|
Name |
Accession |
Description |
Interval |
E-value |
| ndhF |
CHL00025 |
NADH dehydrogenase subunit 5 |
1-360 |
0e+00 |
|
NADH dehydrogenase subunit 5
Pssm-ID: 214338 [Multi-domain] Cd Length: 741 Bit Score: 665.44 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEAVVGYSPEKSQNMVLM 80
Cdd:CHL00025 305 GATLALAQKDIKRGLAYSTMSQLGYMMLALGIGSYRAALFHLITHAYSKALLFLGSGSVIHSMEPIVGYSPDKSQNMVLM 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIHFQK 160
Cdd:CHL00025 385 GGLRKYMPITKTTFLLGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLRVHFQN 464
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 161 YSGKKSSSFYSIKLWGKEEQKMINRNfrlFPLLTMNKNE-------KPYTIGGNVKK--RAFITNFGYKKAFSYPHESDN 231
Cdd:CHL00025 465 YSGKKNSSFYSISLWGKEESKKINKL---LLLLTMNNNErvsffskKTYKIDGNVRNmiRSFITIFGNKKTFSYPHESDN 541
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 232 TMLFPMLILVLFTLFVGAIAIPLNQEEMHLDILSKLLTPSINLLHKNSNDFEDSYQFLTNATFSVSIAGFGIFTAFLLYK 311
Cdd:CHL00025 542 TMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHQNSNNSVDWYEFLTNAIFSVSIAFFGIFIASFLYG 621
|
330 340 350 360
....*....|....*....|....*....|....*....|....*....
gi 2314329695 312 PFYSSLLNLNLLNSFSKKGPKRIFLDKIIYLIYDWSYNRGYIDTFYSIS 360
Cdd:CHL00025 622 PVYSSLQNLDLINSFVKGGPKRIFLDKIINVIYNWSYNRGYIDAFYTIS 670
|
|
| Proton_antipo_C |
pfam01010 |
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a ... |
144-360 |
2.60e-117 |
|
NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus; This sub-family represents a carboxyl terminal extension of pfam00361. It includes subunit 5 from chloroplasts, and bacterial subunit L. This sub-family is part of complex I which catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane. This family is largely a few TM regions of the F subunit of NADH-Ubiquinone oxidoreductase from plants. The TMs form part of the anti-porter subunit.
Pssm-ID: 366417 [Multi-domain] Cd Length: 244 Bit Score: 339.59 E-value: 2.60e-117
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 144 RIYLLTFEGHLNIHFQKYSGKKSSSFYSIKLWGKEEQKMINRNFRLFPLLTMNKNE-------KPYTIGGNVKKRAF--- 213
Cdd:pfam01010 1 RIYLLTFEGHLNVHFQNYSGKKNSSFYSISLWGKEGSKLINKNFRTLLLLTMNNNEkvsffskKTYRIDGNVRNMTRpfi 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 214 -ITNFGYKKAFSYPHESDNTMLFPMLILVLFTLFVGAIAIPLNQEEMHLDILSKLLTPSINLLHKNSNDFEDSYQFLTNA 292
Cdd:pfam01010 81 tITHFDNKKTFSYPHESDNTMLFPLLVLVLFTLFVGFIGIPFNQEGIDLDILSKWLTPSINLLHKNSNNSVDWYEFVTNA 160
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2314329695 293 TFSVSIAGFGIFTAFLLYKPFYSSLLNLNLLNSFSKKGPKRIFLDKIIYLIYDWSYNRGYIDTFYSIS 360
Cdd:pfam01010 161 IFSVSIAYFGIFIASFLYKPVYSSFQNLDLINSFVKKGPKRIFLDKIINVIYNWSYNRGYIDVFYTTS 228
|
|
| PRK07376 |
PRK07376 |
NADH-quinone oxidoreductase subunit L; |
1-310 |
1.50e-82 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236005 [Multi-domain] Cd Length: 673 Bit Score: 264.19 E-value: 1.50e-82
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEAVVGYSPEKSQNMVLM 80
Cdd:PRK07376 305 GASIALTQNDIKKGLAYSTISQLGYMVMAMGCGAYSAGLFHLMTHAYFKAMLFLGSGSVIHGMEEVVGHDPVLAQDMRLM 384
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGhlnihfqK 160
Cdd:PRK07376 385 GGLRKYMPITAITFLIGCLAISGIPPFAGFWSKDEILGAAFEANPALWFVGFLTAGMTAFYMFRMYFLTFEG-------E 457
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 161 YSGkksssfysiklwgkEEQKMINRnfrlfpLLTMNKNEKPYTIGGNVKKRafitnfGYKKAFSyPHESDNTMLFPMLIL 240
Cdd:PRK07376 458 FRG--------------NDKELQKE------LLAAADAPGHHEGHHEEHGE------HHHHSGS-PHESPWTMTLPLVVL 510
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 241 VLFTLFVGAIAIPLNQEEMHLdilskLLTPSINLLHKNSNDFEdsyQFLTNATFSVSIAGFGIFTAFLLY 310
Cdd:PRK07376 511 AVPSVLIGLLGTPWNNRFEAF-----LHAPGEALEAAAHFEWG---EFLILAGASVGIALIGITLASLMY 572
|
|
| NuoL |
COG1009 |
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ... |
1-357 |
9.34e-66 |
|
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440633 [Multi-domain] Cd Length: 608 Bit Score: 218.48 E-value: 9.34e-66
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEavvgyspekSQNMVLM 80
Cdd:COG1009 289 AALIALAQTDIKRVLAYSTVSQLGYMFLALGVGAYVAALFHLLTHAFFKALLFLGAGSVIHATG---------TRDIRKM 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSW---LYSPIFAIIAWSTAGLTAFYMFRIYLLTFeghlnih 157
Cdd:COG1009 360 GGLRKKMPITAITFLIGALSLAGIPPFAGFFSKEAILEAALeagGLGPLLLAVALLGAFLTAFYSFRLFFLVF------- 432
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 158 fqkysgkksssfysiklWGKEEQKMINRnfrlfplltmnknekpytiggnvkkrafitnfgykkafsyPHESDNTMLFPM 237
Cdd:COG1009 433 -----------------FGKPRPKTPKH----------------------------------------PHESPWLMTLPL 455
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 238 LILVLFTLFVGAIAIPLNQeemhlDILSK--LLTPSINLLHKnsndfedsyQFLTNATFSVSIAGFGIftAFLLYkpfys 315
Cdd:COG1009 456 VVLAVLSLVLGLLLPGLLE-----GLLAPaaVLGGELHLAHG---------LLLNALPLLLSLLGIAL--GYLLY----- 514
|
330 340 350 360
....*....|....*....|....*....|....*....|..
gi 2314329695 316 sllnlnllnsfsKKGPKRIFLDKiIYLIYDWSYNRGYIDTFY 357
Cdd:COG1009 515 ------------LKRPLPALAER-LKPLYRLLANKWYFDELY 543
|
|
| PRK06590 |
PRK06590 |
NADH:ubiquinone oxidoreductase subunit L; Reviewed |
1-357 |
4.41e-63 |
|
NADH:ubiquinone oxidoreductase subunit L; Reviewed
Pssm-ID: 235836 [Multi-domain] Cd Length: 624 Bit Score: 211.94 E-value: 4.41e-63
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLM 80
Cdd:PRK06590 295 AAFIGLVQTDIKRVLAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAM--------HHEQDIRKM 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFA-IIAWSTAGLTAFYMFRIYLLTFeghlnihfq 159
Cdd:PRK06590 367 GGLRKKMPVTYATFLIGTLALIGIPPFAGFFSKDEILEAAFANGHINLfVAGLVGAFLTAFYSFRLIFLVF--------- 437
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 160 kysgkksssfysiklWGKEEQKMINrnfrlfplltmnknekpytiggnvkkrafitnfgykkafsyPHESDNTMLFPMLI 239
Cdd:PRK06590 438 ---------------HGKEKEKIHH-----------------------------------------PHESPAVMTLPLIV 461
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 240 LVLFTLFVGAIAIP-----LNQEEMHLDILSKLLTPSINLLhknsndfedsyqfltnATFSVSIAGFGIftAFLLYKpfy 314
Cdd:PRK06590 462 LAVLSVFAGALIVPpflgvLPLTTELAHGEAEHHLPVWVAL----------------LPLVVALAGIAL--AWLLYL--- 520
|
330 340 350 360
....*....|....*....|....*....|....*....|...
gi 2314329695 315 ssllnlnllnsFSKKGPKRIflDKIIYLIYDWSYNRGYIDTFY 357
Cdd:PRK06590 521 -----------KKPTLPTSI--AAPGRFLYTLLRNKYYFDELY 550
|
|
| NDH_I_L |
TIGR01974 |
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th ... |
1-357 |
5.67e-53 |
|
proton-translocating NADH-quinone oxidoreductase, chain L; This model describes the 12th (based on E. coli) structural gene, L, of bacterial NADH dehydrogenase I, as well as chain 5 of the corresponding mitochondrial complex I and subunit 5 (or F) of the chloroplast NAD(P)H-plastoquinone dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273905 [Multi-domain] Cd Length: 609 Bit Score: 184.41 E-value: 5.67e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLM 80
Cdd:TIGR01974 291 AATVALVQNDIKRILAYSTMSQLGYMFLALGVGAYAAAIFHLMTHAFFKALLFLGAGSVIHAM--------HHEQDIRKM 362
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSW--LYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGhlnihf 158
Cdd:TIGR01974 363 GGLRKKMPVTYITFLIGSLALIGFPGFAGFFSKDLILEAAFasGTHSFLFVAGLIGAFLTAFYSFRLIFMVFHG------ 436
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 159 qkysgkksssfysiklwgkeeqkminrnfrlfplltmnknekpytiggnvKKRAFitnfgykkAFSYPHESDNTMLFPML 238
Cdd:TIGR01974 437 --------------------------------------------------KERHE--------ADAHPHESPLVMLLPLI 458
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 239 ILVLFTLFVGAIAIPLNQeemhldilskLLTPSINLLHKNSNDFEDSYQFLTNATFSVSIAgfGIFTAFLLYKpfyssll 318
Cdd:TIGR01974 459 VLAVGSVFAGFFIVPLFE----------FLKGVLPTSAEPALEHHHVPALEIWSPTAVAIL--GILLAYLLYL------- 519
|
330 340 350
....*....|....*....|....*....|....*....
gi 2314329695 319 nlnllnsfsKKGPKRIFLDKIIYLIYDWSYNRGYIDTFY 357
Cdd:TIGR01974 520 ---------GNPTLPAKIAQRHSGLYRLLLNKWYFDELY 549
|
|
| Proton_antipo_M |
pfam00361 |
Proton-conducting membrane transporter; This is a family of membrane transporters that ... |
1-136 |
2.02e-35 |
|
Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.
Pssm-ID: 425636 [Multi-domain] Cd Length: 291 Bit Score: 130.90 E-value: 2.02e-35
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIIHSMEavvgyspeKSQNM 77
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALGAGtiyGIQAAIFHLLTHGLFSAGLFLCAGSVIYRRV--------HTRNI 232
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAG 136
Cdd:pfam00361 233 RDYGGLAKTMPILALVFLVAMLSLAGLPPTAGFLGKFLILAAAVAASWIFLVLAGVVGS 291
|
|
| ND5 |
MTH00210 |
NADH dehydrogenase subunit 5; Provisional |
2-170 |
6.99e-34 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177253 [Multi-domain] Cd Length: 616 Bit Score: 132.05 E-value: 6.99e-34
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgySPEksQNMVLMG 81
Cdd:MTH00210 290 ATVGVVQNDLKKVIAYSTCSQLGYMVMVCGISNYSTSLFHLMNHAFFKALLFLSAGSVIHAV------SDE--QDMRKMG 361
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSW-LYSPIFAI-IAWSTAGLTAFYMFRIYLLTFEGHLNIHFQ 159
Cdd:MTH00210 362 GLIKSIPFTYVMILIGSLSLMGFPYLTGFYSKDLILELTYdKYYIAFAYwLGSFSALLTAFYSIRLIYLTFITNTNSKKE 441
|
170
....*....|.
gi 2314329695 160 KYSGKKSSSFY 170
Cdd:MTH00210 442 VFIGVHESSWN 452
|
|
| HyfB |
COG0651 |
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ... |
1-146 |
7.70e-33 |
|
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];
Pssm-ID: 440416 [Multi-domain] Cd Length: 430 Bit Score: 126.80 E-value: 7.70e-33
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---TALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNM 77
Cdd:COG0651 286 GALGALAQRDLKRLLAYSSVSQIGYILLGLGLGTPLglaGALFHLLNHALAKALLFLAAGAIERAT---------GTRDL 356
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-----SDSWLYSPIFAIiawsTAGLTAFYMFRIY 146
Cdd:COG0651 357 DKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLqaaleAGAWLLAAVLLL----SSLLTLAYFVRIF 426
|
|
| ND5 |
MTH00020 |
NADH dehydrogenase subunit 5; Reviewed |
2-150 |
1.57e-32 |
|
NADH dehydrogenase subunit 5; Reviewed
Pssm-ID: 214400 [Multi-domain] Cd Length: 610 Bit Score: 127.89 E-value: 1.57e-32
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00020 289 ATVGLVQNDLKKVIAYSTCSQLGYMVVACGLSHYSISLFHLMNHAFFKALLFLSAGSVIHAL--------SDEQDMRKMG 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWL-YSPIFAI-IAWSTAGLTAFYMFRIYLLTF 150
Cdd:MTH00020 361 GLISFLPLTYIFFLIGSLSLMGFPYLTGFYSKDLILELAFGqYYLIFAYwLGCFSALLTAFYSIRLIYLTF 431
|
|
| ND5 |
MTH00208 |
NADH dehydrogenase subunit 5; Provisional |
2-150 |
1.21e-31 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177251 [Multi-domain] Cd Length: 628 Bit Score: 125.47 E-value: 1.21e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00208 315 ASTAISQHDIKKIIAYSTTSQLGLMVVAIGLNQPNLALFHICTHAFFKAMLFLCSGSIIHSL--------NNEQDLRKMG 386
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-----SDSWLYSPIFAIIAwstAGLTAFYMFRIYLLTF 150
Cdd:MTH00208 387 GLSFLLPVTSSCIILGSLALMGTPFLAGFYSKDLILeaglaSISNLLSIILALIA---TLLTAVYSFRIIFFCF 457
|
|
| PRK12667 |
PRK12667 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-152 |
6.55e-31 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237167 [Multi-domain] Cd Length: 520 Bit Score: 122.77 E-value: 6.55e-31
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNM 77
Cdd:PRK12667 309 GALMMVVQKDVKRLLAYSTISHMGYIFMGIGIGTqlgLAAALFHIINHAIAKSLLFLASGVFIHAA---------GTRDI 379
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKdEILSDSWLYS--PIFAIIAWSTAGLTAFYMFRIYLLTFEG 152
Cdd:PRK12667 380 DELAGLGRKMPIASFAFLIGALSLVGIPPLNGFFSK-LLLFNALLESgfYLPALVLLIASAISLVGYFRAWYSLFFG 455
|
|
| PRK07390 |
PRK07390 |
NAD(P)H-quinone oxidoreductase subunit F; Validated |
1-152 |
1.05e-30 |
|
NAD(P)H-quinone oxidoreductase subunit F; Validated
Pssm-ID: 236008 [Multi-domain] Cd Length: 613 Bit Score: 122.71 E-value: 1.05e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATL-ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSmeavvgyspEKSQNMVL 79
Cdd:PRK07390 297 GASLvAIAQIDIKRALSYSTSAYLGLVFIAVGLQQPDIALLLLLTHAIAKALLFMSVGSIILT---------TITQDLTE 367
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2314329695 80 MGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEG 152
Cdd:PRK07390 368 LGGLWSRMPATTLAFLVGSAGLVALLPLGGFWALLRLADGLWAVSPWLVGVLLLVNALTAFNLTRVFRLVFLG 440
|
|
| ND5 |
MTH00004 |
NADH dehydrogenase subunit 5; Validated |
2-153 |
1.02e-29 |
|
NADH dehydrogenase subunit 5; Validated
Pssm-ID: 214398 [Multi-domain] Cd Length: 602 Bit Score: 119.88 E-value: 1.02e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00004 288 ATCALTQNDIKKIIAFSTSSQLGLMMVTIGLNQPQLAFLHISTHAFFKAMLFLCSGSIIHNL--------NNEQDIRKMG 359
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKD---EILSDSWLYSPIFAIIAWSTAgLTAFYMFRIYLLTFEGH 153
Cdd:MTH00004 360 GLQKTLPITSSCLTIGNLALMGTPFLSGFYSKDtiiETLNTSYLNAWALLLTLLATS-FTAAYSLRMILLVQTGF 433
|
|
| ND5 |
MTH00151 |
NADH dehydrogenase subunit 5; Provisional |
5-170 |
4.83e-29 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214436 [Multi-domain] Cd Length: 565 Bit Score: 117.64 E-value: 4.83e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEAVvgyspeksQNMVLMGGLR 84
Cdd:MTH00151 258 ACYENDLKKIIALSTLSQLGVMMFSLGLGMPSLALFHLYTHALFKALLFLCAGSIIHSSSGT--------QDIRLLGSLF 329
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 85 KHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS---DSWLYSPIFAIIAWSTaGLTAFYMFRIYLLTFEGHLNIHFqkY 161
Cdd:MTH00151 330 LSLPLTSGCLNISSLSLCGAPFLSGFYSKDLILEsslMSPTSLLMVLLMFVGV-GLTALYSARLSFCLVWGSMKSSS--L 406
|
....*....
gi 2314329695 162 SGKKSSSFY 170
Cdd:MTH00151 407 SSKSDEDFY 415
|
|
| ND5 |
MTH00211 |
NADH dehydrogenase subunit 5; Provisional |
1-153 |
2.14e-28 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214459 [Multi-domain] Cd Length: 597 Bit Score: 116.20 E-value: 2.14e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLM 80
Cdd:MTH00211 282 GALCALTQNDIKKIVAFSTTSQLGLMMVTLGLNQPQLAFLHICTHAFFKAMLFMCSGSIIHGL--------NNEQDIRKM 353
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDswLYSPIFAIIAWSTA----GLTAFYMFRIYLLTFEGH 153
Cdd:MTH00211 354 GGLSKNLPFTSSCLFLGSLALMGFPFLSGFFSKDLILES--MNGSYLNAWALLLTllatSLTAAYSFRLIFLSLGGY 428
|
|
| ND5 |
MTH00165 |
NADH dehydrogenase subunit 5; Provisional |
5-184 |
1.58e-27 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214444 [Multi-domain] Cd Length: 573 Bit Score: 113.31 E-value: 1.58e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEAvvgyspekSQNMVLMGGLR 84
Cdd:MTH00165 261 ANFEFDLKKIIALSTLSQLGLMMSILSLGFPKLAFFHLLTHALFKALLFLCAGSIIHNMSN--------SQDIRFMGGLS 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 85 KHAPITQIAFLIGTLSLCGIPPLACFWSKD---EILSDSWLYSPIFAIIAWSTaGLTAFYMFRIYLltfeghlnihfqkY 161
Cdd:MTH00165 333 NFMPLTSSCFNISNLSLCGFPFLSGFYSKDlilEMVSMSNLNFFIFFLFFFST-GLTVSYSFRLIY-------------Y 398
|
170 180
....*....|....*....|...
gi 2314329695 162 SGKKSSSFYSIKLWGKEEQKMIN 184
Cdd:MTH00165 399 SMSGDFNLKSLNNLSDESKFMLK 421
|
|
| ND5 |
MTH00207 |
NADH dehydrogenase subunit 5; Provisional |
5-275 |
2.42e-27 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 164753 [Multi-domain] Cd Length: 572 Bit Score: 112.94 E-value: 2.42e-27
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMGGLR 84
Cdd:MTH00207 261 AMTECDMKKIIALSTLSQLGVMMASLGLGMPKLALFHLITHALFKALLFVCAGSLIHSH--------HHSQDLRTMGNLT 332
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 85 KHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSwLYSP---IFAIIAWSTAGLTAFYMFRIYLLTfeghlnihfqky 161
Cdd:MTH00207 333 NQMPLTTSCLLIANLALCGSPFLSGFYSKDLILESS-LFYPhnsLMILMIFLATALTAAYSTRFTLAV------------ 399
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 162 sgkksssfysikLWGkeeqkminrnfrlfplltmNKNEKPYtiggnvkkrafitnfgykkafSYPHESDNTMLFPMLILV 241
Cdd:MTH00207 400 ------------LWS-------------------PNSSSPY---------------------HHLEDEDKSLTTPMLLLT 427
|
250 260 270
....*....|....*....|....*....|....*..
gi 2314329695 242 LFTLFVGAI---AIPLNQEEMHLDILSKLLTPSINLL 275
Cdd:MTH00207 428 LGAITSGSAlnwWLPTPQEEPILPLQYKLLPLLVVTL 464
|
|
| ND5 |
MTH00066 |
NADH dehydrogenase subunit 5; Provisional |
2-145 |
1.84e-26 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214416 [Multi-domain] Cd Length: 598 Bit Score: 110.38 E-value: 1.84e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00066 286 AACALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFFHICTHAFFKAMLFLCSGSIIHSL--------NDEQDIRKMG 357
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS-------DSWlySPIFAIIAWStagLTAFYMFRI 145
Cdd:MTH00066 358 GLQKALPITTSCLTIGSLALTGTPFLAGFFSKDAIIEamntsnlNSW--ALILTLIATS---FTAVYSFRI 423
|
|
| ND5 |
MTH00137 |
NADH dehydrogenase subunit 5; Provisional |
2-145 |
2.88e-26 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214428 [Multi-domain] Cd Length: 611 Bit Score: 109.92 E-value: 2.88e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00137 294 ATCALTQNDIKKIVAFSTSSQLGLMMVTIGLNQPQLAFLHICTHAFFKAMLFLCSGSIIHSL--------NDEQDIRKMG 365
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEI---LSDSWL--YSPIFAIIAWStagLTAFYMFRI 145
Cdd:MTH00137 366 GLHHLTPFTSSCLTIGSLALTGTPFLAGFFSKDAIieaLNTSHLnaWALTLTLIATS---FTAVYSLRV 431
|
|
| PRK08376 |
PRK08376 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-152 |
1.49e-25 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236252 [Multi-domain] Cd Length: 521 Bit Score: 107.49 E-value: 1.49e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG--SYRT-------------ALFHLITHAYSKALLFLGSGSIIHsmea 65
Cdd:PRK08376 301 GVAMAVVQKDVKRLLAYHSVSQIGYMLLGLGVGlaALGDpamasygeialagGIYHIVNHALYKALLFLTAGAVIY---- 376
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 66 VVGyspekSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRI 145
Cdd:PRK08376 377 ETG-----TRNLNELGGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLIYESSALFNPILGVIAMIGSVLTLASFVKV 451
|
....*..
gi 2314329695 146 YLLTFEG 152
Cdd:PRK08376 452 FHTAFFG 458
|
|
| ND5 |
MTH00108 |
NADH dehydrogenase subunit 5; Provisional |
2-153 |
1.90e-24 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177170 [Multi-domain] Cd Length: 602 Bit Score: 104.55 E-value: 1.90e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMG 81
Cdd:MTH00108 289 AICALTQNDIKKIVAFSTSSQLGLMMVTIGINQPHLAFLHICTHAFFKAMLFMCSGSIIHNL--------NDEQDIRKMG 360
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-------SDSWLYSpiFAIIAWStagLTAFYMFRIYLLTFEGH 153
Cdd:MTH00108 361 GLFKTLPFTSTALIIGSLALTGMPFLTGFYSKDLIIeaantsyTNAWALL--ITLIATS---LTAAYSTRIIFFALLGQ 434
|
|
| NuoM |
COG1008 |
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ... |
1-161 |
2.77e-24 |
|
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440632 [Multi-domain] Cd Length: 488 Bit Score: 103.24 E-value: 2.77e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNM 77
Cdd:COG1008 289 GALVALAQTDLKRLIAYSSVSHMGFVLLGIFALnplGLQGAVLQMVSHGLITAALFLLVGVLYDRT---------HTRDI 359
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIH 157
Cdd:COG1008 360 ADLGGLAKRMPVLAALFLLAALASLGLPGTSGFVGEFLVLLGAFQVNPWLAILAALGLILTAAYLLWMYQRVFFGPLKEE 439
|
....
gi 2314329695 158 FQKY 161
Cdd:COG1008 440 LAEL 443
|
|
| ND5 |
MTH00209 |
NADH dehydrogenase subunit 5; Provisional |
5-156 |
3.93e-24 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177252 [Multi-domain] Cd Length: 564 Bit Score: 103.57 E-value: 3.93e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspEKSQNMVLMGGLR 84
Cdd:MTH00209 257 ANVESDLKKIIALSTLSQLGLMMCSLGLNQPELAFFHLITHALFKALLFICAGNIIHSH--------GHSQDIRMVGNLW 328
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2314329695 85 KHAPITQIAFLIGTLSLCGIPPLACFWSKDEILsDSWLYS--PIFAIIAWSTA-GLTAFYMFRIYLLTFEGHLNI 156
Cdd:MTH00209 329 YQMPITSICLNIANLSLCGIPFLAGFYSKDLIL-ESMLESnmPIMTLILMFLStSLTAAYSMRLSYFSLWGPNSS 402
|
|
| PRK08375 |
PRK08375 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-145 |
4.07e-24 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 236251 [Multi-domain] Cd Length: 487 Bit Score: 103.04 E-value: 4.07e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRT---ALFHLITHAYSKALLFLGSGSIihsmEAVVGyspekSQNM 77
Cdd:PRK08375 285 GSLAALGQDDVKRVLAYSTVSQMGYILLGLALLTPLAlaaGLLHLLHHALMKGALFLAAGAI----EVTYG-----TRRL 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS---DSWLYSPIFAIIAWSTagLTAFYMFRI 145
Cdd:PRK08375 356 SELSGLGRRMPLTAAAFAVASLSLIGVPPTSGFVSKWYLVVgavEAGQWLVLAVLLASSL--LALLYFLRI 424
|
|
| ND5 |
MTH00032 |
NADH dehydrogenase subunit 5; Provisional |
2-117 |
7.39e-24 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214407 [Multi-domain] Cd Length: 669 Bit Score: 102.73 E-value: 7.39e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYMMLALGM-GSYRTALFHLITHAYSKALLFLGSGSIIHSMEAvvgyspeKSQNMVLM 80
Cdd:MTH00032 304 ATVGLVQNDLKKVIAYSTCSQLGYMVLIIGIeGSHNVGLFHLVNHAFFKALLFLSAGSVIHSTTV-------DEQDMRKM 376
|
90 100 110
....*....|....*....|....*....|....*..
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL 117
Cdd:MTH00032 377 GGLIHSIPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL 413
|
|
| PRK06521 |
PRK06521 |
hydrogenase 4 subunit B; Validated |
5-152 |
8.90e-22 |
|
hydrogenase 4 subunit B; Validated
Pssm-ID: 235820 [Multi-domain] Cd Length: 667 Bit Score: 96.50 E-value: 8.90e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMG--------------SYRTALFHLITHAYSKALLFLGSGSIIHSMEavvgys 70
Cdd:PRK06521 294 ALAEHDLKRLLAYSTIENIGIIFVGLGLAmvfiaygmpllaalALTAALYHLLNHALFKSLLFLGAGAVLHATG------ 367
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 71 pekSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSK----DEILS----DSWLYS---PIFAIIAWSTAGLTA 139
Cdd:PRK06521 368 ---TRDMEKLGGLIRRMPWTAWAFLIGCLAISALPPLNGFVSEwlllQSLLSspglPQWGLKlavPIAAAMLALTAALAA 444
|
170
....*....|...
gi 2314329695 140 FYMFRIYLLTFEG 152
Cdd:PRK06521 445 MCFVKFYGITFLG 457
|
|
| PRK06525 |
PRK06525 |
hydrogenase 4 subunit D; Validated |
6-130 |
1.31e-18 |
|
hydrogenase 4 subunit D; Validated
Pssm-ID: 180606 [Multi-domain] Cd Length: 479 Bit Score: 86.57 E-value: 1.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 6 LAQKDIKRGLAYSTMSQLGYMMLALGMGSY--RTAL----FHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNMVL 79
Cdd:PRK06525 291 LPQQDMKRLLAYSTITQLGYMFFGLSLAILgsRLALegsiAYIFNHAFAKSLFFLVAGALSYSC---------GTRLLPR 361
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 80 MGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAII 130
Cdd:PRK06525 362 LRGVLKKLPLVGVGFCVAALAITGVPPFNGFFSKFPIFAAGFELSVEYWIL 412
|
|
| PRK08668 |
PRK08668 |
NADH dehydrogenase subunit M; Validated |
1-113 |
1.17e-17 |
|
NADH dehydrogenase subunit M; Validated
Pssm-ID: 236332 [Multi-domain] Cd Length: 610 Bit Score: 84.28 E-value: 1.17e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNM 77
Cdd:PRK08668 286 GTLMAILQEDIKKLIAYSSVANGGYILVGLGLGtslGFAGGLFHVFNHALFKGLFFLIFAAVIYRT---------GTTKI 356
|
90 100 110
....*....|....*....|....*....|....*.
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSK 113
Cdd:PRK08668 357 SEMGGLIEKMPFTFAMYLVAIISLAGIPPMSGFASK 392
|
|
| PRK08377 |
PRK08377 |
NADH dehydrogenase subunit N; Validated |
5-152 |
1.99e-17 |
|
NADH dehydrogenase subunit N; Validated
Pssm-ID: 181406 [Multi-domain] Cd Length: 494 Bit Score: 83.28 E-value: 1.99e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNMVLMG 81
Cdd:PRK08377 291 ALRQKNVKRMIAYSSIGQVGMIALALALGTqagVDAGVFHMINHAIVKALLFLAVGYVGITL---------GGTEIEKFE 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL--SDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEG 152
Cdd:PRK08377 362 GLGKRMPLTALALTIGALSTVGIPLFNVFWSKFRIIlaGLSAGYTWPVALVLGASVVEAVYYFRLIHTMWFKG 434
|
|
| PRK12647 |
PRK12647 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
1-148 |
7.30e-17 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237156 [Multi-domain] Cd Length: 761 Bit Score: 81.89 E-value: 7.30e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHSmeavVGyspekSQNM 77
Cdd:PRK12647 273 GALLAVRQTDLKLILAYSTVSALGTLVMLLGLGSelaIKAAVLFLVAHSLYKGALFMVAGIIDHE----TG-----TRDI 343
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILsDSWLYSPIFAIIAWSTAGLTAFYMFRIYLL 148
Cdd:PRK12647 344 TKLGGLRRAMPITAAAALLAALSMAGLPPLFGFLAKELIY-EALLEAPLWSLILTVAAVLGNALMVAVAFL 413
|
|
| PRK05846 |
PRK05846 |
NADH:ubiquinone oxidoreductase subunit M; Reviewed |
1-155 |
2.76e-16 |
|
NADH:ubiquinone oxidoreductase subunit M; Reviewed
Pssm-ID: 235622 [Multi-domain] Cd Length: 497 Bit Score: 79.86 E-value: 2.76e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNM 77
Cdd:PRK05846 291 GALVALAQTDIKKLIAYSSISHMGFVTLGIFAGNqlgIQGAIFQMISHGLSSAALFLLVGVLYDRL---------HTRDI 361
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLN 155
Cdd:PRK05846 362 ADYGGLAKVMPVLAAFFLFFAMASLGLPGTSGFVGEFLILLGSFQVNPVIAFIATTGLILAAVYSLWLYQRVMFGPVK 439
|
|
| NuoN |
COG1007 |
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ... |
1-145 |
2.88e-16 |
|
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase
Pssm-ID: 440631 [Multi-domain] Cd Length: 473 Bit Score: 79.78 E-value: 2.88e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLgsgsIIhsmeAVVGYSPEKSQNM 77
Cdd:COG1007 283 GNLAALAQTNVKRMLAYSSIAHAGYLLLGLAAGTplgVSAALFYLLAYLFMNLGAFA----VI----LLLSRKGGEAEEI 354
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDS------WLyspifAIIAWSTAGLTAFYMFRI 145
Cdd:COG1007 355 EDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAveaglyWL-----AVIAVLNSVISAYYYLRV 423
|
|
| PRK06589 |
PRK06589 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
4-145 |
3.13e-16 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235835 [Multi-domain] Cd Length: 489 Bit Score: 79.48 E-value: 3.13e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 4 LALAQKDIKRGLAYSTMSQLGYMMLALGM---GSYRTALFHLITHAYSKALLFLGSGSIihsmeavvgYSPEKSQNMVLM 80
Cdd:PRK06589 297 KALKTDNIKKILAYSTISQLSLALLSAFIltpKALGAAILHLVSHSFAKICLFYSMGSI---------YSLKKEDQVDKL 367
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-----SDSWLYSPIFAIIAWSTAGLTAFYMFRI 145
Cdd:PRK06589 368 HGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILlaaseQNQPWLSIIVMLVVIASSILSALYLLKI 437
|
|
| NDH_I_M |
TIGR01972 |
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ... |
1-161 |
3.65e-16 |
|
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]
Pssm-ID: 273903 [Multi-domain] Cd Length: 481 Bit Score: 79.21 E-value: 3.65e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIihsmeavvgYSPEKSQNM 77
Cdd:TIGR01972 283 GALIALAQTDIKRLIAYSSISHMGFVLLGIFSFnelGISGAVFQMISHGLITAALFLLVGVL---------YERAHTRDI 353
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIH 157
Cdd:TIGR01972 354 AKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGEFLILLGSFKVNPVVAFLAALGIVLAAAYMLTLYKRVFFGELSNP 433
|
....
gi 2314329695 158 FQKY 161
Cdd:TIGR01972 434 EVAE 437
|
|
| PRK12650 |
PRK12650 |
DUF4040 family protein; |
1-143 |
2.34e-15 |
|
DUF4040 family protein;
Pssm-ID: 237158 [Multi-domain] Cd Length: 962 Bit Score: 77.39 E-value: 2.34e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHsmEAvvgyspeKSQNM 77
Cdd:PRK12650 286 GAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTpfaLTAAVVHTLAHALFKSSLFMLIGVVDH--QA-------GTRDI 356
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKdEILSDSWLYSPIFAIIAW---STAGLTAFYMF 143
Cdd:PRK12650 357 RRLGSLWRRMPFTFVSVTIAALSMAAVPPLFGFVSK-EGMLTAFLEAPGGNAGVVlllVGAALGAVFTF 424
|
|
| PRK12668 |
PRK12668 |
Na(+)/H(+) antiporter subunit D; |
1-118 |
2.64e-15 |
|
Na(+)/H(+) antiporter subunit D;
Pssm-ID: 237168 [Multi-domain] Cd Length: 581 Bit Score: 76.86 E-value: 2.64e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRT---ALFHLITHAYSKALLFLGSGSIIHsmeaVVGYSpeksqNM 77
Cdd:PRK12668 254 GVFFALLENDLRRLLSYHIVSQVGYMVAGIGIGTALAingAVAHAFNHILYKGLLFMSAGAVLY----RTGTE-----KL 324
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS 118
Cdd:PRK12668 325 TELGGLYRSMPLTALFCLVGALSISAFPLFSGFVSKSMIIS 365
|
|
| PRK12649 |
PRK12649 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
4-114 |
4.13e-15 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 183649 [Multi-domain] Cd Length: 789 Bit Score: 76.79 E-value: 4.13e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 4 LALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR-------TALFHLITHAYSKALLFLGSGSIIHsmEAVvgyspekSQN 76
Cdd:PRK12649 295 LAFRQTDIKAILAYSTISQLAYLMTMYGYTTYHepglgvaAATFHLLNHATFKACLFLVAGIVAH--EAA-------TRD 365
|
90 100 110
....*....|....*....|....*....|....*...
gi 2314329695 77 MVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKD 114
Cdd:PRK12649 366 IRKLGGLRKEMPITFIVASIAALAMAGIPPLNGFLSKE 403
|
|
| PRK05777 |
PRK05777 |
NADH-quinone oxidoreductase subunit NuoN; |
1-145 |
5.67e-15 |
|
NADH-quinone oxidoreductase subunit NuoN;
Pssm-ID: 235603 [Multi-domain] Cd Length: 476 Bit Score: 75.63 E-value: 5.67e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKallfLGSGSIIHSMEAVVGYSPEKSQnm 77
Cdd:PRK05777 284 GNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTaegYSAVLFYLLAYLFMT----LGAFGVISLLRRKGGEAESISD-- 357
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2314329695 78 vlMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDS------WLyspifAIIAWSTAGLTAFYMFRI 145
Cdd:PRK05777 358 --FAGLSKRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAveaglwWL-----AVIGVLNSAIGAFYYLRV 424
|
|
| PRK12646 |
PRK12646 |
DUF4040 family protein; |
1-156 |
2.27e-14 |
|
DUF4040 family protein;
Pssm-ID: 183646 [Multi-domain] Cd Length: 800 Bit Score: 74.41 E-value: 2.27e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------------SYRTALFHLITHAYSKALLFLGSGSIIHSm 63
Cdd:PRK12646 288 GSITALKQWDLKGILAYSTISQLGMIMAMVGIGggyaqhqqdaiasiyvfVLFAALFHLMNHAIFKCALFMGVGIIDHE- 366
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 64 eavvgyspEKSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKD----------EILSDSWLYSPIFAIIAWS 133
Cdd:PRK12646 367 --------AGTRDIRILSGMRQLFPKMNLVMTIAALSMAGVPFLNGFLSKEmfldaltqtgQLSQFSLISMIIIVFIGVI 438
|
170 180
....*....|....*....|...
gi 2314329695 134 TAGLTAFYMFRIYLLTFEGHLNI 156
Cdd:PRK12646 439 ASIFTFTYALYMVKEVFWGKYDS 461
|
|
| PRK06458 |
PRK06458 |
hydrogenase 4 subunit F; Validated |
6-129 |
4.21e-14 |
|
hydrogenase 4 subunit F; Validated
Pssm-ID: 235805 [Multi-domain] Cd Length: 490 Bit Score: 73.04 E-value: 4.21e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 6 LAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIIHSMeavvgyspeKSQNMVLMGG 82
Cdd:PRK06458 300 LRQRDIKRLFAYSSIEHMGLIAFALGIGGplgIFAALLHMLNHSLTKSAIFFASGNVLQKY---------GTRDINVIRG 370
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|..
gi 2314329695 83 LRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDS-----WLYSPIFAI 129
Cdd:PRK06458 371 LLKVSPLTGWGLMLGALAIAGMPPFGVFISEFLILTAGlargpLLIAILLLL 422
|
|
| PRK12645 |
PRK12645 |
monovalent cation/H+ antiporter subunit A; Reviewed |
1-153 |
4.46e-14 |
|
monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237155 [Multi-domain] Cd Length: 800 Bit Score: 73.42 E-value: 4.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS----------------YRTALFHLITHAYSKALLFLGSGSIIHSme 64
Cdd:PRK12645 288 GSLNAVKQTDLKGILAFSTVSQLGLIMSLLGIGAaslhyqgddskiyaaaITAAIFHLINHATFKGSLFMIVGIVDHE-- 365
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 65 avVGyspekSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS-------------DSWLYspIFAIIA 131
Cdd:PRK12645 366 --TG-----TRDIRKLGGLMTIMPITFTIALIGALSMAGLPPFNGFLSKEMFFEsmlnateanlfslDTWGV--LFPVIA 436
|
170 180
....*....|....*....|..
gi 2314329695 132 WSTAGLTAFYMFRIYLLTFEGH 153
Cdd:PRK12645 437 WVASVFTFVYSIIFIFKTFFGK 458
|
|
| PRK12663 |
PRK12663 |
Na+/H+ antiporter subunit D; |
1-150 |
7.60e-14 |
|
Na+/H+ antiporter subunit D;
Pssm-ID: 237163 [Multi-domain] Cd Length: 497 Bit Score: 72.29 E-value: 7.60e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSY---RTALFHLITHAYSKALLFLGSGSIIhsmeAVVGYSPEKSqnm 77
Cdd:PRK12663 286 GALGALAYKDIRRIAGYQVISSIGFILLGLALGTPagiNGAIFYLVHDMVVKTALFLIAGSLV----RLTGYRSLQY--- 358
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 78 vlMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDS------WLYSPIFAiiawsTAGLTAFYMFRIYLLTF 150
Cdd:PRK12663 359 --LGGLYRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQGAldngayILLALMLI-----TSLITMYSLFRIFFLAY 430
|
|
| PRK12665 |
PRK12665 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-150 |
3.33e-13 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 237165 [Multi-domain] Cd Length: 521 Bit Score: 70.38 E-value: 3.33e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFLGSGSIihsmEAVVGyspekSQNM 77
Cdd:PRK12665 287 GILGAIAQSDIKRLLSFTLVSHIGYMVFGIALSTvagLSGAIYYVAHHITVQTTLFLVVGLI----ERQAG-----SSSL 357
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-----SDSWLyspIFAIIAWS--TAGLTAFYMFRIYLLTF 150
Cdd:PRK12665 358 RRLGGLAKASPLLAVLFFVPALNLGGIPPFSGFIGKVALLeagaeDGTWL---AWALVAGGvvTSLLTLYAVARVWTKAF 434
|
|
| PRK07691 |
PRK07691 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
5-152 |
8.15e-13 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 181085 [Multi-domain] Cd Length: 496 Bit Score: 69.21 E-value: 8.15e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLgsgsIIHSMEAVVGYSPEKSqnmvlMG 81
Cdd:PRK07691 293 AVAYFDIKKIIIYNIMIAVGVILVGVAMMtesGMIGAIYYLIHDMIVKAALFL----LIGIMIKITGTTDLKK-----MG 363
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLY-SPIFAIIAWSTAGLTAFYMFRIYLLTFEG 152
Cdd:PRK07691 364 GLIKRYPVLGWMFFIAALSLAGIPPLSGFYGKFFIVEGTFEAgFYVSGIIVLLSSLLVLYSVIKIFLKGFWG 435
|
|
| PRK08042 |
PRK08042 |
formate hydrogenlyase subunit 3; Reviewed |
1-152 |
3.35e-12 |
|
formate hydrogenlyase subunit 3; Reviewed
Pssm-ID: 181206 [Multi-domain] Cd Length: 593 Bit Score: 67.54 E-value: 3.35e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTA--------------LFHLITHAYSKALLFLGSGSIIHSmeav 66
Cdd:PRK08042 259 GGLYALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIAleqpalialglvggLYHLLNHSLFKSVLFLGAGSVWFR---- 334
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 67 VGYspeksQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEI------LSDSWLY-----SPIFAIIAWSTA 135
Cdd:PRK08042 335 TGH-----RDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIyqsffkLSNSGAFvarllGPLLAVGLAITG 409
|
170
....*....|....*..
gi 2314329695 136 GLTAFYMFRIYLLTFEG 152
Cdd:PRK08042 410 ALAVMCMAKVYGVTFLG 426
|
|
| PRK12644 |
PRK12644 |
putative monovalent cation/H+ antiporter subunit A; Reviewed |
5-113 |
4.95e-12 |
|
putative monovalent cation/H+ antiporter subunit A; Reviewed
Pssm-ID: 237154 [Multi-domain] Cd Length: 965 Bit Score: 67.26 E-value: 4.95e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHL---ITHAYSKALLFLGSGSIIHSmeavVGyspekSQNMVLMG 81
Cdd:PRK12644 285 ALRQHDLKLILAYGTVSQLGFLTVLVGIGTRDAALAGLamlLAHALFKAALFLVVGIIDHS----TG-----TRDIRKLS 355
|
90 100 110
....*....|....*....|....*....|..
gi 2314329695 82 GLRKHAPITQIAFLIGTLSLCGIPPLACFWSK 113
Cdd:PRK12644 356 GLGRRQPVLAVVAALAAASMAGLPPLLGFVAK 387
|
|
| PRK08667 |
PRK08667 |
hydrogenase membrane subunit; Validated |
1-113 |
1.56e-11 |
|
hydrogenase membrane subunit; Validated
Pssm-ID: 236331 [Multi-domain] Cd Length: 644 Bit Score: 65.52 E-value: 1.56e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALG--------------MGSYRTALFHLITHAYSKALLFLGSGSIIHSMeav 66
Cdd:PRK08667 284 GVIYALKEHDLKGLLAYSSIENIGIILMGIGlyvifgvygldtlaLLALGGALFHSLNHALFKSLLFLTAGSVVHAT--- 360
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 2314329695 67 vgyspeKSQNMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSK 113
Cdd:PRK08667 361 ------GTRNIEKMGGLVKLMPYTSALFLVGAVSIAALPPFNGFASE 401
|
|
| PRK06277 |
PRK06277 |
energy conserving hydrogenase EhbF; |
1-113 |
3.57e-11 |
|
energy conserving hydrogenase EhbF;
Pssm-ID: 235767 [Multi-domain] Cd Length: 478 Bit Score: 64.28 E-value: 3.57e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIihsmeavvgYSPEKSQNM 77
Cdd:PRK06277 280 GVVMALLQTDYKRLLAYHAISQGGYVAAGLALGtplGIVAGIFHAINHVIYKSALFLGAGIV---------SYRTKTSNL 350
|
90 100 110
....*....|....*....|....*....|....*.
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSK 113
Cdd:PRK06277 351 RKLGGLLPVMPVVAFMVLCAKLAISGVPPFNGFQSK 386
|
|
| PRK08601 |
PRK08601 |
NADH dehydrogenase subunit 5; Validated |
1-82 |
4.64e-11 |
|
NADH dehydrogenase subunit 5; Validated
Pssm-ID: 236310 [Multi-domain] Cd Length: 509 Bit Score: 63.90 E-value: 4.64e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEaVVGYSPEKSQNMVLM 80
Cdd:PRK08601 280 GTGISLVQVDYKRQLVGSTMAQMGFMLVQCALGAYSAAIIHLILHGLFKATLFLQSGSAVPRFN-IVKQANEKKSYLWIV 358
|
..
gi 2314329695 81 GG 82
Cdd:PRK08601 359 VG 360
|
|
| PRK07234 |
PRK07234 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-152 |
9.38e-11 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 235978 [Multi-domain] Cd Length: 470 Bit Score: 62.66 E-value: 9.38e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGsyrtALFHLiTHAYSKALLFLGSGsIIHSmeavvgYSPEKSQNMVLM 80
Cdd:PRK07234 259 GVLFALLEKDLKRMLAFSTISQLGFILAAPLVG----GLYAL-AHGLVKSTLFLCAG-ALPS------RNFTELISQMLG 326
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2314329695 81 GGLRkhapitqIAFLIGTLSLCGIPPLACFWSKDEILSDswlYSPIFAIIAWSTAGLTAFYMFRIYLLTFEG 152
Cdd:PRK07234 327 IGKW-------IPLTMASFSIAGFPLLAGFVSKVLTLKN---LLPWQAIALNLAAVGTAASFWKFIFLPFSA 388
|
|
| PRK12662 |
PRK12662 |
putative monovalent cation/H+ antiporter subunit D; Reviewed |
1-145 |
2.37e-10 |
|
putative monovalent cation/H+ antiporter subunit D; Reviewed
Pssm-ID: 183662 [Multi-domain] Cd Length: 492 Bit Score: 61.67 E-value: 2.37e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYR---TALFHLITHAYSKALLFLGSGSIIHsmeavvGYSPEKSQNM 77
Cdd:PRK12662 293 GSVLAILSKDIKRIFAYSSISHIGYIILAVSLNTYYglaAAVAYIVNHSIVKSALFMVSGSISY------HFGTTKLEDC 366
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 78 VlmgGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILS---DSWLYSPIFAIIAWStaGLTAFYMFRI 145
Cdd:PRK12662 367 L---NLWKSMPKITLAFVLLSLSLIGMPPTSGFVAKWYILDafiKSNAWIGLVVLLVGS--GLSVIYVWKI 432
|
|
| NDH_I_N |
TIGR01770 |
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ... |
1-145 |
4.39e-10 |
|
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]
Pssm-ID: 273795 [Multi-domain] Cd Length: 468 Bit Score: 60.73 E-value: 4.39e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITHAYSKALLFlgsgSIIHSMEAvvgYSPEKSQNM 77
Cdd:TIGR01770 283 GNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTlegIKAVLFYIFIYALMSLGAF----GVLSLLRS---YKDEWIEYI 355
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL-----SDSWLYSPIFAIiawsTAGLTAFYMFRI 145
Cdd:TIGR01770 356 SDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFfallkSGLYWLAVIAVL----TSVIGAFYYLRV 424
|
|
| ND5 |
MTH00095 |
NADH dehydrogenase subunit 5; Provisional |
5-150 |
1.45e-09 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 177158 [Multi-domain] Cd Length: 527 Bit Score: 59.16 E-value: 1.45e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 5 ALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSM---EAVVGYSPEKSQNMVLmg 81
Cdd:MTH00095 245 ALVEEDMKKVVALSTLSQMGFSMLTFGSGLSFVSFIHLLSHALFKSCLFMQVGYLIHSNfgqQDGRNYSNNGNLPMFI-- 322
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2314329695 82 glrkhapitQIAFLIGTLSLCGIPPLACFWSKDEILSDSWL--YSPIFAIIAWSTAGLTAFYMFRIYLLTF 150
Cdd:MTH00095 323 ---------QLQLLVTLFCLCGLMFTSGMVSKELILELFFFnnYMIFFSLMFFFSVFLTFGYSYRLWKSFF 384
|
|
| PRK08168 |
PRK08168 |
NADH-quinone oxidoreductase subunit L; |
11-60 |
7.66e-09 |
|
NADH-quinone oxidoreductase subunit L;
Pssm-ID: 236171 [Multi-domain] Cd Length: 516 Bit Score: 57.02 E-value: 7.66e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 2314329695 11 IKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSII 60
Cdd:PRK08168 287 IKVRLAWSTVAQMGFMLLECGLGLYELALLHLVAHSLYKAHAFLSASEAV 336
|
|
| PRK12561 |
PRK12561 |
NAD(P)H-quinone oxidoreductase subunit 4; Provisional |
1-149 |
2.36e-08 |
|
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
Pssm-ID: 237137 [Multi-domain] Cd Length: 504 Bit Score: 55.42 E-value: 2.36e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMlaLGMGSYRT-----ALFHLITHAYSKALLFLGSGsiihsmeavVGYSPEKSQ 75
Cdd:PRK12561 265 GALNAFAQDNVKRRLAYSSVSHMGFVL--LGIAAFTDlgisgAMLQMISHGLIAAALFFLTG---------VTYERTHTL 333
|
90 100 110 120 130 140 150
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2314329695 76 NMVLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEI---LSDSWLYSPIFAIIawsTAGLTA--FYMFRIYLLT 149
Cdd:PRK12561 334 SIPNMGGLAKVMPKTFALFTASSMASLALPGMSGFVSELTVflgITSSDVYSSTFRTI---TILLAAvgLILTPIYLLS 409
|
|
| PRK06473 |
PRK06473 |
NADH-quinone oxidoreductase subunit M; |
1-141 |
8.42e-08 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 235810 [Multi-domain] Cd Length: 500 Bit Score: 53.55 E-value: 8.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGsiihsmeavVGYSPEKSQNM 77
Cdd:PRK06473 285 GASCAIAQKDMKKMVAYSSIGHMGYILLAAAAAtplSILAAVFQMISHGLISALLFLLVG---------VVYKKTGSRDV 355
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2314329695 78 VLMGGL---RKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFY 141
Cdd:PRK06473 356 DVLRGLlnpERGLPITGSLMILGVMASAGIPGMVGFIAEFLVFRGSFPIFPVQTLLCMIGTGLTAVY 422
|
|
| ND2 |
MTH00196 |
NADH dehydrogenase subunit 2; Provisional |
1-130 |
1.91e-07 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214453 [Multi-domain] Cd Length: 365 Bit Score: 52.34 E-value: 1.91e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSY---RTALFHLITHAYSKALLFlgsgSIIhsmeavVGYSPEKSQnM 77
Cdd:MTH00196 166 GAIGALNQTKIKRLLAYSGIGHMGFVLWGIEIGSFesiQASLVYLFIYIIMSICVF----SII------LALNVYKNL-I 234
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|...
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAII 130
Cdd:MTH00196 235 IEFSGLSRRLPILAITLALTFLSIAGIPPLVGFLGKWLILLSGVVYQYYLIFL 287
|
|
| PRK07363 |
PRK07363 |
NADH-quinone oxidoreductase subunit M; |
1-161 |
2.01e-07 |
|
NADH-quinone oxidoreductase subunit M;
Pssm-ID: 180945 [Multi-domain] Cd Length: 501 Bit Score: 52.41 E-value: 2.01e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMG---SYRTALFHLITHAYSKALLFLGSGSIihsmEAVVGYSPEKSQNM 77
Cdd:PRK07363 285 GALSAIAQKDIKRMVAYSSIGHMGYILVAAAAGtqlSLLGAVAQMISHGLILALLFHLVGIV----ERKVGTRDLDVLNG 360
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 78 vLMGGLRKhAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIH 157
Cdd:PRK07363 361 -LMNPIRG-LPLTSALLVLAGMASAGIPGLVGFVAEFIVFQGSFSTFPIPTLLCIVASGLTAVYFVILLNRTCFGRLDNK 438
|
....
gi 2314329695 158 FQKY 161
Cdd:PRK07363 439 LAYY 442
|
|
| PRK02504 |
PRK02504 |
NAD(P)H-quinone oxidoreductase subunit N; |
1-113 |
8.44e-07 |
|
NAD(P)H-quinone oxidoreductase subunit N;
Pssm-ID: 235044 [Multi-domain] Cd Length: 513 Bit Score: 50.43 E-value: 8.44e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGS---YRTALFHLITH------AYSKALLF-LGSGSiihsmEAVVGYS 70
Cdd:PRK02504 290 GNVVALAQTSMKRMLAYSSIGQAGFVMIGLVAGTeagYASMVFYLLAYlfmnlgAFACVILFsLRTGT-----DQISDYA 364
|
90 100 110 120
....*....|....*....|....*....|....*....|...
gi 2314329695 71 peksqnmvlmgGLRKHAPITQIAFLIGTLSLCGIPPLACFWSK 113
Cdd:PRK02504 365 -----------GLYQKDPLLTLGLSLCLLSLGGIPPLAGFFGK 396
|
|
| ndhB |
CHL00049 |
NADH dehydrogenase subunit 2 |
1-174 |
2.34e-06 |
|
NADH dehydrogenase subunit 2
Pssm-ID: 176990 [Multi-domain] Cd Length: 494 Bit Score: 49.23 E-value: 2.34e-06
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIHSMEAVVGyspekSQNMVLM 80
Cdd:CHL00049 294 GNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNDGYASMITYMLFYIFMNLGTFACIVLFGLRTG-----TDNIRDY 368
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSW---LYSPIFaiIAWSTAGLTAFYMFRIYLLTFEGH---L 154
Cdd:CHL00049 369 AGLYTKDPFLALSLALCLLSLGGIPPLAGFFGKLYLFWCGWqagLYFLVS--IGLLTSVISIYYYLKIIKLLMTGRnqeI 446
|
170 180
....*....|....*....|
gi 2314329695 155 NIHFQKYSGKKSSSFYSIKL 174
Cdd:CHL00049 447 TPYVRNYRRSPLRSNNSIEL 466
|
|
| ND2 |
MTH00199 |
NADH dehydrogenase subunit 2; Provisional |
1-117 |
1.17e-05 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 177245 [Multi-domain] Cd Length: 460 Bit Score: 46.93 E-value: 1.17e-05
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRT---ALFHLITHayskALLFLGSGSIIHSMEAVVGYspeksqnM 77
Cdd:MTH00199 261 GAIGALNQTKIKRLLAYSGIGHMGFILFGVAIGSFESiqaSLIYMIIY----VIMSICSFSIILSLKLTKGL-------I 329
|
90 100 110 120
....*....|....*....|....*....|....*....|
gi 2314329695 78 VLMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEIL 117
Cdd:MTH00199 330 VEVSGLSRKNPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
|
|
| ND2 |
MTH00198 |
NADH dehydrogenase subunit 2; Provisional |
1-145 |
3.73e-04 |
|
NADH dehydrogenase subunit 2; Provisional
Pssm-ID: 214454 [Multi-domain] Cd Length: 607 Bit Score: 42.54 E-value: 3.73e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 1 GATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRtALFHLITHAYSKALLFLGSGSIIHSMEAVVGYSPEKSQNMVLM 80
Cdd:MTH00198 370 GAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYE-SLQASWTYAVTYLVSALASFTVICTLEEFGTRTPTSRQRDGSF 448
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 81 GG------------LRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDS----WLYS-PIF---AIIAWSTAGLTAF 140
Cdd:MTH00198 449 GNynlvrrlvdltiLSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFILVGSikiaFSSSlSIYylvALFAIICTCISAF 528
|
....*
gi 2314329695 141 YMFRI 145
Cdd:MTH00198 529 YYIRI 533
|
|
| ND4 |
MTH00127 |
NADH dehydrogenase subunit 4; Provisional |
2-159 |
6.11e-04 |
|
NADH dehydrogenase subunit 4; Provisional
Pssm-ID: 177186 [Multi-domain] Cd Length: 459 Bit Score: 41.48 E-value: 6.11e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 2 ATLALAQKDIKRGLAYSTMSQLGYM---MLALGMGSYRTALFHLITHAYSKALLFLgsgsiihsmEAVVGYSPEKSQNMV 78
Cdd:MTH00127 274 GSICLRQTDLKSLIAYSSVSHMGLVaggILIQTPWGFTGALILMIAHGLTSSALFC---------LANTNYERTHSRTML 344
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 79 LMGGLRKHAPITQIAFLIGTLSLCGIPPLACFWSKDEILSDSWLYSPIFAIIAWSTAGLTAFYMFRIYLLTFEGHLNIHF 158
Cdd:MTH00127 345 LARGLQMILPLMATWWFIASLANLALPPLPNLMGELMIITSLFNWSPWTLALTGLGTLITAGYSLYMFLMTQRGPLPDHI 424
|
.
gi 2314329695 159 Q 159
Cdd:MTH00127 425 I 425
|
|
| ND5 |
MTH00063 |
NADH dehydrogenase subunit 5; Provisional |
10-150 |
8.19e-03 |
|
NADH dehydrogenase subunit 5; Provisional
Pssm-ID: 214414 [Multi-domain] Cd Length: 522 Bit Score: 37.94 E-value: 8.19e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2314329695 10 DIKRGLAYSTMSQLGYMMLALGMGSYRTALFHLITHAYSKALLFLGSGSIIhsmeavVGYSPEKSQNMVLMGGLRKHAPI 89
Cdd:MTH00063 243 DLKKIVALSTCNNISWCVLYLIYGDVILSLFQLVSHGVSKCLLFMLVGDVM------SGSGGSQSSNCVYSSILYGSWNL 316
|
90 100 110 120 130 140
....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2314329695 90 TQIAFLIgtLSLCGIPPLACFWSKDEILSD--SWLYSPIFAIIAWSTAGLTAFYMFRIYLLTF 150
Cdd:MTH00063 317 FYLFLLV--LGLSGVPFIGVFFSKHFLLSSfsSVVFNVSLLLVVILCVFLSYLYSFRLCLILF 377
|
|
| |
