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Conserved domains on  [gi|2315909631|gb|UYB94497|]
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NADH dehydrogenase subunit 2, partial (mitochondrion) [Symposiachrus browni]

Protein Classification

NADH dehydrogenase subunit 2( domain architecture ID 11475904)

NADH dehydrogenase subunit 2 is the core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 9.99e-165

NADH dehydrogenase subunit 2; Provisional


:

Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.99e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   1 AKVVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  81 DITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTIL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISIS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330
                  ....*....|....*...
gi 2315909631 321 VAILTTLSIVLLPISPVI 338
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMI 342
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 9.99e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.99e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   1 AKVVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  81 DITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTIL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISIS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330
                  ....*....|....*...
gi 2315909631 321 VAILTTLSIVLLPISPVI 338
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMI 342
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-277 8.51e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 8.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  10 ILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLF-SSMTNAWdTGQWDITQL-- 85
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  86 ---THPTSCLILTAAISM-------KLGLVPFHFWFPEVLQGTSLITGLLLSTAMK----FPPMTLLYMTSHSLNP---T 148
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 149 LLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWM--AIIIIYDPKLTLLNFYL--YTLMTAAVFLTFNSMK----- 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2315909631 220 VLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 2.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  19 SNHWVMAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  87 HPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSL-ITGLLLSTAMKFPP-----MTLLYMTSHSLNPTLLTTMAILSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIII----IYDPKLTLLNFYLYTLMTAAVFLTFNS-----MKVLKLSTLMTSWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2315909631 232 KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-271 2.27e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.55  E-value: 2.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  10 ILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  89 TSCLILT------------AAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMK---FPPMTLLYMTS----HSLNPTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 150 LTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLN--FYL--YTLMTAAVFLTFNSMKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2315909631 223 ---LSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
 
Name Accession Description Interval E-value
ND2 MTH00112
NADH dehydrogenase subunit 2; Provisional
 1-338 9.99e-165

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214423 [Multi-domain]  Cd Length: 346  Bit Score: 463.14  E-value: 9.99e-165
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   1 AKVVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW 80
Cdd:MTH00112    5 AKLIITTSLILGTIITISSNHWLMAWTGLEINTLAIIPLISKPHHPRATEAATKYFLTQAAASALILFSSTTNAWNTGQW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  81 DITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAAL 160
Cdd:MTH00112   85 DITQLTNPTSCTLLTLALAMKLGLAPFHFWLPEVLQGSTTTTALILSTWQKLAPLTLLLMTSNSLNPTLLLTLAILSTLI 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTIL 240
Cdd:MTH00112  165 GGWGGLNQTQLRKIMAFSSIAHLGWMIAIITYSPKLTLLTFYIYILMTTPMFLTLNTTSTKTLKDMMTSWTKSPTLNTTL 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 241 LLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISIS 320
Cdd:MTH00112  245 MLTLLSLAGLPPLTGFMPKWLILQELTKQNMTPTATIMAMLSLLSLFFYLRLTYISTITLPPNTTNMMMKWRTKPKKNTL 324

                         330
                  ....*....|....*...
gi 2315909631 321 VAILTTLSIVLLPISPVI 338
Cdd:MTH00112  325 TATLTTLSTLLLPLSPMI 342
ND2 MTH00070
NADH dehydrogenase subunit 2; Provisional
 4-338 8.17e-133

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177142 [Multi-domain]  Cd Length: 346  Bit Score: 381.96  E-value: 8.17e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   4 VFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDIT 83
Cdd:MTH00070    8 ILLSSLALGTMITLSSNHWFLAWMGLEINTLAIIPLMTKTHHPRATEAATKYFLTQASASALILFSSTINAWFTGEWTIM 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  84 QLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAALGGW 163
Cdd:MTH00070   88 NMQTPLPTIMLTIALMMKLGIAPFHFWLPEVLQGLDLTTGLILSTWQKLAPMALLIQISHLLNSNLLIIMGLLSTLIGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLT 243
Cdd:MTH00070  168 GGLNQTQLRKIMAYSSIAHLGWMIIILTFSPHLTLLNLLIYLIMTSSMFLMLMNLNSTNINKLSSSWSKNPTLTSMMMLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISISVAI 323
Cdd:MTH00070  248 LLSLGGLPPTTGFIPKWLILQELTKQNLTTLATLMALSALLSLFFYLRLSYAMSLTTSPNTSNSKLYWRFKNKTNNLLSL 327

                         330
                  ....*....|....*
gi 2315909631 324 LTTLSIVLLPISPVI 338
Cdd:MTH00070  328 TIILSLMLLPITPTI 342
ND2 MTH00135
NADH dehydrogenase subunit 2; Provisional
 4-338 2.10e-131

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177193 [Multi-domain]  Cd Length: 347  Bit Score: 378.38  E-value: 2.10e-131
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   4 VFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDIT 83
Cdd:MTH00135    8 ILLFSLGLGTTLTFASSHWLLAWMGLEINTLAIIPLMAQHHHPRAVEATTKYFLTQATAAAMILFASTTNAWLTGQWDIQ 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  84 QLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSlNPTLLTTMAILSAALGGW 163
Cdd:MTH00135   88 QMSHPLPTTMITLALALKIGLAPLHFWLPEVLQGLDLTTGLILSTWQKLAPFALILQIAPT-NPTLLITLGLTSTLVGGW 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLT 243
Cdd:MTH00135  167 GGLNQTQLRKILAYSSIAHLGWMILVLQFSPSLTLLALLTYIIMTSSAFLTFKLNSSTKINTLATSWTKAPALTALTPLI 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKP-ISISVA 322
Cdd:MTH00135  247 LLSLGGLPPLTGFMPKWLILQELTKQDLPLTATLAALSALLSLYFYLRLSYAMTLTISPNTLNGTTPWRLPSTqLTLPLA 326

                         330
                  ....*....|....*.
gi 2315909631 323 ILTTLSIVLLPISPVI 338
Cdd:MTH00135  327 ISTTATLMLLPLTPAI 342
ND2 MTH00105
NADH dehydrogenase subunit 2; Provisional
 6-339 1.98e-113

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177167 [Multi-domain]  Cd Length: 347  Bit Score: 332.97  E-value: 1.98e-113
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   6 ITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQL 85
Cdd:MTH00105   10 YLTLFLGTMITMISSHWLLAWIGLEMNMLAIIPILMKKHNPRSTEAATKYFLTQATASMLLMMAIIINLMYSGQWTITKL 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  86 THPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAALGGWVG 165
Cdd:MTH00105   90 TNPTASTLMTIALAMKLGLAPFHFWVPEVTQGIPLSSGMILLTWQKLAPLSILYQISPSINPNLLLTLAILSILIGGWGG 169

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 166 LNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLTLL 245
Cdd:MTH00105  170 LNQTQLRKILAYSSIAHMGWMTAILPYNPTLTLLNLLIYIIMTLTMFMLLMLNSSTTTLSLSHTWNKTPLMTSLILLTLL 249

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 246 SLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPhTTNHMK-QWH-TNKPISISVAI 323
Cdd:MTH00105  250 SLGGLPPLTGFMPKWMIIQELTKNNNIILPTLMAITALLNLYFYMRLIYSTSLTMFP-STNNMKmKWQfENTKPMTLLPT 328

                         330
                  ....*....|....*.
gi 2315909631 324 LTTLSIVLLPISPVIS 339
Cdd:MTH00105  329 LIILSTMLLPLTPMLS 344
ND2 MTH00200
NADH dehydrogenase subunit 2; Provisional
 4-340 2.50e-97

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177246 [Multi-domain]  Cd Length: 347  Bit Score: 291.87  E-value: 2.50e-97
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   4 VFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDIT 83
Cdd:MTH00200    8 LFILSLGLGTLLTFSSSHWFLIWLGLEINTLAIIPLLIKQHHPRKVEATTKYFIIQATASALLLFGGLLNAWTSGQWGIS 87

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  84 QLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAALGGW 163
Cdd:MTH00200   88 EMLGPLSETLILLALALKLGLAPGHFWVPDVLQGLSLQTGLILSTWQKLAPFALLIQLAPALNSNILLLLGLLSVLVGGW 167

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLT 243
Cdd:MTH00200  168 GGLNQTQLRKILAYSSIAHLGWLLSGLVYSPNLALLYLLLYVIITLTVFLLLNLLNSTKINSLSSSKTKNPILSMLLGLT 247

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 244 LLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISISVAI 323
Cdd:MTH00200  248 LLSLGGLPPLTGFFPKWLILQELSKQGLFIYATILLLGSLLSLFFYLRLSYLTLLTLSPNQINMMSSWRTKSNSNLLVGL 327

                         330
                  ....*....|....*..
gi 2315909631 324 LTTLSIVLLPISPVISS 340
Cdd:MTH00200  328 LLLLSILGLPLTPQLLF 344
ND2 MTH00041
NADH dehydrogenase subunit 2; Validated
 3-332 6.07e-78

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 177116 [Multi-domain]  Cd Length: 349  Bit Score: 242.53  E-value: 6.07e-78
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   3 VVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDI 82
Cdd:MTH00041    7 IFLITSIILGTIIVISSNHWFLIWLGLELNTLSIIPILSSNFSPRSVEATIKYFLVQAFSAAILLNGALIQAWLSGSWSI 86

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  83 TQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAALGG 162
Cdd:MTH00041   87 NGPLNTLSSIIITLALALKLGLAPCHFWFPDVLQGLPFLQGLIIATWQKIAPLILLISISNLLNSNILILCGILSVLVGG 166

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 163 WVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLL 242
Cdd:MTH00041  167 WGGLNQTQTRKILAFSSIAHLGWIIITSAYSPNASIIMFLIYIIINTSIFLIGNNFSLSTLSHLNKLSQLNPISAFLFIL 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 243 TLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVALSLLSLLGLFFYLRLAYCATITLPPHTTNHMKQWHTNKPISISVA 322
Cdd:MTH00041  247 SILSLGGLPPLTGFLNKFISLYCLIQNNSILISIILIIGSLLSLFFYLRISFNTSLTLFPQHSISLFSWRNSGNITVYGV 326

                         330
                  ....*....|
gi 2315909631 323 ILTTLSIVLL 332
Cdd:MTH00041  327 ILSILSSISI 336
ND2 MTH00160
NADH dehydrogenase subunit 2; Provisional
 2-271 6.04e-58

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214442 [Multi-domain]  Cd Length: 335  Bit Score: 190.42  E-value: 6.04e-58
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   2 KVVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWdtgqwd 81
Cdd:MTH00160    7 KLLFLSTLIMGTLISISSNSWFGAWMGLEINLLSFIPLISNKKNLMSSESSLKYFLIQALASIILLFSIILNML------ 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  82 ITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLymtSHSLNPTLLTTMAILSAALG 161
Cdd:MTH00160   81 NLMLFNNISSMLINSSLLLKLGAAPFHFWFPEVMEGLSWINCFILMTWQKIAPLILL---SYLINNNFIIIIIILSAIIG 157

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 162 GWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILL 241
Cdd:MTH00160  158 AIGGLNQTSLRKILAYSSINHLGWMLSSMMISENLWLIYFLIYSIISLSIILLFNKFNIFFLNQLFNSNNKSKKIKFLLF 237

                         250       260       270
                  ....*....|....*....|....*....|
gi 2315909631 242 LTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:MTH00160  238 LNLLSLGGLPPFLGFLPKWIIIQLLISNNM 267
ND2 MTH00144
NADH dehydrogenase subunit 2; Provisional
 1-271 1.12e-48

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214432 [Multi-domain]  Cd Length: 328  Bit Score: 166.21  E-value: 1.12e-48
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   1 AKVVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW 80
Cdd:MTH00144    5 SNLLFLFLMVMGTLLSLSSSHWLGVWVGLEINLIGFLPLLVYKKKSSESESVVKYFIIQSLGSSLLIFGSLIMYNLSFSW 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  81 DITqlthptscLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNP-TLLTTMAILSAA 159
Cdd:MTH00144   85 FSM--------SLLLLGLCLKLGLFPFHFWVPSVMAGLSWLSCFLLLTWQKVAPLFLLSNFLDLYWLaYLLCVISVLSAL 156

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 160 LGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFnSMKVLKLSTLMTSWTKTPSLSTI 239
Cdd:MTH00144  157 VGSIGGLNQTQVRALLAYSSISHTGWMLVAILHGSWLMWMYFLIYIVSSGFLFFSL-WSGDSGSMKDLGSLKPSYKTGLS 235

                         250       260       270
                  ....*....|....*....|....*....|..
gi 2315909631 240 LLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:MTH00144  236 IISLLLSLGGLPPFLGFCSKLLVLISSMESSP 267
ND2 MTH00011
NADH dehydrogenase subunit 2; Validated
 5-271 2.26e-47

NADH dehydrogenase subunit 2; Validated


Pssm-ID: 164587 [Multi-domain]  Cd Length: 330  Bit Score: 162.64  E-value: 2.26e-47
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   5 FITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSmtnawdTGQWDITQ 84
Cdd:MTH00011   11 FSSTMTLGTLMALSSNNWLFLWMGMELNLLSFVPLMTSSKMNQESEAAVKYFLAQALGSGLLLLGM------TMMWSFPS 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  85 LTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAILSAALGGWV 164
Cdd:MTH00011   85 LLKNITALMLLVSLMLKLGMAPCHFWFPSVMSSISWTLCLILSTWQKIAPLSILFFFTSHNILPMMTSMAAMSALAGGLG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 165 GLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLTL 244
Cdd:MTH00011  165 GMNQTQLRPLLAYSSIGHMGWMTMISVFSPSMAILYFMTYIIITTPLMLLFAYLNAFSTKFNSKISSMSQTTSMSLFIML 244

                         250       260
                  ....*....|....*....|....*..
gi 2315909631 245 LSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:MTH00011  245 LSLGGLPPFTGFMPKLMAIETLTSNSM 271
ND2 MTH00197
NADH dehydrogenase subunit 2; Provisional
 4-266 3.28e-40

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177244 [Multi-domain]  Cd Length: 323  Bit Score: 143.66  E-value: 3.28e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   4 VFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTgqwdit 83
Cdd:MTH00197    2 LFLFIIFGGVLFSLSSSNWFLVWIGMELNLIGFIPLLSQNKSITENEGAMKYFLFQEFGSALLLMGGSLSFSNL------ 75

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  84 qLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHslNPTLLTTMAILSAALGGW 163
Cdd:MTH00197   76 -YLSLLSVVLVILGLLLKLGAFPFHFWVPSVMESLSWFNCFLLATWQKLAPLLILAFNSS--SFMGLLICSVLSSLIGGI 152

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLT 243
Cdd:MTH00197  153 GGMNQSNIRQLLAYSSIGHTGWMLMSLVYSPSIFMLYYLIYFVIMFMLFLFLSKNNLSSLNQQYSNPESMSSNLVFLGLS 232

                         250       260
                  ....*....|....*....|...
gi 2315909631 244 LLSLAGLPPLTGFLPKWLIIQEL 266
Cdd:MTH00197  233 FLSLGGLPPLSGFFLKWLILTSL 255
NuoN COG1007
NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH: ...
 10-277 8.51e-26

NADH:ubiquinone oxidoreductase subunit 2 (chain N) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 2 (chain N) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440631 [Multi-domain]  Cd Length: 473  Bit Score: 107.12  E-value: 8.51e-26
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  10 ILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLF-SSMTNAWdTGQWDITQL-- 85
Cdd:COG1007   112 TLGMMLMASANDLLTLFLGLELLSLSLYVLVAfRRDDRRSSEAALKYFLLGALSSGFLLYgISLLYGA-TGSLNLAGIaa 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  86 ---THPTSCLILTAAISM-------KLGLVPFHFWFPEVLQGTSLITGLLLSTAMK----FPPMTLLYMTSHSLNP---T 148
Cdd:COG1007   191 alaAGGANSPLLLLGLVLvlaglafKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaafAALLRLLVEAFPGLAAdwqL 270

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 149 LLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWM--AIIIIYDPKLTLLNFYL--YTLMTAAVFLTFNSMK----- 219
Cdd:COG1007   271 LLAVLAVLSMTVGNLAALAQTNVKRMLAYSSIAHAGYLllGLAAGTPLGVSAALFYLlaYLFMNLGAFAVILLLSrkgge 350

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2315909631 220 VLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:COG1007   351 AEEIEDLAGLARRSPLLALAMTIFLLSLAGIPPTAGFFGKFYVFSAAVEAGLYWLAVI 408
Proton_antipo_M pfam00361
Proton-conducting membrane transporter; This is a family of membrane transporters that ...
 19-264 2.01e-24

Proton-conducting membrane transporter; This is a family of membrane transporters that inlcudes some 7 of potentially 14-16 TM regions. In many instances the family forms part of complex I that catalyzes the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane, and in this context is a combination predominantly of subunits 2, 4, 5, 14, L, M and N. In many bacterial species these proteins are probable stand-alone transporters not coupled with oxidoreduction. The family in total represents homologs across the phyla.


Pssm-ID: 425636 [Multi-domain]  Cd Length: 291  Bit Score: 100.85  E-value: 2.01e-24
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  19 SNHWVMAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQL-----------T 86
Cdd:pfam00361   1 ANDLLLMYLGWEAVLLPSYLLIgYWGKSPRSSEAGMKYFLLTLLGSSILLFGISLMYNYTGTLSFDELskaltgglnssG 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  87 HPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSL-ITGLLLSTAMKFPP-----MTLLYMTSHSLNPTLLTTMAILSAAL 160
Cdd:pfam00361  81 LLLLFLLILVGFLFKSAQVPFHTWLPDAYEGAPTpVSALLAATLVKAGGyglirRSLLYLPSSPFIQQILLILAIISMLL 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIII----IYDPKLTLLNFYLYTLMTAAVFLTFNS-----MKVLKLSTLMTSWT 231
Cdd:pfam00361 161 GSLAALVQTDIKRLLAYSSISHMGYMLIALgagtIYGIQAAIFHLLTHGLFSAGLFLCAGSviyrrVHTRNIRDYGGLAK 240

                         250       260       270
                  ....*....|....*....|....*....|...
gi 2315909631 232 KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:pfam00361 241 TMPILALVFLVAMLSLAGLPPTAGFLGKFLILA 273
ND2 MTH00196
NADH dehydrogenase subunit 2; Provisional
 9-263 1.04e-23

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214453 [Multi-domain]  Cd Length: 365  Bit Score: 100.10  E-value: 1.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   9 LILGSTITISSNHWVMAWAGLEINTLAVLPLI-SKSHHPRAIEAATKYFLVQATASALVLFS-------------SMTNA 74
Cdd:MTH00196    2 VALGILCLISSSNWLSVYLAIELQTLSLFILIaQNRGSGYSAEAGLKYFVLGALSSGLFLFGcallcgttgglhlSYINL 81

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  75 WDTGQWDITQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYmtSHSLNPTLLTTMA 154
Cdd:MTH00196   82 VLNSGQSFSSVSVPIGYLLIIVALLFKLSVAPFHMWAPDVYEGAPTKTTALLAIVPKLGIFSILV--SIGLNVNILLIGG 159

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 155 ILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIII----IYDPKLTLLNFYLYTLMTAAVF---LTFNSMK--VLKLST 225
Cdd:MTH00196  160 LFSLFVGAIGALNQTKIKRLLAYSGIGHMGFVLWGIeigsFESIQASLVYLFIYIIMSICVFsiiLALNVYKnlIIEFSG 239

                         250       260       270
                  ....*....|....*....|....*....|....*...
gi 2315909631 226 LMTswtKTPSLSTILLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00196  240 LSR---RLPILAITLALTFLSIAGIPPLVGFLGKWLIL 274
ND2 MTH00199
NADH dehydrogenase subunit 2; Provisional
 4-263 9.77e-22

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 177245 [Multi-domain]  Cd Length: 460  Bit Score: 95.47  E-value: 9.77e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   4 VFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDI 82
Cdd:MTH00199  101 ILILIVALGSLLLVSSINWLSIYLAIELQTLTLFILVAlKRDSAYSTEAGLKYFVLGAVSSGLFLFGCALLYGLTGETSI 180

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  83 ----TQLTHPTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTtmAILSA 158
Cdd:MTH00199  181 qginSILTGDVGKILITISLLFKLSAAPFHMWAPDVYEGAPTITTALLATVPKIGVFSILVQIGPVTNVVLIC--AVLSI 258

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 159 ALGGWVGLNQTQIRKIMAFSSISHLGW----MAIIIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLK--LSTLMTSWTK 232
Cdd:MTH00199  259 IYGAIGALNQTKIKRLLAYSGIGHMGFilfgVAIGSFESIQASLIYMIIYVIMSICSFSIILSLKLTKglIVEVSGLSRK 338

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2315909631 233 TPSLSTILLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00199  339 NPVIALTLALTFLSIAGIPPLAGFLSKWLIL 369
PRK05777 PRK05777
NADH-quinone oxidoreductase subunit NuoN;
10-277 4.10e-21

NADH-quinone oxidoreductase subunit NuoN;


Pssm-ID: 235603 [Multi-domain]  Cd Length: 476  Bit Score: 93.73  E-value: 4.10e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  10 ILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTHP 88
Cdd:PRK05777  113 LLGMMVMVSANDLLTLFLGLELLSLPLYALAAlRRDRRRSLEAAIKYFVLGALASGFLLYGMSLLYGATGSLSFAGIAKA 192

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  89 TS------------CLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMK---FPPMT-LLYMTSHSLNPT---L 149
Cdd:PRK05777  193 LAdgsgnsllllfgLVFLLVGLAFKLSAVPFHMWTPDVYEGAPTPVTAFLATAPKiaaFAVLLrLLVVAFGGLSEDwqqV 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 150 LTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTL--LNFYL--YTLMTAAVFLTFNSM-KVLKLS 224
Cdd:PRK05777  273 LAIIAIASMLVGNLAALSQTNIKRLLAYSSIAHAGYLLVGLAAGTAEGYsaVLFYLlaYLFMTLGAFGVISLLrRKGGEA 352

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 2315909631 225 TLMTSWT----KTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:PRK05777  353 ESISDFAglskRSPLLAAVMTIFMLSLAGIPPTAGFWGKFYVFEAAVEAGLWWLAVI 409
NDH_I_N TIGR01770
proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th ...
 10-271 2.27e-20

proton-translocating NADH-quinone oxidoreductase, chain N; This model describes the 14th (based on E. coli) structural gene, N, of bacterial and chloroplast energy-transducing NADH (or NADPH) dehydrogenases. This model does not describe any subunit of the mitochondrial complex I (for which the subunit composition is very different), nor NADH dehydrogenases that are not coupled to ion transport. The Enzyme Commission designation 1.6.5.3, for NADH dehydrogenase (ubiquinone), is applied broadly, perhaps unfortunately, even if the quinone is menaquinone (Thermus, Mycobacterium) or plastoquinone (chloroplast). For chloroplast members, the name NADH-plastoquinone oxidoreductase is used for the complex and this protein is designated as subunit 2 or B. This model also includes a subunit of a related complex in the archaeal methanogen, Methanosarcina mazei, in which F420H2 replaces NADH and 2-hydroxyphenazine replaces the quinone. [Energy metabolism, Electron transport]


Pssm-ID: 273795 [Multi-domain]  Cd Length: 468  Bit Score: 91.55  E-value: 2.27e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  10 ILGSTITISSNHWVMAWAGLEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTHP 88
Cdd:TIGR01770 112 LLGIFLLVSSNDLLSIYLGLELQSLCFYVLAGlKRKSRFSTEAGLKYFILGAFSSGLLLFGISLIYGFTGSLNFEDLLLF 191

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  89 TSCLILT------------AAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMK---FPPMTLLYMTS----HSLNPTL 149
Cdd:TIGR01770 192 LSNGMLNisllllgivlilVGLLFKLSAVPFHMWVPDVYEGAPTPVTAFFSIVPKiaiFAVFLRLFLYIlfgfSEAWQIF 271

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 150 LTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLN--FYL--YTLMTAAVFLTFNSMKVLK--- 222
Cdd:TIGR01770 272 LAIIAFLSMLIGNFGALAQKKVKRLLAYSSISHVGYILIGLLAGTLEGIKAvlFYIfiYALMSLGAFGVLSLLRSYKdew 351

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2315909631 223 ---LSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDM 271
Cdd:TIGR01770 352 ieyISDFAGLFKTNPILAILILIFMFSLAGIPPLAGFFGKFYVFFALLKSGL 403
ND2 MTH00198
NADH dehydrogenase subunit 2; Provisional
 11-263 1.33e-15

NADH dehydrogenase subunit 2; Provisional


Pssm-ID: 214454 [Multi-domain]  Cd Length: 607  Bit Score: 77.59  E-value: 1.33e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  11 LGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAI---------EAATKYFLVQATASALVLFSSMTNAWDTGQ-- 79
Cdd:MTH00198  199 LGGLLLIESANWLTIYLALEFQTLALFILAGEGSQPGSHfpspgntppESGLKYWILGAMSSGFYLFGCALYFGFTGNeg 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  80 --WDITQLTHPTS----------CLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLymTSHSLNP 147
Cdd:MTH00198  279 mlGTILSATLETTnielrqgslgYLFITVAILFKLAAAPFHMWTPDVYEGAPTPTTALIAIIPKFTVYILL--TSLVITS 356

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 148 TLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLY-------TLMTAAVFLTF----- 215
Cdd:MTH00198  357 KLLLSVAIISLVVGAFGALNQTRIKRLLAYSGIGHIGFILIGVSAGTYESLQASWTYavtylvsALASFTVICTLeefgt 436

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2315909631 216 -------------NSMKVLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:MTH00198  437 rtptsrqrdgsfgNYNLVRRLVDLTILSRGQPYIAFSLAIVFLSLAGIPPLLGFLGKWFIL 497
HyfB COG0651
Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy ...
 9-277 7.05e-15

Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit [Energy production and conversion, Inorganic ion transport and metabolism];


Pssm-ID: 440416 [Multi-domain]  Cd Length: 430  Bit Score: 75.18  E-value: 7.05e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   9 LILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTH- 87
Cdd:COG0651   116 LLAGMNGAFLTGDLFNLFVFFEVMLLASYGLVALGGTKEALRAGLKYLILNLVGSALFLLGVGLLYGATGTLNMADLAAr 195

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  88 ---------PTSCLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMK--------------FPPMTLLYMTshs 144
Cdd:COG0651   196 laeldpgllLAAFALLLVGFGIKAALFPLHFWLPDAYPAAPSPVSALLSGLLTkvgvyailrvltllFGADPALFLG--- 272

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 145 lnpTLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIiiiydpkltLLNFYLYTLMTAAVFLTFNSM------ 218
Cdd:COG0651   273 ---TLLLVLGLLTMLVGALGALAQRDLKRLLAYSSVSQIGYILL---------GLGLGTPLGLAGALFHLLNHAlakall 340

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 219 -----------KVLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:COG0651   341 flaagaieratGTRDLDKLGGLGKRMPLTAAAFLIGALALAGLPPLSGFVSKWLLLQAALEAGAWLLAAV 410
ndhB CHL00049
NADH dehydrogenase subunit 2
 3-259 3.52e-13

NADH dehydrogenase subunit 2


Pssm-ID: 176990 [Multi-domain]  Cd Length: 494  Bit Score: 70.03  E-value: 3.52e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   3 VVFITSLILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHP-RAIEAATKYFLVQATASALVLFS-SMTNAWDTGQW 80
Cdd:CHL00049  114 LLFVLTATLGGMFLCGANDLITIFVALECLSLCSYLLSGYTKKDvRSNEATMKYLLMGGASSSILVYGfSWLYGLSGGEI 193

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  81 DI---------TQLTHPTSCLI----LTAAISMKLGLVPFHFWFPEVLQG-----------TSLITGLLLSTAMkfppMT 136
Cdd:CHL00049  194 ELqeivnglinTQMYNSPGISIalifITVGIGFKLSLAPFHQWTPDVYEGsptpvvaflsvTSKVAASALATRI----FD 269

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 137 LLYMTSHSLNPTLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIII-------YDPKLTLLNFYLY-TLMT 208
Cdd:CHL00049  270 IPFYFSSNEWHLLLEILAILSMILGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIvgdsndgYASMITYMLFYIFmNLGT 349

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*.
gi 2315909631 209 AAVFLTFNsmkvLKLST-----LMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPK 259
Cdd:CHL00049  350 FACIVLFG----LRTGTdnirdYAGLYTKDPFLALSLALCLLSLGGIPPLAGFFGK 401
PRK02504 PRK02504
NAD(P)H-quinone oxidoreductase subunit N;
46-259 6.32e-10

NAD(P)H-quinone oxidoreductase subunit N;


Pssm-ID: 235044 [Multi-domain]  Cd Length: 513  Bit Score: 60.06  E-value: 6.32e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  46 PRAIEAATKYFLVQATASALVLF-SSMTNAWDTGQwdiTQL--------THPTSCLILT-----AAISMKLGLVPFHFWF 111
Cdd:PRK02504  157 PRSNEAALKYLLIGAASSAIFLYgSSLLYGLSGGS---TQLsaialaliTSPSLGLALAlvfviAGIAFKISAVPFHQWT 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 112 PEVLQGTSLITGLLLSTAMK---FPPMTLLYMTSHSLNPT----LLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLG 184
Cdd:PRK02504  234 PDVYEGSPTPVVAFLSVGSKaagFALAIRLLVTAFPSFDEqwklLFTALAILSMVLGNVVALAQTSMKRMLAYSSIGQAG 313

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 185 WMAI--IIIYDPKLTLLNFYL--YTLMTAAVF-------LTFNSMKVLKLSTLmtsWTKTPSLSTILLLTLLSLAGLPPL 253
Cdd:PRK02504  314 FVMIglVAGTEAGYASMVFYLlaYLFMNLGAFacvilfsLRTGTDQISDYAGL---YQKDPLLTLGLSLCLLSLGGIPPL 390


                  ....*.
gi 2315909631 254 TGFLPK 259
Cdd:PRK02504  391 AGFFGK 396
PRK08376 PRK08376
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-262 2.00e-09

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236252 [Multi-domain]  Cd Length: 521  Bit Score: 58.57  E-value: 2.00e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  29 LEINTLAVLPLIS-KSHHPRAIEAATKYFLVQATASALVLFS---------SMTNAWDTGQWDITQLTHPTSCL-ILTAA 97
Cdd:PRK08376  150 LEIMSIASYALVAfRNDTWEAIEAGIKYMFVGSLASSMVLLGiallygqygTLNMAYLAVKMSENPTVVAKIALaLFIAG 229

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  98 ISMKLGLVPFHFWFPEVL-QGTSLITGLLL--STAMKFPPMTLLY-MTSHSLNPT----LLTTMAILSAALGGWVGLNQT 169
Cdd:PRK08376  230 LAMKSGAVPVHMWLPDAYpAAPSSISAMLLviKQAGLYALARVLFsIYGPAINLAtvgwVIIILGCLTMFVGVAMAVVQK 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 170 QIRKIMAFSSISHLGWM------AIIIIYDPKLTLLNFylyTLMTAAVFLTFNS--MKVL---------------KLSTL 226
Cdd:PRK08376  310 DVKRLLAYHSVSQIGYMllglgvGLAALGDPAMASYGE---IALAGGIYHIVNHalYKALlfltagaviyetgtrNLNEL 386

                         250       260       270
                  ....*....|....*....|....*....|....*.
gi 2315909631 227 MTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK08376  387 GGLARTMPKTTIAFLIGAAAIVGLPPFNGFASKWLI 422
NuoM COG1008
NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH: ...
 45-188 5.63e-09

NADH:ubiquinone oxidoreductase subunit 4 (chain M) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 4 (chain M) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440632 [Multi-domain]  Cd Length: 488  Bit Score: 57.01  E-value: 5.63e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  45 HPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW--DITQLTH-----PTSCLILTA---AISMKLGLVPFHFWFPEV 114
Cdd:COG1008   156 GERRIYAAIKFFLYTLAGSLLMLVAILALYFLAGALtfDIAELAAaplplTAQLLLFLAffiAFAVKVPMFPFHTWLPDA 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 115 LQ-----GTSLITGLLLSTA----MKFPpMTLLYMTSHSLNPTLLTtMAILSAALGGWVGLNQTQIRKIMAFSSISHLGW 185
Cdd:COG1008   236 HVeaptaGSVLLAGVLLKMGgyglLRFA-LPLFPEASAYFAPLLAA-LGVIGIIYGALVALAQTDLKRLIAYSSVSHMGF 313


                  ...
gi 2315909631 186 MAI 188
Cdd:COG1008   314 VLL 316
NDH_I_M TIGR01972
proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th ...
 46-264 4.18e-07

proton-translocating NADH-quinone oxidoreductase, chain M; This model describes the 13th (based on E. coli) structural gene, M, of bacterial NADH dehydrogenase I, as well as chain 4 of the corresponding mitochondrial complex I and of the chloroplast NAD(P)H dehydrogenase complex. [Energy metabolism, Electron transport]


Pssm-ID: 273903 [Multi-domain]  Cd Length: 481  Bit Score: 51.48  E-value: 4.18e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  46 PRAIEAATKYFLVQATASALVLFSSMTNAWDTGQW----DITQLTHPTSC-----LILTAAISMKLGLVPFHFWFPEV-- 114
Cdd:TIGR01972 152 PNRIYAAMKFFLYTLAGSLLMLLAILGLYFLGGGTfdllELLNLPLPFGVqtwlfLAFFIAFAVKVPLFPLHTWLPDAhv 231

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 115 ---LQGTSLITGLLLSTA----MKFpPMTLLYMTSHSLNPtLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMA 187
Cdd:TIGR01972 232 eapTAGSVILAGVLLKMGtygfLRF-NLPLFPDASLYFAP-VLAALGVIAIIYGALIALAQTDIKRLIAYSSISHMGFVL 309

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 188 IIIIYDPKLTLLNFYLYT----LMTAAVFL----TFNSMKVLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPK 259
Cdd:TIGR01972 310 LGIFSFNELGISGAVFQMishgLITAALFLlvgvLYERAHTRDIAKYGGLANKMPVLAAFFMLFAMASLGLPGTSGFVGE 389


                  ....*
gi 2315909631 260 WLIIQ 264
Cdd:TIGR01972 390 FLILL 394
PRK08668 PRK08668
NADH dehydrogenase subunit M; Validated
 30-275 5.33e-07

NADH dehydrogenase subunit M; Validated


Pssm-ID: 236332 [Multi-domain]  Cd Length: 610  Bit Score: 51.15  E-value: 5.33e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  30 EINTLAVLPLISKSHHpRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDIT-------QLTHPTSCLI----LTAAI 98
Cdd:PRK08668  128 EIMTFSSFMMVPMGKK-ESRKASLKYFVLSAIGAYAMLYAIFLIYAKTGTFDFAdisqgliNDTSTGFALIvflfLLAFG 206

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  99 SMKLGLVPFHFWFPE-----------VLQGTSLITG---LLLSTAMkFPPMTLLY----MTSHSLNPTLLTTMAILSAAL 160
Cdd:PRK08668  207 VAKAGIFPLHVWAPDayseapqsfsaVLSGQLSKLGaygFLLVLYV-LPGTKLFSefgtYRGVPLFNYILAWLGNISIIV 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAI-IIIYDPKLT---LLNFYLYTLMTAAVFLTFNSM----KVLKLSTLMTSWTK 232
Cdd:PRK08668  286 GTLMAILQEDIKKLIAYSSVANGGYILVgLGLGTSLGFaggLFHVFNHALFKGLFFLIFAAViyrtGTTKISEMGGLIEK 365

                         250       260       270       280
                  ....*....|....*....|....*....|....*....|...
gi 2315909631 233 TPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTA 275
Cdd:PRK08668  366 MPFTFAMYLVAIISLAGIPPMSGFASKWLIFEALISKGMPITA 408
PRK12644 PRK12644
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-259 1.64e-06

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237154 [Multi-domain]  Cd Length: 965  Bit Score: 49.92  E-value: 1.64e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  92 LILTAAISmKLGLVPFHFWFPEVLQGTSLITGLLLSTAM---------KFPPMtllYMTSHSLNPTLLtTMAILSAALGG 162
Cdd:PRK12644  208 LILVGALS-KSAIVPFHFWLPGAMAAPTPVSAYLHAAAMvkagiylvaRLAPG---FADVPVWRPTVL-VLGLATMLLGG 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 163 WVGLNQTQIRKIMAFSSISHLGWMAIII-IYDPKLTLLNFYL---YTLMTAAVFLTF-------NSMKVLKLSTLmtsWT 231
Cdd:PRK12644  283 WRALRQHDLKLILAYGTVSQLGFLTVLVgIGTRDAALAGLAMllaHALFKAALFLVVgiidhstGTRDIRKLSGL---GR 359

                         170       180
                  ....*....|....*....|....*...
gi 2315909631 232 KTPSLSTILLLTLLSLAGLPPLTGFLPK 259
Cdd:PRK12644  360 RQPVLAVVAALAAASMAGLPPLLGFVAK 387
PRK08375 PRK08375
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-277 2.88e-06

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 236251 [Multi-domain]  Cd Length: 487  Bit Score: 48.72  E-value: 2.88e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  29 LEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFS-SMTNAwDTGQWDITQLTH--PTSCLILTA------AIS 99
Cdd:PRK08375  135 LEIMSLSSYALVAMGGDRRALAAARKYLIVGLIGSTFLLIGvGLLYG-VTGTLNMADLAGalAENPTVVTAfgfvllALA 213

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 100 MKLGLVPFHFWFPEVLQGTSLITGLLLS---TAMKFPPMTLLYMT-------SHSLNPTLLTTMAILSAALGGWVGLNQT 169
Cdd:PRK08375  214 LKAAVFPLHTWLPRAYPAAPPVVTALLSglvTKVAVYALIRIYFTvfggdfrFALGLGWLLAVLALLSMLVGSLAALGQD 293

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 170 QIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYT-----------LMTAAVFLTFNSMKVLKLSTLMTswtKTPSLST 238
Cdd:PRK08375  294 DVKRVLAYSTVSQMGYILLGLALLTPLALAAGLLHLlhhalmkgalfLAAGAIEVTYGTRRLSELSGLGR---RMPLTAA 370

                         250       260       270
                  ....*....|....*....|....*....|....*....
gi 2315909631 239 ILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:PRK08375  371 AFAVASLSLIGVPPTSGFVSKWYLVVGAVEAGQWLVLAV 409
PRK08676 PRK08676
hydrogenase membrane subunit; Validated
 9-211 4.51e-06

hydrogenase membrane subunit; Validated


Pssm-ID: 181537 [Multi-domain]  Cd Length: 485  Bit Score: 48.21  E-value: 4.51e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   9 LILGSTITISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATA------SALVLFSSMTNAWDTGQWDI 82
Cdd:PRK08676  111 LLSVITFAFFSDNLALFWIFAELTTVFSAMLIAILSARENIDAALKYIFIASTAmifafiGLIFLFSLTRQALGTGTLNW 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  83 TQLTHPTSCL---ILTAAISM-------KLGLVPFHFWFPEV-LQGTSLITGLLLSTAMKFPPMTLLYMTS-------HS 144
Cdd:PRK08676  191 TELAAHASLLspsVLGASFLFifigflaKSGLVPFHTWLPAAyAKAPSVVSALLSGTVLNIGIYGILRLSAllrqsgaAE 270

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2315909631 145 LNPTLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYTLMTAAV 211
Cdd:PRK08676  271 QFSNVLIGLGIFSIAVAAFSMLSQRNLKKLIAFSSIEHMGLMLLGIGIGTPLALFWMLFHMLAHSLV 337
NADH_dehy_S2_C pfam06444
NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region ...
 291-336 7.01e-06

NADH dehydrogenase subunit 2 C-terminus; This family consists of the C-terminal region specific to the eukaryotic NADH dehydrogenase subunit 2 protein and is found in conjunction with pfam00361.


Pssm-ID: 461914 [Multi-domain]  Cd Length: 51  Bit Score: 42.63  E-value: 7.01e-06
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 2315909631 291 RLAYCATITLPPHTTNHMKQWHTNKP-ISISVAILTTLSIVLLPISP 336
Cdd:pfam06444   5 RLSYSTTLTLFPNTNNSKMKWRFNSTkNTLLLPTLTTLSILLLPLTP 51
ND5 MTH00032
NADH dehydrogenase subunit 5; Provisional
 99-267 1.03e-05

NADH dehydrogenase subunit 5; Provisional


Pssm-ID: 214407 [Multi-domain]  Cd Length: 669  Bit Score: 47.26  E-value: 1.03e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  99 SMKLGLvpfHFWFPEVLQGTSLITGLLLSTAM----------KFP-----PMTLLymtshslnptLLTTMAILSAALGGW 163
Cdd:MTH00032  239 SAQLGL---HTWLPDAMEGPTPVSALIHAATMvtagvflmirSFPlfekaPLTLL----------IITIFGALTAFFAAT 305

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYL--YTLMTAAVFL---------TFNSMKVLKLSTLMTSwtk 232
Cdd:MTH00032  306 VGLVQNDLKKVIAYSTCSQLGYMVLIIGIEGSHNVGLFHLvnHAFFKALLFLsagsvihstTVDEQDMRKMGGLIHS--- 382

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2315909631 233 TPSLSTILLLTLLSLAGLPPLTGFLPKWLIIqELT 267
Cdd:MTH00032  383 IPFTYTMMLIGSFSIMGLPYLTGFYSKDLIL-ELT 416
PRK05846 PRK05846
NADH:ubiquinone oxidoreductase subunit M; Reviewed
 46-190 1.99e-05

NADH:ubiquinone oxidoreductase subunit M; Reviewed


Pssm-ID: 235622 [Multi-domain]  Cd Length: 497  Bit Score: 45.96  E-value: 1.99e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  46 PRAIEAATKYFLVQATASALVLFSSMT----NAWDTGQWDITQLTH---PTSCLILT-----AAISMKLGLVPFHFWFPE 113
Cdd:PRK05846  157 KNRIYAATKFFLYTLLGSLLMLVAIIYlvvvYYNATGTFDIADLLNlplPPGVQYWLflaffIAFAVKMPMFPLHTWLPD 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 114 VLQ-----GTSLITGLLLSTA----MKFPpMTLLYMTSHSLNPtLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLG 184
Cdd:PRK05846  237 AHVqaptaGSVLLAGILLKMGayglLRFS-LPLFPDASHEFAP-IIITLGVIAIIYGALVALAQTDIKKLIAYSSISHMG 314


                  ....*.
gi 2315909631 185 WMAIII 190
Cdd:PRK05846  315 FVTLGI 320
PRK07234 PRK07234
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-267 2.92e-05

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235978 [Multi-domain]  Cd Length: 470  Bit Score: 45.71  E-value: 2.92e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  29 LEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTH--PTSCLILTAAISMKLGLVP 106
Cdd:PRK07234  123 LEVLSIATFLLVAYPRTDRAIWVGLRYLFYSNVAMLFYLIGAVLVYQANGTFAFSGLATadPEAFALIALGLLVKGGIFV 202

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 107 FHFWFPEVLQGTSLITGLLLSTAMK----FPPMTLLYMTSHSLNPtlLTTMAILSAALGGWVGLNQTQIRKIMAFSSISH 182
Cdd:PRK07234  203 SGLWLPLTHSEAEPPVSALLSGVVVkagvFPLVRCALDVPGLDLI--VRIFGVGTALLGVLFALLEKDLKRMLAFSTISQ 280

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 183 LGWmaiiIIYDPKLTLLNFYLYTLMTAAVFLTFNSMKVLKLSTLMTSWTKTPSLSTILLLTLLSlAGLPPLTGFLPKWLI 262
Cdd:PRK07234  281 LGF----ILAAPLVGGLYALAHGLVKSTLFLCAGALPSRNFTELISQMLGIGKWIPLTMASFSI-AGFPLLAGFVSKVLT 355


                  ....*
gi 2315909631 263 IQELT 267
Cdd:PRK07234  356 LKNLL 360
PRK06458 PRK06458
hydrogenase 4 subunit F; Validated
 16-188 3.54e-05

hydrogenase 4 subunit F; Validated


Pssm-ID: 235805 [Multi-domain]  Cd Length: 490  Bit Score: 45.31  E-value: 3.54e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  16 TISSNHWVMAWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSS----------MTNAWDTGQWD--IT 83
Cdd:PRK06458  124 ALTSNNLGLMWVAIEATTLSSALLVGIYRTRASLEAAWKYIIICSVGVAFALFGTilvyanaatvMGDGEMAILWTelLK 203

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  84 QLTHPTSCLILTAAISM------KLGLVPFHFWFP----EVLQGTS-LITGLLLSTA----MKFPPMTLLYMTSHSLNPt 148
Cdd:PRK06458  204 HASLLDPTLMKLAFVFLligfgtKVGLFPMHAWLPdahsEAPSPVSaLLSGVLLNVAlyavLRYYILIDAAIGSDFPGR- 282

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2315909631 149 LLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAI 188
Cdd:PRK06458  283 LLLIFGLLSVLVAAFFLLRQRDIKRLFAYSSIEHMGLIAF 322
PRK12650 PRK12650
DUF4040 family protein;
83-259 4.39e-05

DUF4040 family protein;


Pssm-ID: 237158 [Multi-domain]  Cd Length: 962  Bit Score: 45.42  E-value: 4.39e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  83 TQLTHPTSCLILTAAISmKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTS--HSLNPT---LLTTMAILS 157
Cdd:PRK12650  204 PGLTTVVAVLIAVAAFT-KSAQFPFHFWLPEAMAAITPVSAFLHAAAVVKAGIYLLLRFSpvFHDVAVwnwLLIIVGMIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 158 AALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLYT----LMTAAVFLTFNSMK----VLKLSTLMTS 229
Cdd:PRK12650  283 ALMGAVFAVQKTDLKKLTAYSTVSQLGWIVATIGVGTPFALTAAVVHTlahaLFKSSLFMLIGVVDhqagTRDIRRLGSL 362

                         170       180       190
                  ....*....|....*....|....*....|
gi 2315909631 230 WTKTPSLSTILLLTLLSLAGLPPLTGFLPK 259
Cdd:PRK12650  363 WRRMPFTFVSVTIAALSMAAVPPLFGFVSK 392
NuoL COG1009
Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ ...
 19-186 7.80e-05

Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit [Energy production and conversion]; Membrane H+-translocase/NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440633 [Multi-domain]  Cd Length: 608  Bit Score: 44.37  E-value: 7.80e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  19 SNHWVMAWAGLEINTLAVLPLISKSHH-PRAIEAATKYFLVQAT-----ASALVLFSSMTNAWDTG---QWDITQLTHPT 89
Cdd:COG1009   130 SDNLLLLFVFWELVGLCSYLLIGFWYEkPSARRAARKAFLVTRVgdlglLLGILLLGAIAGTLNFSellAAAPTILSSPL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  90 ----SCLILTAAISmKLGLVPFHFWFPEVLQGTSLITGLLLSTAM---------KFPPMTllymtshSLNPTLLTTMAIL 156
Cdd:COG1009   210 ltliLLLLLLGAFG-KSAQFPLHFWLPDAMEGPTPVSALLHAATMvkagvyllaRLSPLF-------ALSPVWLTVVAII 281

                         170       180       190
                  ....*....|....*....|....*....|...
gi 2315909631 157 SAA---LGGWVGLNQTQIRKIMAFSSISHLGWM 186
Cdd:COG1009   282 GAItalFAALIALAQTDIKRVLAYSTVSQLGYM 314
PRK12647 PRK12647
putative monovalent cation/H+ antiporter subunit A; Reviewed
 92-277 9.58e-05

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 237156 [Multi-domain]  Cd Length: 761  Bit Score: 44.14  E-value: 9.58e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  92 LILTAAISmKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPT-----LLTTMAILSAALGGWVGL 166
Cdd:PRK12647  200 LVLGGAFT-KSAQFPFHFWLPNAMEAPTPVSAYLHSATMVKAGIYLLARLNPVLGGTplwqtILPLFGGLTMLTGALLAV 278

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 167 NQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLY----TLMTAAVFLTFNSMK-------VLKLSTLmtsWTKTPS 235
Cdd:PRK12647  279 RQTDLKLILAYSTVSALGTLVMLLGLGSELAIKAAVLFlvahSLYKGALFMVAGIIDhetgtrdITKLGGL---RRAMPI 355

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|..
gi 2315909631 236 LSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAVA 277
Cdd:PRK12647  356 TAAAALLAALSMAGLPPLFGFLAKELIYEALLEAPLWSLILT 397
PRK12663 PRK12663
Na+/H+ antiporter subunit D;
88-264 1.35e-04

Na+/H+ antiporter subunit D;


Pssm-ID: 237163 [Multi-domain]  Cd Length: 497  Bit Score: 43.40  E-value: 1.35e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  88 PTSCLILTAAISMKLGLVPFhFWFP--------EVlqgTSLITGLLLSTAMK--FPPMTLLYMTSHSLNPTLLTTMAILS 157
Cdd:PRK12663  207 TTIALLFLLAFGMKAALFPF-MWLPaayhtpntEV---AALFAALLTKVGIYalIRVFTLLFPQERELLHPLLATMAAIT 282

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 158 AALGGWVGLNQTQIRKIMAFSSISHLGWM-AIIIIYDPK-LTLLNFYLYTLMT--AAVFLTFNSMKVL----KLSTLMTS 229
Cdd:PRK12663  283 MVIGALGALAYKDIRRIAGYQVISSIGFIlLGLALGTPAgINGAIFYLVHDMVvkTALFLIAGSLVRLtgyrSLQYLGGL 362

                         170       180       190
                  ....*....|....*....|....*....|....*
gi 2315909631 230 WTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK12663  363 YRKEPLFGALFLILIFAIGGLPPFSGFWGKVLLVQ 397
ND5 MTH00020
NADH dehydrogenase subunit 5; Reviewed
 91-264 2.42e-04

NADH dehydrogenase subunit 5; Reviewed


Pssm-ID: 214400 [Multi-domain]  Cd Length: 610  Bit Score: 42.76  E-value: 2.42e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  91 CLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTMAI-----LSAALGGWVG 165
Cdd:MTH00020  213 CLFLFIGAVGKSAQLGLHTWLPDAMEGPTPVSALIHAATMVTAGVFLLIRSSPLFEQAPLALIIVtivgsLTVFFAATVG 292

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 166 LNQTQIRKIMAFSSISHLGWMAIII-IYDPKLTLLNFYLYTLMTAAVFLTFNSM--------KVLKLSTLMTSwtkTPSL 236
Cdd:MTH00020  293 LVQNDLKKVIAYSTCSQLGYMVVACgLSHYSISLFHLMNHAFFKALLFLSAGSVihalsdeqDMRKMGGLISF---LPLT 369

                         170       180
                  ....*....|....*....|....*...
gi 2315909631 237 STILLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:MTH00020  370 YIFFLIGSLSLMGFPYLTGFYSKDLILE 397
PRK06473 PRK06473
NADH-quinone oxidoreductase subunit M;
51-262 3.57e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 235810 [Multi-domain]  Cd Length: 500  Bit Score: 42.38  E-value: 3.57e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  51 AATKYFLVQATASALVLFSSMTNAWDTG-------QWDITQLTHPTSCLILTA---AISMKLGLVPFHFWFPEV-LQGTS 119
Cdd:PRK06473  158 AATKFLLYTAISGILILVSFLGLVWLSGassfdyePLRSHTLPLSTQLLLLAPilvGFGIKIPLVPFHTWLPDAhVEAST 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 120 LITGLLLSTAMKFPPMTLL------YMTSHSLNPTLLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIYD 193
Cdd:PRK06473  238 PVSVLLAGVLLKLGTYGLLrfgvglFPEAWVYLAPWLATWAVVSVLYGASCAIAQKDMKKMVAYSSIGHMGYILLAAAAA 317

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 194 PKLTLLNFYL----YTLMTAAVFLTF-------NSMKVLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLI 262
Cdd:PRK06473  318 TPLSILAAVFqmisHGLISALLFLLVgvvykktGSRDVDVLRGLLNPERGLPITGSLMILGVMASAGIPGMVGFIAEFLV 397
PRK07363 PRK07363
NADH-quinone oxidoreductase subunit M;
51-264 6.17e-04

NADH-quinone oxidoreductase subunit M;


Pssm-ID: 180945 [Multi-domain]  Cd Length: 501  Bit Score: 41.62  E-value: 6.17e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  51 AATKYFLVQATASALVL-------FSSMTNAWDTGQWDITQLTHPTSCLILTAAI---SMKLGLVPFHFWFPEVLQGTSL 120
Cdd:PRK07363  158 ASIKFLIYTAVSGLLVLaaflgivWLSGSTSFDYDAISTQNLSLNTQLILLTGLLlgfGIKIPLVPLHTWLPDAYTEASP 237

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 121 ITGLLLSTAM-KFPPMTLLYM-------TSHSLNPTLLTTMAIlSAALGGWVGLNQTQIRKIMAFSSISHLGWMAIIIIY 192
Cdd:PRK07363  238 AVAILLGGVLaKLGTYGLLRFglqlfpqTWSLVAPGLAIIGTI-SVIYGALSAIAQKDIKRMVAYSSIGHMGYILVAAAA 316

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 193 DPKLTLLN---------------FYLYTLMTAAVfltfNSMKVLKLSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFL 257
Cdd:PRK07363  317 GTQLSLLGavaqmishglilallFHLVGIVERKV----GTRDLDVLNGLMNPIRGLPLTSALLVLAGMASAGIPGLVGFV 392


                  ....*..
gi 2315909631 258 PKWLIIQ 264
Cdd:PRK07363  393 AEFIVFQ 399
PRK07376 PRK07376
NADH-quinone oxidoreductase subunit L;
48-186 1.44e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236005 [Multi-domain]  Cd Length: 673  Bit Score: 40.39  E-value: 1.44e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  48 AIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTHPTSCLILTAAISMKLGLV----------------PFHFWF 111
Cdd:PRK07376  171 AADAAQKAFVVNRVGDFGLLLGILGLFWATGSFDFDGIADRLSELVSSGAVSGWLALLlcilvflgpmaksaqfPLHVWL 250

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 112 PEVLQGTSLITGLLLSTAMKFPPMTLL--YMTSHSLNPTLLTTMAI---LSAALGGWVGLNQTQIRKIMAFSSISHLGWM 186
Cdd:PRK07376  251 PDAMEGPTPISALIHAATMVAAGVFLVarMYPVFEQFPAVMTVIAWtgaITAFLGASIALTQNDIKKGLAYSTISQLGYM 330
ND4 MTH00226
NADH dehydrogenase subunit 4; Provisional
 97-191 1.96e-03

NADH dehydrogenase subunit 4; Provisional


Pssm-ID: 214466 [Multi-domain]  Cd Length: 505  Bit Score: 39.90  E-value: 1.96e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  97 AISMKLGLVPFHFWFPEV-----LQGTSLITGLLLSTA------MKFPpmtLLYMTSHSLNPTLLtTMAILSAALGGWVG 165
Cdd:MTH00226  239 AMAVKIPIFPFHIWLPKAhveapVAGSVLLAGILLKLGgyglvrLSWP---ILPLGAQNLAPAVI-AMGIVGIVYGSFAT 314

                          90       100
                  ....*....|....*....|....*.
gi 2315909631 166 LNQTQIRKIMAFSSISHLGWMAIIII 191
Cdd:MTH00226  315 CRQIDVKRLVAYSSVAHMGLVSITLV 340
PRK12649 PRK12649
putative monovalent cation/H+ antiporter subunit A; Reviewed
 44-259 2.65e-03

putative monovalent cation/H+ antiporter subunit A; Reviewed


Pssm-ID: 183649 [Multi-domain]  Cd Length: 789  Bit Score: 39.81  E-value: 2.65e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  44 HHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQLTHPTS---------------CLILTAAISmKLGLVPFH 108
Cdd:PRK12649  156 HRPESVYGATKSLLITAGGGLFMFAGFLLLHVITGTYDIATILQDSElienikghplflitlILIFIGAAA-KSAQGPFY 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 109 FWFPEVLQGTSLITGLLLSTAMKFPPMTLLYMTSHSLNPT-----LLTTMAILSAALGGWVGLNQTQIRKIMAFSSISHL 183
Cdd:PRK12649  235 IWLPNAMEAPTPVSAFLHSATMVKAGVYLVARIHPIFSGTeawfiLVSGTGMITMVLAGFLAFRQTDIKAILAYSTISQL 314

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 184 GWMAIIIIY----DPKLTLL--NFYL--YTLMTAAVFLTFN-------SMKVLKLSTLMTswtKTPSLSTILLLTLLSLA 248
Cdd:PRK12649  315 AYLMTMYGYttyhEPGLGVAaaTFHLlnHATFKACLFLVAGivaheaaTRDIRKLGGLRK---EMPITFIVASIAALAMA 391

                         250
                  ....*....|.
gi 2315909631 249 GLPPLTGFLPK 259
Cdd:PRK12649  392 GIPPLNGFLSK 402
PRK06277 PRK06277
energy conserving hydrogenase EhbF;
30-264 3.37e-03

energy conserving hydrogenase EhbF;


Pssm-ID: 235767 [Multi-domain]  Cd Length: 478  Bit Score: 39.24  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  30 EINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQ-----LTHPTSCLILTAAISMKLGL 104
Cdd:PRK06277  130 EIAAIVQVGLVIASGTEEAYKAALKYMILGNVAGSILLLGIGFLLASTGTLNITDihnalLVNPTSPVIYGGLLLLIFGL 209

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 105 V------PFHFWFPEV-----------LQGTSLITGLLLSTAMkfppMTLLYMTSH-SLNPTLLTTMAILSAALGGWVGL 166
Cdd:PRK06277  210 LygsglpPFHTIKSDIyakakpfgsalLQTFSKFVLVALMLVI----FKLFGGLSYfPSAQGVLIALSVLAMVFGVVMAL 285

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 167 NQTQIRKIMAFSSISHLGWMAIIIIYDPKLTL-------LNFYLYTlmtAAVFLTFNSM----KVLKLSTLMTSWTKTPS 235
Cdd:PRK06277  286 LQTDYKRLLAYHAISQGGYVAAGLALGTPLGIvagifhaINHVIYK---SALFLGAGIVsyrtKTSNLRKLGGLLPVMPV 362

                         250       260
                  ....*....|....*....|....*....
gi 2315909631 236 LSTILLLTLLSLAGLPPLTGFLPKWLIIQ 264
Cdd:PRK06277  363 VAFMVLCAKLAISGVPPFNGFQSKLMLAQ 391
PRK08168 PRK08168
NADH-quinone oxidoreductase subunit L;
14-186 3.37e-03

NADH-quinone oxidoreductase subunit L;


Pssm-ID: 236171 [Multi-domain]  Cd Length: 516  Bit Score: 39.30  E-value: 3.37e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  14 TITISSNHWVM---AWA--GLEINTLavlpLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAWDTGQWDITQL--- 85
Cdd:PRK08168  114 HLLVLSDHLLVliaAWAaiSLALHRL----LCFYPDRPFARLAAHKKFIADRLAELLLLAAAALAYLEVGSLSLSALwah 189

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  86 --THPTS------CLILTAAISMKLGLVPFHFWFPEVLQGTSLITGLLLS--------TAMKFPPMTLLYMTSHslnpTL 149
Cdd:PRK08168  190 laAQGASpslqaaALLLVLAVILKTAQLPVHGWLIQVMEAPTPVSALLHAgvvnlggfVLIRFAPLLEQAPPAR----WL 265

                         170       180       190
                  ....*....|....*....|....*....|....*..
gi 2315909631 150 LTTMAILSAALGGWVGLNQTQIRKIMAFSSISHLGWM 186
Cdd:PRK08168  266 LVLVGLATAVLAGLVMLTRISIKVRLAWSTVAQMGFM 302
PRK06589 PRK06589
putative monovalent cation/H+ antiporter subunit D; Reviewed
 5-276 4.94e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 235835 [Multi-domain]  Cd Length: 489  Bit Score: 38.64  E-value: 4.94e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631   5 FITSLILGSTITISSNHWVMaWAGLEINTLAVLPLISKSHHPRAIEAATKYFLVqATASALVLF--SSMTNAWDTGQWDI 82
Cdd:PRK06589  122 FNLTILIGVLIALSSDLFTM-FVCYELLTISTAFLIGHTRNNISLSGGYKYLKI-LMISALLLFlpAVILIYTKTGNLDF 199

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  83 TQ---LTHPTSCLILTAAISM--KLGLVPFHFWFPEVLQG----TSLITGLLLSTAMKFPPMTLLYMTSHSLNPTLLTTM 153
Cdd:PRK06589  200 VSgglFSKNQSIILLLMFIYGiaKTAIFPVHSWLPAAMVAhypvSALLHAVIVVKTGLFCIYKILLYIFGLSYLQRIFAE 279

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 154 -------AILSAALGGWVGLNQTQIRKIMAFSSISHLGW--MAIIIIYDPKLTLLNFYLYT--LMTAAVFLTFNSMKVLK 222
Cdd:PRK06589  280 fnwlifiPIVSIFYSSLKALKTDNIKKILAYSTISQLSLalLSAFILTPKALGAAILHLVShsFAKICLFYSMGSIYSLK 359

                         250       260       270       280       290
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 2315909631 223 ----LSTLMTSWTKTPSLSTILLLTLLSLAGLPPLTGFLPKWLIIQELTKQDMAPTAV 276
Cdd:PRK06589  360 kedqVDKLHGTSKSFPLISFIISISSLSLIGIPIFSGFISKFLILLAASEQNQPWLSI 417
PRK12561 PRK12561
NAD(P)H-quinone oxidoreductase subunit 4; Provisional
 24-190 5.61e-03

NAD(P)H-quinone oxidoreductase subunit 4; Provisional


Pssm-ID: 237137 [Multi-domain]  Cd Length: 504  Bit Score: 38.47  E-value: 5.61e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  24 MAWaglEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFSSMTNAW--DTGQWDITQLTH---PTSCLILT--- 95
Cdd:PRK12561  114 LMW---ELELVPVYLLISIWGGQKRLYAATKFILYTALASIFILVAGLALALsgDTFTFDLAELGAksyPLALELLLyag 190

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  96 --AAISMKLGLVPFHFWFPE-----------VLQGTSLITG--LLLSTAMKFPPMTLLYMTShslnptLLTTMAILSAAL 160
Cdd:PRK12561  191 flIAFGVKLPIFPLHTWLPDahgeasapvsmILAGVLLKMGgyALIRFNVQMLPDAHVYFAP------ALAILGVVNIIY 264

                         170       180       190
                  ....*....|....*....|....*....|
gi 2315909631 161 GGWVGLNQTQIRKIMAFSSISHLGWMAIII 190
Cdd:PRK12561  265 GALNAFAQDNVKRRLAYSSVSHMGFVLLGI 294
PRK12662 PRK12662
putative monovalent cation/H+ antiporter subunit D; Reviewed
 29-263 7.13e-03

putative monovalent cation/H+ antiporter subunit D; Reviewed


Pssm-ID: 183662 [Multi-domain]  Cd Length: 492  Bit Score: 38.18  E-value: 7.13e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  29 LEINTLAVLPLISKSHHPRAIEAATKYFLVQATASALVLFS-----SMTNAWDTGqwDITQLTHP--------TSCLILT 95
Cdd:PRK12662  139 LEISSISSYVLVAMGRDKKALVAAFEYLIIGTIGATFYLIGigflyAITGTLNMG--DMFLIIQDlptnraiqIGVLFIM 216

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631  96 AAISMKLGLVPFHFWFPEVL-QGTSLITGLLLSTAMKFPPMTL-----------LYMTSHSLNpTLLTTMAILSAALGGW 163
Cdd:PRK12662  217 VGLFIKAALFPFHKWLIQAYsEAPSFISVFFSGTSTKVMIYLIirivydvfkanFVFTTLPFN-NVFMILAALAIVFGSV 295

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2315909631 164 VGLNQTQIRKIMAFSSISHLGWMAIIIIYDPKLTLLNFYLY----TLMTAAVFLT-------FNSMKVLKLSTLmtsWTK 232
Cdd:PRK12662  296 LAILSKDIKRIFAYSSISHIGYIILAVSLNTYYGLAAAVAYivnhSIVKSALFMVsgsisyhFGTTKLEDCLNL---WKS 372

                         250       260       270
                  ....*....|....*....|....*....|.
gi 2315909631 233 TPSLSTILLLTLLSLAGLPPLTGFLPKWLII 263
Cdd:PRK12662  373 MPKITLAFVLLSLSLIGMPPTSGFVAKWYIL 403
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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