NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2325509216|gb|UZC81656|]
View 

cytochrome b, partial (mitochondrion) [Crocidura levicula]

Protein Classification

cytochrome b( domain architecture ID 999999)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex) that is part of the mitochondrial respiratory chain; contributes to the generation of a proton gradient across the mitochondrial membrane that is then used for ATP synthesis

CATH:  1.20.810.10
Gene Ontology:  GO:0009055|GO:0046872|GO:0022904|GO:0005743|GO:0020037
PubMed:  2509716|8329437
SCOP:  4002208

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB super family cl31797
cytochrome b; Provisional
 1-214 1.03e-143

cytochrome b; Provisional


The actual alignment was detected with superfamily member MTH00100:

Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 405.56  E-value: 1.03e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00100  326 WLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-214 1.03e-143

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 405.56  E-value: 1.03e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00100  326 WLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-208 1.52e-53

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 176.13  E-value: 1.52e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFH-FILPFIVTALAGVHLLFLHETGSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMITTLS 75
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  76 FLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIP--NKLGGVLALILSILILMITPLLHTAKQRSMMFR 153
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2325509216 154 PMSQCMFWILVADLFTLTWIGGQPVEYpfVVIGQLASVIYFLMILLIMPITSMIE 208
Cdd:COG1290   335 PVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 42-189 1.30e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 163.59  E-value: 1.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  42 NPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPN 121
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2325509216 122 KLGGVLALILSILILMITPLLHTAKQRSmMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLA 189
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
93-193 1.89e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 1.89e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  93 PANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTW 172
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2325509216 173 IGGQPVEYPFVVIGQLASVIY 193
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 64-174 6.35e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 6.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  64 ILGALIMITTLSFLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLH 143
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2325509216 144 TAKQRSMMF-RPMSQCMFwiLVADLFTLtWIG 174
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVF--LFGTVVAL-WLG 144
 
Name Accession Description Interval E-value
CYTB MTH00100
cytochrome b; Provisional
 1-214 1.03e-143

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 405.56  E-value: 1.03e-143
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00100  166 GGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLF 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00100  246 SPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFRPLSQCLF 325

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00100  326 WLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFLIILILMPIASLIENNLLKW 379
CYTB MTH00119
cytochrome b; Provisional
 1-214 2.43e-126

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 361.53  E-value: 2.43e-126
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00119  167 GGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00119  247 SPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMPFLHTSKQRSMTFRPLSQLLF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00119  327 WTLVANLLILTWIGSQPVEHPFIIIGQLASILYFTILLILFPLLGALENKMLNY 380
CYTB MTH00131
cytochrome b; Provisional
 1-214 5.07e-122

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 350.49  E-value: 5.07e-122
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00131  166 GGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALF 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00131  246 SPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFRPLTQFLF 325

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00131  326 WTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFSLFLVLMPLAGWLENKALEW 379
CYTB MTH00074
cytochrome b; Provisional
 1-214 1.66e-118

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 341.66  E-value: 1.66e-118
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00074  167 GGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00074  247 SPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIPMLHTSKQRSLMFRPLTQILF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLKW 214
Cdd:MTH00074  327 WLLVANTLILTWIGGQPVEDPFIEIGQAASILYFLLFIIIIPLTGWLENKLLKW 380
CYTB MTH00191
cytochrome b; Provisional
 1-203 1.84e-111

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 323.41  E-value: 1.84e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00191  163 GGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLF 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00191  243 SPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVF 322

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|...
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPI 203
Cdd:MTH00191  323 WLWVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLFPL 365
CYTB MTH00034
cytochrome b; Validated
 1-212 1.63e-105

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 308.56  E-value: 1.63e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00034  166 GGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALL 245

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00034  246 FPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILHTSNNQSSTFRPLSQIAF 325

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLL 212
Cdd:MTH00034  326 WLLIATFFILTWIGSQPVEYPFILLGQVASVLYFSLFLFFFPLISYLENKLI 377
CYTB MTH00145
cytochrome b; Provisional
 1-212 9.74e-102

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 299.13  E-value: 9.74e-102
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00145  167 GGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00145  247 FPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMiLLIMPITSMIENQLL 212
Cdd:MTH00145  327 WIFVGNFFILTWIGACPVEEPYETIGQVFTVLYFLF-FLILPLVQKLWDNIL 377
CYTB MTH00156
cytochrome b; Provisional
 1-201 2.41e-101

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 297.08  E-value: 2.41e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00156  156 GGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLI 235

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00156  236 NPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPINKILF 315

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIM 201
Cdd:MTH00156  316 WIFVNIVILLTWIGARPVEEPYILTGQILTILYFLYFIINP 356
CYTB MTH00016
cytochrome b; Validated
 1-213 9.29e-94

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 278.87  E-value: 9.29e-94
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00016  167 GGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLL 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00016  247 WPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFIFKQKFRGLSFYPLNQILF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMiLLIMPITSMIENQLLK 213
Cdd:MTH00016  327 WLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFFY-FMINPLLMKLWDKLLK 378
CYTB MTH00053
cytochrome b; Provisional
 1-213 1.14e-88

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 265.80  E-value: 1.14e-88
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00053  167 GGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFL 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00053  247 FPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPYLHKSRFRGLSFRPLSKILF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLK 213
Cdd:MTH00053  327 WFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLILMPLAGYLENKLLK 379
CYTB MTH00022
cytochrome b; Validated
 1-213 6.87e-86

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 258.86  E-value: 6.87e-86
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00022  165 GGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYF 244

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00022  245 APNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAF 324

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIMPITSMIENQLLK 213
Cdd:MTH00022  325 WFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVLIPLLGELENQLLF 377
CYTB MTH00224
cytochrome b; Provisional
 1-213 1.37e-81

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 247.91  E-value: 1.37e-81
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00224  167 GGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLF 246

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMF 160
Cdd:MTH00224  247 EPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYPLNQLLF 326

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|...
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMiLLIMPITSMIENQLLK 213
Cdd:MTH00224  327 WLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFSY-FIISPAISKLWDDLLN 378
CYTB MTH00033
cytochrome b; Provisional
 1-209 3.07e-57

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 185.53  E-value: 3.07e-57
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLF 80
Cdd:MTH00033  163 GGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIE 242

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 S--PDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQC 158
Cdd:MTH00033  243 PriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVLLLMPILDRSKIRSLTFNPTGKF 322

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|..
gi 2325509216 159 MFWILVADLFTLTWIGGQPV-EYPFVVIGQLASVIYFLMILLIMPITSMIEN 209
Cdd:MTH00033  323 FFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYFGYFLVLVPLLGYLSN 374
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-208 1.52e-53

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 176.13  E-value: 1.52e-53
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFH-FILPFIVTALAGVHLLFLHETGSNNPSG----LNSDTDKIPFHPYYTIKDILGALIMITTLS 75
Cdd:COG1290   177 GGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  76 FLVLFSPDmlGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIP--NKLGGVLALILSILILMITPLLHTAKQRSMMFR 153
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYR 334

                         170       180       190       200       210
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 2325509216 154 PMSQCMFWILVADLFTLTWIGGQPVEYpfVVIGQLASVIYFLMILLIMPITSMIE 208
Cdd:COG1290   335 PVRTALGVAFIVFFIVLTILGANPPIA--TLLGSINTVTYFAFFLIVLPILAFIE 387
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 42-189 1.30e-51

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 163.59  E-value: 1.30e-51
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  42 NPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVLFSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPN 121
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2325509216 122 KLGGVLALILSILILMITPLLHTAKQRSmMFRPMSQCMFWILVADLFTLTWIGGQPVEYPFVVIGQLA 189
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
CYTB MTH00086
cytochrome b; Provisional
 1-201 6.75e-50

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 165.50  E-value: 6.75e-50
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGaLIMITTLSFLVLF 80
Cdd:MTH00086  155 GGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYN-IIFWLVFIIFSLF 233

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  81 SPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLhtaKQRSMMFRPMSQCMF 160
Cdd:MTH00086  234 YPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFV---NNYTSCLNKLNKFLV 310

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|.
gi 2325509216 161 WILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILLIM 201
Cdd:MTH00086  311 FSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYFFLILLML 351
CYTB MTH00046
cytochrome b; Validated
 1-199 3.95e-45

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 153.21  E-value: 3.95e-45
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSNNP-SGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVL 79
Cdd:MTH00046  157 GGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPlFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWLF 236

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  80 FSPDMLGDPDNYIPANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILIlmitpLLHTAKQRSMMFRPMSQCM 159
Cdd:MTH00046  237 VSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLVLVLSFLFF-----LWVPTFNGSSVYSVWRQVN 311

                         170       180       190       200
                  ....*....|....*....|....*....|....*....|
gi 2325509216 160 FWILVADLFTLTWIGGQPVEYPFVVIGQLASVIYFLMILL 199
Cdd:MTH00046  312 FWLIVSLFFSLSYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
93-193 1.89e-40

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 133.37  E-value: 1.89e-40
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  93 PANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLHTAKQRSMMFRPMSQCMFWILVADLFTLTW 172
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2325509216 173 IGGQPVEYPFVVIGQLASVIY 193
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
1-88 4.02e-16

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 72.66  E-value: 4.02e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216   1 GGFSVDKATLTRFFAFHF-ILPFIVTALAGVHLLFLHETGSNNPSGLNSDTDKIPFHPYYTIKDILGALIMITTLSFLVL 79
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2325509216  80 FSPDMLGDP 88
Cdd:pfam13631 161 INPIWLGGP 169
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-41 3.91e-11

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 59.69  E-value: 3.91e-11
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|.
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETGSN 41
Cdd:cd00284   160 GGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 64-174 1.15e-10

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 57.88  E-value: 1.15e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  64 ILGALIMITTLSFLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLH 143
Cdd:COG5679    45 ILGTIALCIGLAVL---DPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIE 116

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2325509216 144 TAKQRSMMF-RPMSQCMFwiLVADLFTLtWIG 174
Cdd:COG5679   117 NVNKFQNPFrRPVATAVF--LFGTLVTL-WLG 145
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-39 2.12e-10

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 57.78  E-value: 2.12e-10
                          10        20        30
                  ....*....|....*....|....*....|....*....
gi 2325509216   1 GGFSVDKATLTRFFAFHFILPFIVTALAGVHLLFLHETG 39
Cdd:pfam00033 151 GSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
petD CHL00058
cytochrome b6/f complex subunit IV
 64-162 2.23e-09

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 54.24  E-value: 2.23e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  64 ILGALIMITTLSFLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLH 143
Cdd:CHL00058   44 ILGTIACNVGLAVL---EPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLE 115

                          90       100
                  ....*....|....*....|
gi 2325509216 144 TAKQRSMMF-RPMSQCMFWI 162
Cdd:CHL00058  116 NVNKFQNPFrRPVATTVFLI 135
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 64-174 6.35e-09

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 52.88  E-value: 6.35e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2325509216  64 ILGALIMITTLSFLvlfSPDMLGDPdnyipANPLNTPPHIKPEWYFLFAYTILRSIPNKLGGVLALILSILILMITPLLH 143
Cdd:TIGR01156  44 ILGTIACVVGLAVL---DPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIE 115

                          90       100       110
                  ....*....|....*....|....*....|..
gi 2325509216 144 TAKQRSMMF-RPMSQCMFwiLVADLFTLtWIG 174
Cdd:TIGR01156 116 NVNKFQNPFrRPVATTVF--LFGTVVAL-WLG 144
PRK03735 PRK03735
cytochrome b6; Provisional
 1-43 1.38e-03

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 38.54  E-value: 1.38e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....
gi 2325509216   1 GGFSVDKATLTRFFAFH-FILPFIVTALAGVHLLFLHETGSNNP 43
Cdd:PRK03735  179 GGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222
petB CHL00070
cytochrome b6
 1-44 4.43e-03

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 37.01  E-value: 4.43e-03
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 2325509216   1 GGFSVDKATLTRFFAFH-FILPFIVTALAGVHLLFLHETGSNNPS 44
Cdd:CHL00070  171 GSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH