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Conserved domains on  [gi|2325508966|gb|UZC81531|]
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cytochrome b, partial (mitochondrion) [Crocidura quasielongata]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-224 5.44e-151

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 424.44  E-value: 5.44e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-224 5.44e-151

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 424.44  E-value: 5.44e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-218 7.73e-57

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 184.99  E-value: 7.73e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPSG----LNSDTDKIPFHPYYTIKDIL 75
Cdd:COG1290   167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  76 GGLIMITTLSSLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALALSILILMIIPLLH 153
Cdd:COG1290   247 GFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2325508966 154 TAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYpfVMIGQLASVIYFLMILLIMPITSMIE 218
Cdd:COG1290   325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 52-199 5.75e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 5.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  52 NPSGLNSDTDKIPFHPYYTIKDILGGLIMITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 131
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2325508966 132 KLGGVLALALSILILMIIPLLHTAKQRSmMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLA 199
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
103-203 5.71e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 129.91  E-value: 5.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966 103 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTW 182
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2325508966 183 IGGQPVEYPFVMIGQLASVIY 203
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 74-136 6.35e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.57  E-value: 6.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966  74 ILGGLIMITTLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 136
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-224 5.44e-151

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 424.44  E-value: 5.44e-151
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00100  156 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLL 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00100  236 ILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSM 315

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00100  316 MFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-224 2.36e-133

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 379.63  E-value: 2.36e-133
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00119  157 IGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLM 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00119  237 LTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSM 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00119  317 TFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-224 4.64e-129

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 368.98  E-value: 4.64e-129
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00131  156 VGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAIL 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00131  236 LLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGL 315

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00131  316 TFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-224 6.44e-126

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 360.92  E-value: 6.44e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00074  157 MGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIM 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00074  237 LTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSL 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLKW 224
Cdd:MTH00074  317 MFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-213 2.41e-117

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 338.43  E-value: 2.41e-117
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00191  153 IGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFIL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00191  233 LFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSN 312

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPI 213
Cdd:MTH00191  313 TFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-222 1.70e-111

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 324.35  E-value: 1.70e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00034  156 IGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLIL 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00034  236 FAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSS 315

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLL 222
Cdd:MTH00034  316 TFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00156
cytochrome b; Provisional
 1-211 4.36e-108

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 314.80  E-value: 4.36e-108
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00156  146 LGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIM 225

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00156  226 LMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGN 305

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIM 211
Cdd:MTH00156  306 QFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00145
cytochrome b; Provisional
 1-222 3.42e-107

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 313.38  E-value: 3.42e-107
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00145  157 VGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVL 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00145  237 LFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSL 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMiLLIMPITSMIENQLL 222
Cdd:MTH00145  317 SFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF-FLILPLVQKLWDNIL 377
CYTB MTH00016
cytochrome b; Validated
 1-223 7.03e-100

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 294.66  E-value: 7.03e-100
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00016  157 IGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVM 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00016  237 LFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGL 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMiLLIMPITSMIENQLLK 223
Cdd:MTH00016  317 SFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFY-FMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-223 1.73e-92

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 276.20  E-value: 1.73e-92
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00053  157 VGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVIL 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00053  237 LIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGL 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLK 223
Cdd:MTH00053  317 SFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-223 1.44e-90

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 271.19  E-value: 1.44e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00022  155 VGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVL 234

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00022  235 FFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGL 314

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIMPITSMIENQLLK 223
Cdd:MTH00022  315 TFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-223 1.10e-86

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 261.39  E-value: 1.10e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00224  157 IGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIA 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSM 160
Cdd:MTH00224  237 ILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSL 316

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 161 MFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMiLLIMPITSMIENQLLK 223
Cdd:MTH00224  317 PFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-219 1.66e-61

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 196.70  E-value: 1.66e-61
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLIM 80
Cdd:MTH00033  153 VGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLIL 232

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  81 ITTLSsLVLFSP---DMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQ 157
Cdd:MTH00033  233 FGVFV-IIGIEPrieTLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKI 311

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966 158 RSMMFRPMSQCMFWILVADLFTLTWIGGQPV-EYPFVMIGQLASVIYFLMILLIMPITSMIEN 219
Cdd:MTH00033  312 RSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-218 7.73e-57

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 184.99  E-value: 7.73e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPSG----LNSDTDKIPFHPYYTIKDIL 75
Cdd:COG1290   167 IGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  76 GGLIMITTLSSLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIP--NKLGGVLALALSILILMIIPLLH 153
Cdd:COG1290   247 GFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLD 324

                         170       180       190       200       210       220
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2325508966 154 TAKQRSMMFRPMSQCMFWILVADLFTLTWIGGQPVEYpfVMIGQLASVIYFLMILLIMPITSMIE 218
Cdd:COG1290   325 RSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
CYTB MTH00086
cytochrome b; Provisional
 2-211 3.06e-55

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 179.75  E-value: 3.06e-55
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   2 GTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGgLIMI 81
Cdd:MTH00086  146 GPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFW 224

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  82 TTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLhtaKQRSMM 161
Cdd:MTH00086  225 LVFIIFSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSC 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2325508966 162 FRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILLIM 211
Cdd:MTH00086  302 LNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 52-199 5.75e-50

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 159.73  E-value: 5.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  52 NPSGLNSDTDKIPFHPYYTIKDILGGLIMITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPN 131
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2325508966 132 KLGGVLALALSILILMIIPLLHTAKQRSmMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLA 199
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
CYTB MTH00046
cytochrome b; Validated
 1-209 1.08e-45

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 155.14  E-value: 1.08e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSNNP-SGLNSDTDKIPFHPYYTIKDILGGLI 79
Cdd:MTH00046  147 VGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMV 226

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966  80 MITTLSSLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIipllhTAKQRS 159
Cdd:MTH00046  227 VCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFFLWV-----PTFNGS 301

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|
gi 2325508966 160 MMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVMIGQLASVIYFLMILL 209
Cdd:MTH00046  302 SVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
103-203 5.71e-39

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 129.91  E-value: 5.71e-39
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966 103 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALALSILILMIIPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTW 182
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2325508966 183 IGGQPVEYPFVMIGQLASVIY 203
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-98 3.87e-22

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 88.84  E-value: 3.87e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHF-ILPFIVAALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGGLI 79
Cdd:pfam13631  71 VGTWLVWLLFGGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLI 150

                          90
                  ....*....|....*....
gi 2325508966  80 MITTLSSLVLFSPDMLGDP 98
Cdd:pfam13631 151 TVALLIGLAQINPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-51 9.92e-18

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 77.79  E-value: 9.92e-18
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|.
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETGSN 51
Cdd:cd00284   150 IGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-49 7.05e-17

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 75.50  E-value: 7.05e-17
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIVAALAGVHLLFLHETG 49
Cdd:pfam00033 141 IGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 74-136 2.33e-09

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 54.41  E-value: 2.33e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966  74 ILGGLIMITTLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 136
Cdd:COG5679    45 ILGTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGI 99
petD CHL00058
cytochrome b6/f complex subunit IV
 74-136 4.46e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 53.47  E-value: 4.46e-09
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966  74 ILGGLIMITTLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 136
Cdd:CHL00058   44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGV 98
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 74-136 6.35e-08

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 50.57  E-value: 6.35e-08
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|...
gi 2325508966  74 ILGGLIMITTLSSLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 136
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGV 98
petB CHL00070
cytochrome b6
 1-54 3.94e-06

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 45.87  E-value: 3.94e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNPS 54
Cdd:CHL00070  161 IGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
PRK03735 PRK03735
cytochrome b6; Provisional
 1-53 8.95e-06

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 45.09  E-value: 8.95e-06
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325508966   1 IGTTLVEWIWGGFSVDKATLTRFFAFH-FILPFIVAALAGVHLLFLHETGSNNP 53
Cdd:PRK03735  169 IGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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