFLVKMPMYMIHGWLLKAHVEAPVFGSMILAAILLKLGSYGLLRLMMIFFQNFLEMNKYFIEIGLLGSIIlslsCFR 247
Cdd:PRK07234  190 IALGLLVKGGIFVSGLWLPLTHSEAEPPVSALLSGVVVKAGVFPLVRCALDVPGLDLIVRIFGVGTALLGVLF----ALL 265

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2294229666 248 QIDMKILVAMSSVVHMNLLMASMFTmsklsflgSYLMMIAHGLCSSGLFYLLNLCYLETHSRL----MIINKGVLIFMPS 323
Cdd:PRK07234  266 EKDLKRMLAFSTISQLGFILAAPLV--------GGLYALAHGLVKSTLFLCAGALPSRNFTELisqmLGIGKWIPLTMAS 337

                         170       180       190
                  ....*....|....*....|....*....|....*....
gi 2294229666 324 MSLMWFlmcssnmaaPFSLNLVGEIFLLMSLVNWMSLLM 362
Cdd:PRK07234  338 FSIAGF---------PLLAGFVSKVLTLKNLLPWQAIAL 367
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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