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Conserved domains on  [gi|2337930113|gb|UZT67595|]
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NADH dehydrogenase subunit 3 (mitochondrion) [Saphonecrus sp. ZJUH 20220015]

Protein Classification

NADH dehydrogenase subunit 3( domain architecture ID 10009588)

NADH dehydrogenase subunit 3 is a core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that couples the transfer of electrons from NADH to quinone with the translocation of protons across the membrane

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-114 6.04e-23

NADH dehydrogenase subunit 3; Provisional


:

Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 85.68  E-value: 6.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2337930113  81 MKMKF-FKIKMFFIMITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00148   81 LGSSFsVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-114 6.04e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 85.68  E-value: 6.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2337930113  81 MKMKF-FKIKMFFIMITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00148   81 LGSSFsVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 5.37e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 67.45  E-value: 5.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  19 LYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFKIKMFFIMITI 97
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwAVSFRELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*.
gi 2337930113  98 LLiIGLYYEWKEGSLK 113
Cdd:pfam00507  80 LL-VGLVYAWKKGALE 94
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 16-114 5.43e-14

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 62.83  E-value: 5.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  16 FILLYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFKIKMFFIM 94
Cdd:COG0838    20 LAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwAVVFRELGWFGLIEMLVF 98

                          90       100
                  ....*....|....*....|
gi 2337930113  95 ITILLiIGLYYEWKEGSLKW 114
Cdd:COG0838    99 IAILL-VGLIYAWKKGALEW 117
 
Name Accession Description Interval E-value
ND3 MTH00148
NADH dehydrogenase subunit 3; Provisional
 1-114 6.04e-23

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214433 [Multi-domain]  Cd Length: 117  Bit Score: 85.68  E-value: 6.04e-23
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKI 80
Cdd:MTH00148    1 MLSILLSLLFALILSPVLLLLGLVLSKRSYSDREKSSPFECGFDPISSARSPFSLRFFLLAILFLVFDVEIVLLFPVLQS 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2337930113  81 MKMKF-FKIKMFFIMITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00148   81 LGSSFsVWSLTSLFIFLLILILGLFHEWNEGSLDW 115
ND3 MTH00161
NADH dehydrogenase subunit 3; Provisional
 15-114 3.61e-22

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177217 [Multi-domain]  Cd Length: 113  Bit Score: 83.67  E-value: 3.61e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  15 SFILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFFIM 94
Cdd:MTH00161   13 SIILMILASLLSKKSIMDREKSSPFECGFDPKSSARLPFSLRFFLIAIIFLIFDVEIALLLPMIFIFKTSNMMSWLITSS 92

                          90       100
                  ....*....|....*....|.
gi 2337930113  95 ITIL-LIIGLYYEWKEGSLKW 114
Cdd:MTH00161   93 FFILiLLLGLYYEWNQGALEW 113
ND3 MTH00202
NADH dehydrogenase subunit 3; Provisional
 1-114 8.31e-19

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214455 [Multi-domain]  Cd Length: 117  Bit Score: 75.03  E-value: 8.31e-19
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKI 80
Cdd:MTH00202    1 MLLILFMSILSILISSLLFLVSWMLSFRSLMDREKSSPFECGFDPKESARLPFSMRFFLLAVIFLVFDIEIALLLPLPLV 80

                          90       100       110
                  ....*....|....*....|....*....|....*
gi 2337930113  81 MKMKFFKIKMFFIMI-TILLIIGLYYEWKEGSLKW 114
Cdd:MTH00202   81 LKSSWSKGGLLGGTIfLLILIGGLIHEWKEGSLDW 115
ND3 MTH00012
NADH dehydrogenase subunit 3; Validated
 17-114 4.28e-17

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164588 [Multi-domain]  Cd Length: 117  Bit Score: 71.04  E-value: 4.28e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  17 ILLYLNFFLSKKKFKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMF-FIMI 95
Cdd:MTH00012   17 LVLGAAWVLAARSTADREKTSPFECGFDPHKTARIPFSLRFFLLAIIFIVFDIEIVLLMPVPTILMTSTSKTVVYtSILF 96

                          90
                  ....*....|....*....
gi 2337930113  96 TILLIIGLYYEWKEGSLKW 114
Cdd:MTH00012   97 LLILVIGLIHEWREGSLDW 115
ND3 MTH00069
NADH dehydrogenase subunit 3; Provisional
 35-114 5.93e-17

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177141 [Multi-domain]  Cd Length: 114  Bit Score: 70.41  E-value: 5.93e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFF-IMITILLIIGLYYEWKEGSLK 113
Cdd:MTH00069   32 KLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPTPWASQLNTPTNTLFWsTLILILLTLGLIYEWIQGGLE 111


                  .
gi 2337930113 114 W 114
Cdd:MTH00069  112 W 112
ND3 MTH00113
NADH dehydrogenase subunit 3; Provisional
 15-114 4.13e-16

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177175 [Multi-domain]  Cd Length: 114  Bit Score: 68.37  E-value: 4.13e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  15 SFILLYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFF-I 93
Cdd:MTH00113   14 STILTTLNFWLTQTK-PDNEKLSPYECGFDPLGSARLPFSIRFFLVAILFLLFDLEIALLLPLPWAINLTTPTTTLTWaT 92

                          90       100
                  ....*....|....*....|.
gi 2337930113  94 MITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00113   93 IILTLLTLGLIYEWLQGGLEW 113
Oxidored_q4 pfam00507
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;
19-113 5.37e-16

NADH-ubiquinone/plastoquinone oxidoreductase, chain 3;


Pssm-ID: 459838 [Multi-domain]  Cd Length: 94  Bit Score: 67.45  E-value: 5.37e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  19 LYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFKIKMFFIMITI 97
Cdd:pfam00507   1 LLLSRLLGPKR-PNPEKLSPYECGFDPVGDARLRFSVRFYLVAILFLIFDVEVVFLFPwAVSFRELGWFGFVEMLIFIAI 79

                          90
                  ....*....|....*.
gi 2337930113  98 LLiIGLYYEWKEGSLK 113
Cdd:pfam00507  80 LL-VGLVYAWKKGALE 94
ND3 MTH00136
NADH dehydrogenase subunit 3; Provisional
 35-114 2.16e-15

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177194 [Multi-domain]  Cd Length: 116  Bit Score: 66.48  E-value: 2.16e-15
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPM-----IKIMKMKFFkikmFFIMITILLIIGLYYEWKE 109
Cdd:MTH00136   34 KLSPYECGFDPLGSARLPFSLRFFLVAILFLLFDLEIALLLPLpwgdqLPSPLLTFF----WATAVLILLTLGLIYEWLQ 109


                  ....*
gi 2337930113 110 GSLKW 114
Cdd:MTH00136  110 GGLEW 114
NuoA COG0838
NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH: ...
 16-114 5.43e-14

NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]; NADH:ubiquinone oxidoreductase subunit 3 (chain A) is part of the Pathway/BioSystem: NADH dehydrogenase


Pssm-ID: 440600 [Multi-domain]  Cd Length: 117  Bit Score: 62.83  E-value: 5.43e-14
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  16 FILLYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFKIKMFFIM 94
Cdd:COG0838    20 LAMLLLSRLLGPKR-PNPEKLSPYECGIEPVGDARIRFSVRYYLVALLFVIFDVEVVFLFPwAVVFRELGWFGLIEMLVF 98

                          90       100
                  ....*....|....*....|
gi 2337930113  95 ITILLiIGLYYEWKEGSLKW 114
Cdd:COG0838    99 IAILL-VGLIYAWKKGALEW 117
ND3 MTH00106
NADH dehydrogenase subunit 3; Provisional
 32-114 1.24e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177168 [Multi-domain]  Cd Length: 115  Bit Score: 61.88  E-value: 1.24e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  32 YRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFK--IKMFFIMItILLIIGLYYEWKE 109
Cdd:MTH00106   30 YSEKASPYECGFDPMGSARLPFSMKFFLVAITFLLFDLEIALLLPLPWASQTNNLNtmLTMALLLI-SLLALSLAYEWTQ 108


                  ....*
gi 2337930113 110 GSLKW 114
Cdd:MTH00106  109 KGLEW 113
ND3 MTH00203
NADH dehydrogenase subunit 3; Provisional
 1-114 4.38e-13

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 214456 [Multi-domain]  Cd Length: 112  Bit Score: 60.30  E-value: 4.38e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFKyRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKI 80
Cdd:MTH00203    1 MNLIMLFFLIALLLSLILLFIAFWLPKVNPD-GEKLSPYECGFDPLGSARLPFSLQFFLVALSFLLFDLEIALLLPLPWS 79

                          90       100       110
                  ....*....|....*....|....*....|....
gi 2337930113  81 MKMKFFKIkMFFIMITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00203   80 NQLSSLSL-LLAFLFLILLTLGLIYEWLQGGLEW 112
PRK06602 PRK06602
NADH:ubiquinone oxidoreductase subunit A; Validated
 17-114 4.68e-13

NADH:ubiquinone oxidoreductase subunit A; Validated


Pssm-ID: 180638 [Multi-domain]  Cd Length: 121  Bit Score: 60.65  E-value: 4.68e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  17 ILLYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP---MIKIMKMKFFKIKMFFI 93
Cdd:PRK06602   24 LLLVAGKLLGPRA-PDREKNSPYESGFEAFGDARMKFDVRFYLVAILFVIFDLEAAFLFPwavSFREIGWLGFVEAMIFI 102

                          90       100
                  ....*....|....*....|.
gi 2337930113  94 MItilLIIGLYYEWKEGSLKW 114
Cdd:PRK06602  103 LV---LLVGLVYLWRKGALDW 120
ND3 MTH00042
NADH dehydrogenase subunit 3; Validated
 34-114 4.72e-13

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 177117 [Multi-domain]  Cd Length: 116  Bit Score: 60.38  E-value: 4.72e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  34 NKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMI-KIMKMKFFKIKMFFIMITILLIIGLYYEWKEGSL 112
Cdd:MTH00042   33 EKSSPYECGFDPLNSARLPFSFRFFLVAILFLLFDLEIALLFPLPpATLITNPSTLLPISLIFLIILTIGLVYEWVNGGL 112


                  ..
gi 2337930113 113 KW 114
Cdd:MTH00042  113 EW 114
ND3 MTH00018
NADH dehydrogenase subunit 3; Validated
 15-114 1.10e-11

NADH dehydrogenase subunit 3; Validated


Pssm-ID: 164592 [Multi-domain]  Cd Length: 113  Bit Score: 56.99  E-value: 1.10e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  15 SFILLYLNFFLSKKKfKYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFFIM 94
Cdd:MTH00018   14 SALFSGASYFLGVKQ-PDREKVSAYECGFDPFGFPGRPFSIRFFLIGILFLIFDLEISFLFPWCVLYNQIAPFGFWTMVG 92

                          90       100
                  ....*....|....*....|
gi 2337930113  95 ITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00018   93 FLFILTLGLIYEWIKGGLEW 112
ND3 MTH00055
NADH dehydrogenase subunit 3; Provisional
 35-114 8.56e-11

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177128 [Multi-domain]  Cd Length: 118  Bit Score: 54.72  E-value: 8.56e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFFIMITILLIIGLYYEWKEGSLKW 114
Cdd:MTH00055   38 KVSVYECGFDPFESSRIPFSVRFFLVGILFLIFDLEISFLFPWCVVYNQIGLFGFWVMYLFLIILTIGLIYEWVKGGLEW 117
ND3 MTH00030
NADH dehydrogenase subunit 3; Provisional
 35-114 6.87e-09

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 164603 [Multi-domain]  Cd Length: 123  Bit Score: 49.93  E-value: 6.87e-09
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPM-IKIMKMKFFKIKMFFIMItILLIIGLYYEWKEGSLK 113
Cdd:MTH00030   43 KSSIYECGFDPFGKIRTPFTIKFVLVGILFMIFDIEISFLFPWsIVFNQLNLFSFWIVYTFL-IVLAIGLAYEWIKGGLE 121


                  .
gi 2337930113 114 W 114
Cdd:MTH00030  122 W 122
ndhC CHL00022
NADH dehydrogenase subunit 3
 35-114 8.53e-07

NADH dehydrogenase subunit 3


Pssm-ID: 176964 [Multi-domain]  Cd Length: 120  Bit Score: 44.21  E-value: 8.53e-07
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMikIMKMKFFKIKMF---FIMITIlLIIGLYYEWKEGS 111
Cdd:CHL00022   40 KLSSYESGIEPMGDAWLQFRIRYYMFALVFVVFDVETVFLYPW--AMSFDVLGVSAFieaLIFVLI-LIVGLVYAWRKGA 116


                  ...
gi 2337930113 112 LKW 114
Cdd:CHL00022  117 LEW 119
ND3 MTH00092
NADH dehydrogenase subunit 3; Provisional
 1-116 3.69e-06

NADH dehydrogenase subunit 3; Provisional


Pssm-ID: 177155  Cd Length: 111  Bit Score: 42.19  E-value: 3.69e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113   1 MIHLILINILIIMLSFILLYLNFFLSKKKFkYRNKLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISlifpMIKI 80
Cdd:MTH00092    1 MLVLIFVFLFTLLLLMLLYLLNFFLSVKKF-DLLKVSSFECGFESVGKIQNSFSIHFFKIMLMFVIFDLEIV----MFLG 75

                          90       100       110
                  ....*....|....*....|....*....|....*.
gi 2337930113  81 MKMKFFKIKMFFIMITILLIIGLYYEWKEGSLKWLN 116
Cdd:MTH00092   76 LLVSDFSSLISFFMLMIFIFFGFYMEWWYGKLIWVI 111
PRK07756 PRK07756
NADH-quinone oxidoreductase subunit A;
35-115 3.86e-06

NADH-quinone oxidoreductase subunit A;


Pssm-ID: 169084 [Multi-domain]  Cd Length: 122  Bit Score: 42.42  E-value: 3.86e-06
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  35 KLTSFECGFDNISFMRLPFSINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFKIKMFFIMItILLIIGLYYEWKEGSLK 113
Cdd:PRK07756   42 KATTYESGIEPFHDANIRFHARYYIFALLFVIFDVETLFLYPwAVAYDKLGLFALIEMLIFV-VMLLVGLAYAWKKKVLQ 120


                  ..
gi 2337930113 114 WL 115
Cdd:PRK07756  121 WL 122
PRK07928 PRK07928
NADH dehydrogenase subunit A; Validated
 33-114 1.40e-05

NADH dehydrogenase subunit A; Validated


Pssm-ID: 181171 [Multi-domain]  Cd Length: 119  Bit Score: 41.20  E-value: 1.40e-05
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  33 RNKLTSFECGFD----NISFMRLPfsINFFMISLIFLIFDIEISLIFP-MIKIMKMKFFK-IKMFFIMITILliIGLYYE 106
Cdd:PRK07928   35 RAKLEAYECGIEptpqPAGGGRFP--VKYYLTAMLFIVFDIEIVFLYPwAVSFDALGVFGlVEMALFMLTVF--VAYAYV 110


                  ....*...
gi 2337930113 107 WKEGSLKW 114
Cdd:PRK07928  111 WRRGGLEW 118
PRK08489 PRK08489
NAD(P)H-quinone oxidoreductase subunit 3;
16-114 2.62e-04

NAD(P)H-quinone oxidoreductase subunit 3;


Pssm-ID: 181448 [Multi-domain]  Cd Length: 129  Bit Score: 37.72  E-value: 2.62e-04
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2337930113  16 FILLYLNFFLSKK---KFKYRNKLTSFECGfDNISFMRLPFSINFFMISLIFLIFDIEISLIFPMIKIMKMKFFKIKMFF 92
Cdd:PRK08489   25 FLTTRLARFISRKlaqKNTEKLKLAIYECG-PEPVKQPNRISSHFYIMALLFILFDVEIVFMFPWAVDFKLLGLFGLIEM 103

                          90       100
                  ....*....|....*....|..
gi 2337930113  93 IMITILLIIGLYYEWKEGSLKW 114
Cdd:PRK08489  104 LLFIVLLTIGFIYAWKKGALEW 125
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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