|
Name |
Accession |
Description |
Interval |
E-value |
| DnaX |
COG2812 |
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair]; |
3-308 |
1.59e-86 |
|
DNA polymerase III, gamma/tau subunits [Replication, recombination and repair];
Pssm-ID: 442061 [Multi-domain] Cd Length: 340 Bit Score: 262.82 E-value: 1.59e-86
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLdYENLE-----------------NSPDYVLI 65
Cdd:COG2812 9 FDDVVGQEHVVRTLKNALASGRLAHAYLFTGPRGVGKTTLARILAKALN-CENGPtgepcgecescraiaagSHPDVIEI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 66 KPDGNSIKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDI 144
Cdd:COG2812 88 DAEASNIGVDDIRELIEKVSYAPVEGrYKVYIIDEAHMLTTEAFNALLKTLEEPPPHVVFILATTEPQKLLPTILSRCQR 167
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 145 IKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALNLSQSSEFSMMREDIQQYIQIM---LDKNIVEIL 215
Cdd:COG2812 168 FDFRRLPPEEIAEHLAkiaereGIEIEPEALALIARAADGSMRDALSLLDQAIAFGLLDRRELLLDLLealLAGDVAALL 247
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 216 NIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNF 295
Cdd:COG2812 248 ALAEELAKRGRDLKRFLDDLLSLLRDLLLLKLGPDAELLVNEDERERLQELARRLSPERLLRAIQILLEARRELERNVNP 327
|
330
....*....|...
gi 1578738627 296 NISIQVMSLNIYE 308
Cdd:COG2812 328 RLALEMLLLRLAR 340
|
|
| PRK05564 |
PRK05564 |
DNA polymerase III subunit delta'; Validated |
1-309 |
2.35e-59 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180132 [Multi-domain] Cd Length: 313 Bit Score: 192.55 E-value: 2.35e-59
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSPDYVLIKP-DGNSIKIAQIRN 79
Cdd:PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPiNKKSIGVDDIRN 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 80 LQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRY 158
Cdd:PRK05564 81 IIEEVNKKPYEgDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKF 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 159 LINT--GIEEERAQLLAIFSRGSIENALNLSQSSEFSMMREDIQQYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMI 236
Cdd:PRK05564 161 ISYKynDIKEEEKKSAIAFSDGIPGKVEKFIEDDSLKNIRNMSLEILKDIKKSNINILLKYENFLIKYKENWEEILTCIL 240
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|...
gi 1578738627 237 NYFRDIILLKENVNKNMLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVMSLNIYEV 309
Cdd:PRK05564 241 SYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQEV 313
|
|
| PRK08058 |
PRK08058 |
DNA polymerase III subunit delta'; Validated |
9-309 |
8.28e-56 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181214 [Multi-domain] Cd Length: 329 Bit Score: 183.59 E-value: 8.28e-56
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 9 QDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL--LDYENLE--------------NSPDYVLIKPDGNSI 72
Cdd:PRK08058 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLfcLERNGVEpcgtctnckridsgNHPDVHLVAPDGQSI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 73 KIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIP 151
Cdd:PRK08058 91 KKDQIRYLKEEFSKSGvESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLP 170
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 152 IEDLKRYLINTGIEEERAQLLAIFSrGSIENALNLSQSSEFSMMREDIQQYIQIMLDKNIVEILNIPNNMEKY---RGKI 228
Cdd:PRK08058 171 PESLIQRLQEEGISESLATLLAGLT-NSVEEALALSEDDWFAQARALVIKLYEALHEKDLQSFVFVQEKWMPLfkeKDQQ 249
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 229 IALLDMMINYFRDiiLLKENV-NKNMLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFNISIQVMSLNIY 307
Cdd:PRK08058 250 QLGLDLLLLIYRD--LLYLQLgEEDRLVFREQKEMLQQLALSYSQQQIVAALELILEAKRRLNSNVNFQLVMEQLVLRLQ 327
|
..
gi 1578738627 308 EV 309
Cdd:PRK08058 328 EG 329
|
|
| holB |
TIGR00678 |
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' ... |
13-183 |
1.32e-55 |
|
DNA polymerase III, delta' subunit; This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 273213 [Multi-domain] Cd Length: 188 Bit Score: 178.59 E-value: 1.32e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 13 KKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLL-------DYENLENS---------PDYVLIKPDGNSIKIAQ 76
Cdd:TIGR00678 1 YQQLKRALEKGRLAHAYLFTGPEGVGKELLALALAKALLceqrgggEPCGECHScrlieagnhPDLHRLEPEGQSIKVDQ 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 77 IRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDL 155
Cdd:TIGR00678 81 VRELVEFLSRTPQESgRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQRLPFPPLSEEAL 160
|
170 180
....*....|....*....|....*...
gi 1578738627 156 KRYLINTGIEEERAQLLAIFSRGSIENA 183
Cdd:TIGR00678 161 LQWLIRQGISEEAAELLLALAGGSPGRA 188
|
|
| DNA_pol3_delta2 |
pfam13177 |
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required ... |
8-151 |
7.23e-55 |
|
DNA polymerase III, delta subunit; DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA.
Pssm-ID: 433013 [Multi-domain] Cd Length: 161 Bit Score: 175.86 E-value: 7.23e-55
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 8 GQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDyENLE-----------------NSPDYVLIKPDGN 70
Cdd:pfam13177 1 GQPEAIQLLQNSLENGRLSHAYLFSGPEGVGKLELALAFAKALFC-EEPGddlpcgqcrscrriesgNHPDLVIIEPEGQ 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 71 SIKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSP 149
Cdd:pfam13177 80 SIKIDQIRELQKEFSKSPYEgKKKVYIIEDAEKMTASAANSLLKFLEEPPGNTVIILLTENPSRLLPTIRSRCQIIRFKP 159
|
..
gi 1578738627 150 IP 151
Cdd:pfam13177 160 LS 161
|
|
| HolB |
COG0470 |
DNA polymerase III, delta prime subunit [Replication, recombination and repair]; |
9-306 |
2.22e-53 |
|
DNA polymerase III, delta prime subunit [Replication, recombination and repair];
Pssm-ID: 440238 [Multi-domain] Cd Length: 289 Bit Score: 176.32 E-value: 2.22e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 9 QDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLL--DYENLE-------------NSPDYVLIKPDGNS-- 71
Cdd:COG0470 1 QEEAWEQLLAAAESGRLPHALLLHGPPGIGKTTLALALARDLLceNPEGGKacgqchsrlmaagNHPDLLELNPEEKSdq 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 72 IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPI 150
Cdd:COG0470 81 IGIDQIRELGEFLSLTPLEGgRKVVIIDEADAMNEAAANALLKTLEEPPKNTPFILIANDPSRLLPTIRSRCQVIRFRPP 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 151 PIEDLKRYLINTGIEEERAQLLAIFSRGSIENALNLSQSSEfsmMREDIQQYIQIMLDKN----IVEILNipnnmekyRG 226
Cdd:COG0470 161 SEEEALAWLREEGVDEDALEAILRLAGGDPRAAINLLQALA---GRKELLEDLAALLSRDraleLLDALL--------KA 229
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 227 KIIALLDMMINYFRDIIllkenvnknmlinvdklvfiqnmsgKISYSQ--LSKIIDIIEDAKSKIKSNCNFNISIQVMSL 304
Cdd:COG0470 230 EALELLDWLLKWLLDNL-------------------------PLEYAGedLARAYEALSEADRRLGRYANDRLLLEALLA 284
|
..
gi 1578738627 305 NI 306
Cdd:COG0470 285 KL 286
|
|
| dnaX_nterm |
TIGR02397 |
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ ... |
1-290 |
1.80e-40 |
|
DNA polymerase III, subunit gamma and tau; This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. [DNA metabolism, DNA replication, recombination, and repair]
Pssm-ID: 274111 [Multi-domain] Cd Length: 355 Bit Score: 144.25 E-value: 1.80e-40
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 1 MYFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL-----LDYE-----------NLENSPDyvL 64
Cdd:TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALncqngPDGEpcnecesckeiNSGSSLD--V 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:TIGR02397 89 IEIDAASnNGVDDIREILDNVKYAPSSGkYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRC 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 143 DIIKFSPIPIEDLKRYL--------INtgIEEERAQLLAIFSRGSIENALN-LSQSSEFS---------------MMRED 198
Cdd:TIGR02397 169 QRFDFKRIPLEDIVERLkkildkegIK--IEDEALELIARAADGSLRDALSlLDQLISFGngkityedvnellglVDDEK 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 199 IQQYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKEnVNKNMLINVDK-LVFIQNMSGKISYSQLSK 277
Cdd:TIGR02397 247 LIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKK-TPSNLLAVLESeQEFLKELALKLSLEFLLR 325
|
330
....*....|...
gi 1578738627 278 IIDIIEDAKSKIK 290
Cdd:TIGR02397 326 LLDILLEALKDLR 338
|
|
| PRK07399 |
PRK07399 |
DNA polymerase III subunit delta'; Validated |
3-217 |
8.53e-36 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236011 [Multi-domain] Cd Length: 314 Bit Score: 131.18 E-value: 8.53e-36
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLD----YENLE------NSPDYVLIKPD---- 68
Cdd:PRK07399 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSqgspSKNIRrrleegNHPDLLWVEPTyqhq 82
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 69 GNS------------------IKIAQIRNLqSDIVIRP--HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNyAIIILVT 128
Cdd:PRK07399 83 GKLitaseaeeaglkrkappqIRLEQIREI-KRFLSRPplEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTLILIA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 129 NNKESLLETIKSRCDIIKFSPIPIEDLKRYLINTGIEEERAQ----LLAIfSRGSIENAL-NLSQSSEFSmmrEDIQQYI 203
Cdd:PRK07399 161 PSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILNInfpeLLAL-AQGSPGAAIaNIEQLQSIP---PELLQKL 236
|
250
....*....|....
gi 1578738627 204 QIMLdKNIVEILNI 217
Cdd:PRK07399 237 EQPP-KSPLEALEL 249
|
|
| PRK14953 |
PRK14953 |
DNA polymerase III subunits gamma and tau; Provisional |
3-246 |
7.84e-30 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237867 [Multi-domain] Cd Length: 486 Bit Score: 118.00 E-value: 7.84e-30
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL-----LDYE---NLENS--------PDyvLIK 66
Cdd:PRK14953 15 FKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLnclnpQEGEpcgKCENCveidkgsfPD--LIE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 67 PDGNSIK-IAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDI 144
Cdd:PRK14953 93 IDAASNRgIDDIRALRDAVSYTPIKgKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQR 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 145 IKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALN-LSQSSEFSMMR---------------EDIQQY 202
Cdd:PRK14953 173 FIFSKPTKEQIKEYLKricneeKIEYEEKALDLLAQASEGGMRDAASlLDQASTYGEGKvtikvveeflgivsqESVRKF 252
|
250 260 270 280
....*....|....*....|....*....|....*....|....
gi 1578738627 203 IQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLK 246
Cdd:PRK14953 253 LNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNK 296
|
|
| PRK06647 |
PRK06647 |
DNA polymerase III subunits gamma and tau; Validated |
3-255 |
2.95e-29 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235845 [Multi-domain] Cd Length: 563 Bit Score: 117.18 E-value: 2.95e-29
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL--------------LDYENLENSPDYVLIKPD 68
Cdd:PRK06647 15 FNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLncvngptpmpcgecSSCKSIDNDNSLDVIEID 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 69 GNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIK 146
Cdd:PRK06647 95 GASnTSVQDVRQIKEEIMFPPASSrYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFN 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 147 FSPIPIEDLKRYL------INTGIEEERAQLLAIFSRGSIENALNL-SQSSEFS---MMREDIQQYIQIM----LDKNIV 212
Cdd:PRK06647 175 FRLLSLEKIYNMLkkvcleDQIKYEDEALKWIAYKSTGSVRDAYTLfDQVVSFSdsdITLEQIRSKMGLTgdefLEKLAS 254
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*..
gi 1578738627 213 EILNipnnmeKYRGKIIALLDMM--------------INYFRDIILLKENVNKNMLI 255
Cdd:PRK06647 255 SILN------EDAKELLCVLDSVflsgvsveqflldcIEFFRELLFLKHGIKNEAFI 305
|
|
| PRK05707 |
PRK05707 |
DNA polymerase III subunit delta'; Validated |
28-296 |
5.19e-28 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180215 [Multi-domain] Cd Length: 328 Bit Score: 110.56 E-value: 5.19e-28
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 28 AYMFEGMDGIGKKKFADELSKLLL--DYENLE--------------NSPD-YVLIKPDGN-SIKIAQIRNLQSDIVIRP- 88
Cdd:PRK05707 24 AYLLHGPAGIGKRALAERLAAALLceAPQGGGacgsckgcqllragSHPDnFVLEPEEADkTIKVDQVRELVSFVVQTAq 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 89 HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYL---INTGIE 165
Cdd:PRK05707 104 LGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLqqaLPESDE 183
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 166 EERAQLLAIfSRGSIENALNLsQSSEFsmmREDIQQYIQIMldKNIVEILNIPNNMEKYRGKI--IALLDMMINYFRDII 243
Cdd:PRK05707 184 RERIELLTL-AGGSPLRALQL-HEQGV---REQRARVLDGV--KKLLKQQQSASQLAESWLKVplLLLFDWFCDWAHDIL 256
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|...
gi 1578738627 244 LLKENVNKNMLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSKIKSNCNFN 296
Cdd:PRK05707 257 RYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKVLGKANLN 309
|
|
| PRK14971 |
PRK14971 |
DNA polymerase III subunit gamma/tau; |
3-186 |
8.04e-26 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237874 [Multi-domain] Cd Length: 614 Bit Score: 107.17 E-value: 8.04e-26
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSK------LLLDYE-----------NLENSPD-YVL 64
Cdd:PRK14971 16 FESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKtincqnLTADGEacnecescvafNEQRSYNiHEL 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNSIKiaQIRNLQSDIVIRPH-KDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCD 143
Cdd:PRK14971 96 DAASNNSVD--DIRNLIEQVRIPPQiGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQ 173
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1578738627 144 IIKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALNL 186
Cdd:PRK14971 174 IFDFNRIQVADIVNHLQyvaskeGITAEPEALNVIAQKADGGMRDALSI 222
|
|
| PRK14970 |
PRK14970 |
DNA polymerase III subunits gamma and tau; Provisional |
3-304 |
3.45e-25 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184934 [Multi-domain] Cd Length: 367 Bit Score: 103.42 E-value: 3.45e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL--LDYENLENSPDYVLIKPDGNSIK-IAQIRN 79
Cdd:PRK14970 16 FDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKInqPGYDDPNEDFSFNIFELDAASNNsVDDIRN 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 80 LQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRY 158
Cdd:PRK14970 96 LIDQVRIPPQTgKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEH 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 159 L----INTGI--EEERAQLLAIFSRGSIENALN----LSQSSEFSMMRE---------DIQQYIQIMldkNIVEILNIPN 219
Cdd:PRK14970 176 LagiaVKEGIkfEDDALHIIAQKADGALRDALSifdrVVTFCGKNITRQavtenlnilDYDTYINVT---DLILENKIPE 252
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 220 NMEKYRGKIIALLDM------MINYFRDIILLKENVNKNML---INVDKLVFIQnmSGKISYSQLSKIIDIIEDA--KSK 288
Cdd:PRK14970 253 LLLAFNEILRKGFDGhhfiagLASHFRDLMVSKTPATIALLevgEQAKKRYEVQ--SQKVSQSFLLSGIDIANDCdlKYK 330
|
330
....*....|....*.
gi 1578738627 289 IKSNCNFNISIQVMSL 304
Cdd:PRK14970 331 LSKNQRLLVELALMQL 346
|
|
| PRK09112 |
PRK09112 |
DNA polymerase III subunit delta'; Validated |
6-186 |
5.48e-25 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 169667 [Multi-domain] Cd Length: 351 Bit Score: 102.81 E-value: 5.48e-25
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 6 IIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSPDyVLIKPDGNSIKIAQI-----RNL 80
Cdd:PRK09112 25 LFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE-TLADPDPASPVWRQIaqgahPNL 103
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 81 --------------QSDIVI-----------RPHKD--YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKES 133
Cdd:PRK09112 104 lhitrpfdektgkfKTAITVdeirrvghflsQTSGDgnWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGR 183
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1578738627 134 LLETIKSRCDIIKFSPIPIEDLKRYLINTGI-----EEERAQLLAIfSRGSIENALNL 186
Cdd:PRK09112 184 LLPTIRSRCQPISLKPLDDDELKKALSHLGSsqgsdGEITEALLQR-SKGSVRKALLL 240
|
|
| PRK06305 |
PRK06305 |
DNA polymerase III subunits gamma and tau; Validated |
3-286 |
5.69e-24 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180523 [Multi-domain] Cd Length: 451 Bit Score: 101.00 E-value: 5.69e-24
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLEN-----------------SPDYVLI 65
Cdd:PRK06305 16 FSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDqepcnqcasckeissgtSLDVLEI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 66 kpDGNSIK-IAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCD 143
Cdd:PRK06305 96 --DGASHRgIEDIRQINETVLFTPSKSrYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQ 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 144 IIKFSPIP----IEDLKRYLINTGIEEERAQLLAIFSR--GSIENALNLSQS----SEFSMMREDIQQYIQIM------- 206
Cdd:PRK06305 174 KMHLKRIPeetiIDKLALIAKQEGIETSREALLPIARAaqGSLRDAESLYDYvvglFPKSLDPDSVAKALGLLsqdslyt 253
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 207 LDK-----NIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENvnknmlinvdklVFIQNMSGKISYSQLSKIID- 280
Cdd:PRK06305 254 LDEaittqNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN------------KQLSSVATKYSSEQLLEIIDf 321
|
....*.
gi 1578738627 281 IIEDAK 286
Cdd:PRK06305 322 LGESAK 327
|
|
| PRK14962 |
PRK14962 |
DNA polymerase III subunits gamma and tau; Provisional |
3-279 |
1.51e-23 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237869 [Multi-domain] Cd Length: 472 Bit Score: 100.22 E-value: 1.51e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENSPDYV------------------L 64
Cdd:PRK14962 13 FSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL----NCENRKGVEpcnecracrsidegtfmdV 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNSIK-IAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK14962 89 IELDAASNRgIDEIRKIRDAVGYRPMEgKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRC 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 143 DIIKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALN-LSQSSEFS---------------MMREDIQ 200
Cdd:PRK14962 169 QVIEFRNISDELIIKRLQevaeaeGIEIDREALSFIAKRASGGLRDALTmLEQVWKFSegkitletvhealglIPIEVVR 248
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1578738627 201 QYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMInyfRDIILLKENVNKNMLINVDKLvfIQNMSGKISYSQLSKII 279
Cdd:PRK14962 249 DYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAI---EDLVEDLERERANDIIQVSRQ--LLNILREIKFAEEKRLV 322
|
|
| PRK07276 |
PRK07276 |
DNA polymerase III subunit delta'; Validated |
20-210 |
5.44e-23 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180916 [Multi-domain] Cd Length: 290 Bit Score: 96.24 E-value: 5.44e-23
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 20 IKKNKLNNAYMFEGmdGIGKKKFADELSKLLLdYENLENS-----------------PDYVLIKPDGNSIKIAQIRNL-- 80
Cdd:PRK07276 18 LEQDRLNHAYLFSG--DFASFEMALFLAQSLF-CEQKEGVlpcghcrscrlieqgefSDVTVIEPQGQVIKTDTIRELvk 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 81 ---QSDIvirpHKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFsPIPIEDLKR 157
Cdd:PRK07276 95 nfsQSGY----EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHF-PKNEAYLIQ 169
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1578738627 158 YLINTGIEEERAQLLAIFSRgSIENALNLSQSSEFSMMREDIQQYIQIMLDKN 210
Cdd:PRK07276 170 LLEQKGLLKTQAELLAKLAQ-STSEAEKLAQNKKFLELIDQAERFVTILLKDK 221
|
|
| PRK05563 |
PRK05563 |
DNA polymerase III subunits gamma and tau; Validated |
3-290 |
2.41e-22 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235505 [Multi-domain] Cd Length: 559 Bit Score: 96.86 E-value: 2.41e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGK----KKFADELskllldyeNLENSPD-------YVLIKPDGNS 71
Cdd:PRK05563 15 FEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKtsaaKIFAKAV--------NCLNPPDgepcnecEICKAITNGS 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 72 I------------KIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETI 138
Cdd:PRK05563 87 LmdvieidaasnnGVDEIRDIRDKVKYAPSEaKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATI 166
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 139 KSRCDIIKFSPIPIED----LKRYLINTGIE-EERA-QLLAIFSRGSIENALNL-----SQSSEF-----------SMMR 196
Cdd:PRK05563 167 LSRCQRFDFKRISVEDiverLKYILDKEGIEyEDEAlRLIARAAEGGMRDALSIldqaiSFGDGKvtyedalevtgSVSQ 246
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 197 EDIQQYIQIMLDKNIVEILNIPNNMEKYrGKIIA-LLDMMINYFRDIILLKENVN-KNMLINVDKLVFIQNMSGKISYSQ 274
Cdd:PRK05563 247 EALDDLVDAIVEGDVAKALKILEELLDE-GKDPNrFIEDLIYYLRDLLLVKTSPElEILDESTENDELFKELSEKLDIER 325
|
330
....*....|....*.
gi 1578738627 275 LSKIIDIIEDAKSKIK 290
Cdd:PRK05563 326 LYRMIDILNDAQQQIK 341
|
|
| PRK14955 |
PRK14955 |
DNA polymerase III subunits gamma and tau; Provisional |
3-198 |
6.28e-22 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184919 [Multi-domain] Cd Length: 397 Bit Score: 94.96 E-value: 6.28e-22
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLlDYENLENSPDYV--LIKP-----------DG 69
Cdd:PRK14955 15 FADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDADYLqeVTEPcgecescrdfdAG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 70 NSIKIAQ-----------IRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLET 137
Cdd:PRK14955 94 TSLNISEfdaasnnsvddIRLLRENVRYGPQKGrYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1578738627 138 IKSRCDIIKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALN-LSQSSEFSMMRED 198
Cdd:PRK14955 174 IASRCQRFNFKRIPLEEIQQQLQgiceaeGISVDADALQLIGRKAQGSMRDAQSiLDQVIAFSVESEG 241
|
|
| PRK14960 |
PRK14960 |
DNA polymerase III subunit gamma/tau; |
3-266 |
1.01e-21 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237868 [Multi-domain] Cd Length: 702 Bit Score: 95.50 E-value: 1.01e-21
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSPDYV--------------LIKPD 68
Cdd:PRK14960 14 FNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVcatckavnegrfidLIEID 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 69 GNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIK 146
Cdd:PRK14960 94 AASrTKVEDTRELLDNVPYAPTQGrFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFT 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 147 FSPIPIEDLKRYLiNTGIEEER--AQLLAIF-----SRGSIENALNLSQSS----EFSMMREDIQQYIQiMLDKNIVE-- 213
Cdd:PRK14960 174 LRPLAVDEITKHL-GAILEKEQiaADQDAIWqiaesAQGSLRDALSLTDQAiaygQGAVHHQDVKEMLG-LIDRTIIYdl 251
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1578738627 214 ILNIPNNME----------KYRGKIIAL-LDMMINYFRDIILLK----------ENVNKNMLiNVDKLVFIQNM 266
Cdd:PRK14960 252 ILAVHQNQRekvsqlllqfRYQALDVSLvLDQLISTLHELALLQylpelglkysEEINAKIL-QLSKLISAQDL 324
|
|
| PRK14969 |
PRK14969 |
DNA polymerase III subunits gamma and tau; Provisional |
3-186 |
3.36e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237873 [Multi-domain] Cd Length: 527 Bit Score: 90.58 E-value: 3.36e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLE-----------------NSPDYV-L 64
Cdd:PRK14969 15 FSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL----NCEtgvtatpcgvcsacleiDSGRFVdL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK14969 91 IEVDAASnTQVDAMRELLDNAQYAPTRGrFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRC 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1578738627 143 diIKF------SPIPIEDLKRYLINTGIEEERA--QLLAIFSRGSIENALNL 186
Cdd:PRK14969 171 --LQFnlkqmpPPLIVSHLQHILEQENIPFDATalQLLARAAAGSMRDALSL 220
|
|
| PRK14950 |
PRK14950 |
DNA polymerase III subunits gamma and tau; Provisional |
3-188 |
3.60e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237864 [Multi-domain] Cd Length: 585 Bit Score: 90.64 E-value: 3.60e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENS-----PDYV-------------- 63
Cdd:PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAV----NCTTNdpkgrPCGTcemcraiaegsavd 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 64 LIKPDGNS-IKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSR 141
Cdd:PRK14950 91 VIEMDAAShTSVDDAREIIERVQFRPALaRYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1578738627 142 CDIIKFSPIPIEDLKRYL--INTG----IEEERAQLLAIFSRGSIENALNLSQ 188
Cdd:PRK14950 171 CQRFDFHRHSVADMAAHLrkIAAAeginLEPGALEAIARAATGSMRDAENLLQ 223
|
|
| PRK14965 |
PRK14965 |
DNA polymerase III subunits gamma and tau; Provisional |
3-186 |
4.37e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237871 [Multi-domain] Cd Length: 576 Bit Score: 90.57 E-value: 4.37e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL-----LDYENLENSPDYVLIKpDGNSIKIAQI 77
Cdd:PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALnceqgLTAEPCNVCPPCVEIT-EGRSVDVFEI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 78 -----------RNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDII 145
Cdd:PRK14965 94 dgasntgvddiRELRENVKYLPSRSrYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRF 173
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|.
gi 1578738627 146 KFSPIP---IEDLKRYLintgIEEERAQL----LAIFSR---GSIENALNL 186
Cdd:PRK14965 174 DFRRIPlqkIVDRLRYI----ADQEGISIsdaaLALVARkgdGSMRDSLST 220
|
|
| PRK14954 |
PRK14954 |
DNA polymerase III subunits gamma and tau; Provisional |
3-197 |
6.44e-20 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184918 [Multi-domain] Cd Length: 620 Bit Score: 90.00 E-value: 6.44e-20
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLlDYENLENSPDYV--LIKP-----------DG 69
Cdd:PRK14954 15 FADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV-NCQRMIDDPVYLqeVTEPcgecescrdfdAG 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 70 NSIKIAQ-----------IRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLET 137
Cdd:PRK14954 94 TSLNISEfdaasnnsvddIRQLRENVRYGPQKGrYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPAT 173
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 1578738627 138 IKSRCDIIKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALN-LSQSSEFSMMRE 197
Cdd:PRK14954 174 IASRCQRFNFKRIPLDEIQSQLQmicraeGIQIDADALQLIARKAQGSMRDAQSiLDQVIAFSVGSE 240
|
|
| PRK14959 |
PRK14959 |
DNA polymerase III subunits gamma and tau; Provisional |
3-186 |
1.48e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184923 [Multi-domain] Cd Length: 624 Bit Score: 88.97 E-value: 1.48e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENSP--------------------DY 62
Cdd:PRK14959 15 FAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL----NCETAPtgepcntceqcrkvtqgmhvDV 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 63 VLIkpDGNSIK-IAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKS 140
Cdd:PRK14959 91 VEI--DGASNRgIDDAKRLKEAIGYAPMEGrYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1578738627 141 RCDIIKFSPIPIEDLKRYLINT----GIEEERA--QLLAIFSRGSIENALNL 186
Cdd:PRK14959 169 RCQHFTFTRLSEAGLEAHLTKVlgreGVDYDPAavRLIARRAAGSVRDSMSL 220
|
|
| PRK14956 |
PRK14956 |
DNA polymerase III subunits gamma and tau; Provisional |
2-158 |
2.49e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184920 [Multi-domain] Cd Length: 484 Bit Score: 88.08 E-value: 2.49e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 2 YFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSP----------------DYVLI 65
Cdd:PRK14956 16 FFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPcnectscleitkgissDVLEI 95
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 66 KPDGNSiKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDI 144
Cdd:PRK14956 96 DAASNR-GIENIRELRDNVKFAPMGgKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQD 174
|
170
....*....|....
gi 1578738627 145 IKFSPIPIEDLKRY 158
Cdd:PRK14956 175 FIFKKVPLSVLQDY 188
|
|
| PRK07940 |
PRK07940 |
DNA polymerase III subunit delta'; Validated |
60-183 |
2.72e-19 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236134 [Multi-domain] Cd Length: 394 Bit Score: 87.27 E-value: 2.72e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 60 PDYVLIKPDGNSIKIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETI 138
Cdd:PRK07940 85 PDVRVVAPEGLSIGVDEVRELVTIAARRPsTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTI 164
|
90 100 110 120
....*....|....*....|....*....|....*....|....*.
gi 1578738627 139 KSRCDIIKFSPIPIEDLKRYLI-NTGIEEERAQLLAIFSRGSIENA 183
Cdd:PRK07940 165 RSRCRHVALRTPSVEAVAEVLVrRDGVDPETARRAARASQGHIGRA 210
|
|
| PRK14963 |
PRK14963 |
DNA polymerase III subunits gamma and tau; Provisional |
3-186 |
3.36e-19 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184927 [Multi-domain] Cd Length: 504 Bit Score: 87.59 E-value: 3.36e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFAdelsKLLLDYENLE-------------------NSPDYV 63
Cdd:PRK14963 13 FDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTA----RLIAMAVNCSgedpkpcgecesclavrrgAHPDVL 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 64 LIKPDGNSiKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK14963 89 EIDAASNN-SVEDVRDLREKVLLAPLRgGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRT 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....
gi 1578738627 143 DIIKFspipiedlkRYLINTGIEEERAQLLAIFSRGSIENALNL 186
Cdd:PRK14963 168 QHFRF---------RRLTEEEIAGKLRRLLEAEGREAEPEALQL 202
|
|
| PRK08451 |
PRK08451 |
DNA polymerase III subunits gamma and tau; Validated |
3-255 |
3.59e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236267 [Multi-domain] Cd Length: 535 Bit Score: 87.78 E-value: 3.59e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLdyenLENSPDYV------------------L 64
Cdd:PRK08451 13 FDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALV----CEQGPSSTpcdtciqcqsalenrhidI 88
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNS-IKIAQIRNLQSDIVIRPH-KDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK08451 89 IEMDAASnRGIDDIRELIEQTKYKPSmARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRT 168
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 143 DIIKFSPIP----IEDLKRYLINTGI--EEERAQLLAIFSRGSIENAL------------NLSQSSEFSMM----REDIQ 200
Cdd:PRK08451 169 QHFRFKQIPqnsiISHLKTILEKEGVsyEPEALEILARSGNGSLRDTLtlldqaiiycknAITESKVADMLglldPSKLE 248
|
250 260 270 280 290
....*....|....*....|....*....|....*....|....*....|....*
gi 1578738627 201 QYIQIMLDKNIVEILNIPNNMEKYRGKIIalLDMMINYFRDiILLKENVNKNMLI 255
Cdd:PRK08451 249 DFFQAILNQDKEKLFELLKELEDYEAEMV--LDEMMLFLKE-KFLSKDSEFSILL 300
|
|
| PRK07133 |
PRK07133 |
DNA polymerase III subunits gamma and tau; Validated |
3-311 |
7.76e-19 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235943 [Multi-domain] Cd Length: 725 Bit Score: 86.80 E-value: 7.76e-19
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGK----KKFA---------DELSKLLLDYENLENSPDYVLIKPDG 69
Cdd:PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKtsvaKIFAnalncshktDLLEPCQECIENVNNSLDIIEMDAAS 96
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 70 NSiKIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFS 148
Cdd:PRK07133 97 NN-GVDEIRELIENVKNLPtQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFR 175
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 149 PIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALNLS-QSSEFS---------------MMREDIQQYIQIM 206
Cdd:PRK07133 176 RISEDEIVSRLEfilekeNISYEKNALKLIAKLSSGSLRDALSIAeQVSIFGnnkitlknveelfglVSNENLINLLNLL 255
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 207 LDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDklvFIQNMSGKISYSQLSKIIDIIEDAK 286
Cdd:PRK07133 256 YSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYS---EEDLEKLKIDDDFAYKFIEILFDLL 332
|
330 340
....*....|....*....|....*
gi 1578738627 287 SKIKSNCNFNISIQVMSLNIYEVIK 311
Cdd:PRK07133 333 KDLKISDNPNDTLEILIIKLLALSE 357
|
|
| PRK08691 |
PRK08691 |
DNA polymerase III subunits gamma and tau; Validated |
3-186 |
1.67e-18 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236333 [Multi-domain] Cd Length: 709 Bit Score: 85.92 E-value: 1.67e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLEN-----------------SPDYV-L 64
Cdd:PRK08691 15 FADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL----NCENaqhgepcgvcqsctqidAGRYVdL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNS-IKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK08691 91 LEIDAASnTGIDNIREVLENAQYAPTAgKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRC 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|..
gi 1578738627 143 diIKFS-----PIPIED-LKRYLINTGIEEERA--QLLAIFSRGSIENALNL 186
Cdd:PRK08691 171 --LQFVlrnmtAQQVADhLAHVLDSEKIAYEPPalQLLGRAAAGSMRDALSL 220
|
|
| PRK14958 |
PRK14958 |
DNA polymerase III subunits gamma and tau; Provisional |
3-280 |
2.31e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184922 [Multi-domain] Cd Length: 509 Bit Score: 85.17 E-value: 2.31e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLL-----------DYENLENS-----PDyvLIK 66
Cdd:PRK14958 15 FQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNcekgvsanpcnDCENCREIdegrfPD--LFE 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 67 PDGNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC-- 142
Cdd:PRK14958 93 VDAASrTKVEDTRELLDNIPYAPTKGrFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRClq 172
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 143 -DIIKFSPIPIEDLKRYLI---NTGIEEERAQLLAIFSRGSIENALN-LSQSSEFSMMREDIQQyIQIMLDK-------N 210
Cdd:PRK14958 173 fHLAQLPPLQIAAHCQHLLkeeNVEFENAALDLLARAANGSVRDALSlLDQSIAYGNGKVLIAD-VKTMLGTieplllfD 251
|
250 260 270 280 290 300 310
....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 211 IVEILNIPNNmEKYRGKIIALLDMMINYFRDIILLKENVNKNMLINVDKLVFIQNMSGKIsySQLSKIID 280
Cdd:PRK14958 252 ILEALAAKAG-DRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQL--RQLAKLLD 318
|
|
| PRK14961 |
PRK14961 |
DNA polymerase III subunits gamma and tau; Provisional |
2-296 |
3.72e-18 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184925 [Multi-domain] Cd Length: 363 Bit Score: 83.71 E-value: 3.72e-18
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 2 YFENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL--------------LDYENLENSPDYVLIKP 67
Cdd:PRK14961 14 YFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLncqngitsnpcrkcIICKEIEKGLCLDLIEI 93
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 68 DGNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDII 145
Cdd:PRK14961 94 DAASrTKVEEMREILDNIYYSPSKSrFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 146 KFSPIPIED----LKRYLINTGI--EEERAQLLAIFSRGSIENALNLSQSSeFSMMREDIQQyiqimldKNIVEILNIPN 219
Cdd:PRK14961 174 KLKIISEEKifnfLKYILIKESIdtDEYALKLIAYHAHGSMRDALNLLEHA-INLGKGNINI-------KNVTDMLGLLN 245
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 220 nmEKYrgkIIALLD-----------MMINYFRDIILLKENVnknmLINVDKLVFIQNMSGKISYSQLSKIIDIIEDAKSK 288
Cdd:PRK14961 246 --EKQ---SFLLTDallkkdskktmLLLNKISSIGIEWENI----LIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQK 316
|
....*...
gi 1578738627 289 IKSNCNFN 296
Cdd:PRK14961 317 IAQNNKKT 324
|
|
| PRK06964 |
PRK06964 |
DNA polymerase III subunit delta'; Validated |
24-201 |
4.01e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235898 [Multi-domain] Cd Length: 342 Bit Score: 80.57 E-value: 4.01e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 24 KLNNAYMFEGMDGIGKKKFADELSK-LLLDYENLE----------------NSPDYVLIKPD------------------ 68
Cdd:PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQgLLCETPQPDgepcgtcaacnwfaqgNHPDYRIVRPEalaaeapgaadeakeada 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 69 ----------GNSIKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLET 137
Cdd:PRK06964 99 deggkktkapSKEIKIEQVRALLDFCGVGTHRGgARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPT 178
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1578738627 138 IKSRCDIIKFSPIPIEDLKRYLINTGIEEERAqLLAIFSrGSIENALNLSQSSEFSMMREDIQQ 201
Cdd:PRK06964 179 ILSRCRQFPMTVPAPEAAAAWLAAQGVADADA-LLAEAG-GAPLAALALASDENRPLRDWTLGQ 240
|
|
| PRK08699 |
PRK08699 |
DNA polymerase III subunit delta'; Validated |
24-245 |
4.90e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181538 [Multi-domain] Cd Length: 325 Bit Score: 79.91 E-value: 4.90e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 24 KLNNAYMFEGMDGIGKKKFADELSKLLL-----------------DYENLENSPDYVLIKPDGNS---------IKIAQI 77
Cdd:PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLcetpapghkpcgecmscHLFGQGSHPDFYEITPLSDEpengrkllqIKIDAV 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 78 RNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLK 156
Cdd:PRK08699 99 REIIDNVYLTSVRgGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEAL 178
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 157 RYLINTGIEEERAQLlaIFSRGsienALNLSQSSEFSMMREdiqQYIQIMLDKNIVEILNIPNNMEKYRGKIIALLDMMI 236
Cdd:PRK08699 179 AYLRERGVAEPEERL--AFHSG----APLFDEEPELRALRI---KLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQ 249
|
....*....
gi 1578738627 237 NYFRDIILL 245
Cdd:PRK08699 250 KWLVDLGLC 258
|
|
| PRK07471 |
PRK07471 |
DNA polymerase III subunit delta'; Validated |
96-186 |
6.20e-17 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236022 [Multi-domain] Cd Length: 365 Bit Score: 80.07 E-value: 6.20e-17
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 96 IINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLINTGIE--EERAQLLA 173
Cdd:PRK07471 146 IVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDlpDDPRAALA 225
|
90
....*....|...
gi 1578738627 174 IFSRGSIENALNL 186
Cdd:PRK07471 226 ALAEGSVGRALRL 238
|
|
| PRK05896 |
PRK05896 |
DNA polymerase III subunits gamma and tau; Validated |
3-270 |
1.70e-16 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 235638 [Multi-domain] Cd Length: 605 Bit Score: 79.89 E-value: 1.70e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL----------------LDYENLENSPDYVLIK 66
Cdd:PRK05896 15 FKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAInclnpkdgdccnscsvCESINTNQSVDIVELD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 67 PDGNSiKIAQIRNLQSDIVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDII 145
Cdd:PRK05896 95 AASNN-GVDEIRNIIDNINYLPTTfKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRY 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 146 KFSPIPIEDLKRYLINTG------IEEERAQLLAIFSRGSIENALN-LSQSSEFSMMREDIQ---------------QYI 203
Cdd:PRK05896 174 NFKKLNNSELQELLKSIAkkekikIEDNAIDKIADLADGSLRDGLSiLDQLSTFKNSEIDIEdinktfglvdnnkkiNLI 253
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 1578738627 204 QIMLDKNIVEILNIPNNMEKYRGKIIALLDMMINYFRDIILLKENVNKNML--INVDKLVFIQNMSGKI 270
Cdd:PRK05896 254 ELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLkkLSKEQLKTLNLEKQKL 322
|
|
| PRK14964 |
PRK14964 |
DNA polymerase III subunits gamma and tau; Provisional |
3-186 |
1.96e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237870 [Multi-domain] Cd Length: 491 Bit Score: 79.44 E-value: 1.96e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSkLLLDYEN---------------LENS--PDYVLI 65
Cdd:PRK14964 12 FKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIIS-LCLNCSNgptsdpcgtchncisIKNSnhPDVIEI 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 66 KPDGNSiKIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDI 144
Cdd:PRK14964 91 DAASNT-SVDDIKVILENSCYLPiSSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQR 169
|
170 180 190 200
....*....|....*....|....*....|....*....|....*...
gi 1578738627 145 IKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALNL 186
Cdd:PRK14964 170 FDLQKIPTDKLVEHLVdiakkeNIEHDEESLKLIAENSSGSMRNALFL 217
|
|
| PRK14948 |
PRK14948 |
DNA polymerase III subunit gamma/tau; |
3-178 |
2.34e-16 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237862 [Multi-domain] Cd Length: 620 Bit Score: 79.24 E-value: 2.34e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENSpDYVLIKP-----------DGNS 71
Cdd:PRK14948 15 FDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL----NCLNS-DKPTPEPcgkcelcraiaAGNA 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 72 IKIAQI-----------RNL---------QSdiviRphkdYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNK 131
Cdd:PRK14948 90 LDVIEIdaasntgvdniRELieraqfapvQA----R----WKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 1578738627 132 ESLLETIKSRCDIIKFSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRG 178
Cdd:PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSeiaekeSIEIEPEALTLVAQRSQG 214
|
|
| PRK06090 |
PRK06090 |
DNA polymerase III subunit delta'; Validated |
58-142 |
2.46e-16 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180394 [Multi-domain] Cd Length: 319 Bit Score: 77.92 E-value: 2.46e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 58 NSPDYVLIKPD--GNSIKIAQIRnlQSDIVIRPHKD---YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKE 132
Cdd:PRK06090 72 NHPDLHVIKPEkeGKSITVEQIR--QCNRLAQESSQlngYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQK 149
|
90
....*....|
gi 1578738627 133 SLLETIKSRC 142
Cdd:PRK06090 150 RLLPTIVSRC 159
|
|
| PRK12323 |
PRK12323 |
DNA polymerase III subunit gamma/tau; |
3-187 |
4.68e-16 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 237057 [Multi-domain] Cd Length: 700 Bit Score: 78.38 E-value: 4.68e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL----LDYEN-LENSP----------------D 61
Cdd:PRK12323 15 FTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLnctgADGEGgITAQPcgqcracteidagrfvD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 62 YvlIKPDGNSIK-IAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIK 139
Cdd:PRK12323 95 Y--IEMDAASNRgVDEMAQLLDKAVYAPTAGrFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVL 172
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*.
gi 1578738627 140 SRCdiIKFS----PIP--IEDLKRYLINTGIEEE--RAQLLAIFSRGSIENALNLS 187
Cdd:PRK12323 173 SRC--LQFNlkqmPPGhiVSHLDAILGEEGIAHEvnALRLLAQAAQGSMRDALSLT 226
|
|
| PRK14957 |
PRK14957 |
DNA polymerase III subunits gamma and tau; Provisional |
3-216 |
7.32e-16 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 184921 [Multi-domain] Cd Length: 546 Bit Score: 77.81 E-value: 7.32e-16
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLL-----------DYEN---LENSPDYVLIKPD 68
Cdd:PRK14957 15 FAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNcktgvtaepcnKCENcvaINNNSFIDLIEID 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 69 GNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIK 146
Cdd:PRK14957 95 AASrTGVEETKEILDNIQYMPSQGrYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLH 174
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 147 FSPIPIEDLKRYLI------NTGIEEERAQLLAIFSRGSIENALN-LSQSSEF---SMMREDIQQYIQIMLDKNIVEILN 216
Cdd:PRK14957 175 LKHISQADIKDQLKiilakeNINSDEQSLEYIAYHAKGSLRDALSlLDQAISFcggELKQAQIKQMLGIIDSEEVYSIIN 254
|
|
| PRK14952 |
PRK14952 |
DNA polymerase III subunits gamma/tau; |
3-141 |
8.12e-15 |
|
DNA polymerase III subunits gamma/tau;
Pssm-ID: 237866 [Multi-domain] Cd Length: 584 Bit Score: 74.92 E-value: 8.12e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENSP---------DYVLIKPDGN-SI 72
Cdd:PRK14952 12 FAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSL----NCAQGPtatpcgvceSCVALAPNGPgSI 87
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 73 KIAQI-----------RNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKS 140
Cdd:PRK14952 88 DVVELdaashggvddtRELRDRAFYAPAQSrYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS 167
|
.
gi 1578738627 141 R 141
Cdd:PRK14952 168 R 168
|
|
| PRK05917 |
PRK05917 |
DNA polymerase III subunit delta'; Validated |
16-305 |
6.46e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 102059 [Multi-domain] Cd Length: 290 Bit Score: 70.59 E-value: 6.46e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 16 LTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENS--------PDYVLIKPDG----NSIKIAqiRNLQSD 83
Cdd:PRK05917 9 LIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAykisqkihPDIHEFSPQGkgrlHSIETP--RAIKKQ 86
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 84 IVIRPHK-DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCdiikFSpIPIEDLKRYLINt 162
Cdd:PRK05917 87 IWIHPYEsPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS----LS-IHIPMEEKTLVS- 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 163 giEEERAQLLAIfsrgsienalnlsQSSEFSMMREDIQQYIQIMLDKNIVeilnipnnmekyRGKIIALLDMMINYFRDI 242
Cdd:PRK05917 161 --KEDIAYLIGY-------------AQGKESVTEVGQIVKGSADTDKQVL------------RDKTKAMLEVLLQLFRDR 213
|
250 260 270 280 290 300
....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 1578738627 243 ILLKENVNKNMLINVDKLVFIQNMsgkiSYSQLSKIIDIIEDA-----KSKIKSNCNFNISIQVMSLN 305
Cdd:PRK05917 214 FLLALKVPASALAYPDLLKEILTL----PVLPLEKVLSIIERAvqaldNSSSAPSCLEWVALQLWSLK 277
|
|
| PRK07132 |
PRK07132 |
DNA polymerase III subunit delta'; Validated |
91-311 |
9.85e-14 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180855 [Multi-domain] Cd Length: 299 Bit Score: 70.14 E-value: 9.85e-14
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 91 DYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLINTGIEEERAQ 170
Cdd:PRK07132 90 QKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSKNKEKEYNW 169
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 171 LLA-IFSrgsienalNLSQSSEF-SMMREDIQQYIQIMLDKNIVEILNIPNNMEKYRGKIIA--LLDMMINYFRDIIllk 246
Cdd:PRK07132 170 FYAyIFS--------NFEQAEKYiNKESENLLKKFEEALNKSLKEKYELILFLNKKLTKENAlfLLKLLKFFFKSIF--- 238
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 1578738627 247 eNVNKNMLINVDKLVFIQNMSGKISYSQlskIIDIIEDAKSKIKSNCNFNISIQVMSLNIYEVIK 311
Cdd:PRK07132 239 -ANKKKKNPKNIKVAFSKKKKFKIEFFE---LITIIDEFLNSLETNENFNLQKQAFLVKIYEIYE 299
|
|
| PRK14951 |
PRK14951 |
DNA polymerase III subunits gamma and tau; Provisional |
3-187 |
1.04e-13 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237865 [Multi-domain] Cd Length: 618 Bit Score: 71.28 E-value: 1.04e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENS----------------------- 59
Cdd:PRK14951 15 FSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSL----NCQGPdgqggitatpcgvcqacrdidsg 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 60 --PDYvlIKPDGNSIK-IAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLL 135
Cdd:PRK14951 91 rfVDY--TELDAASNRgVDEVQQLLEQAVYKPvQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVP 168
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1578738627 136 ETIKSRCDIIKFSPIP----IEDLKRYLINTGIEEERA--QLLAIFSRGSIENALNLS 187
Cdd:PRK14951 169 VTVLSRCLQFNLRPMApetvLEHLTQVLAAENVPAEPQalRLLARAARGSMRDALSLT 226
|
|
| PRK07003 |
PRK07003 |
DNA polymerase III subunit gamma/tau; |
3-221 |
5.83e-13 |
|
DNA polymerase III subunit gamma/tau;
Pssm-ID: 235906 [Multi-domain] Cd Length: 830 Bit Score: 69.49 E-value: 5.83e-13
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLLDYENLENSP----------------DYVLIK 66
Cdd:PRK07003 15 FASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPcgvcracreidegrfvDYVEMD 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 67 PDGNSiKIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDII 145
Cdd:PRK07003 95 AASNR-GVDEMAALLERAVYAPvDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQF 173
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 146 KFSPIP----IEDLKRYLINTGI--EEERAQLLAIFSRGSIENALNLS-QSSEFS-----------MMREDIQQYIQIML 207
Cdd:PRK07003 174 NLKQMPaghiVSHLERILGEERIafEPQALRLLARAAQGSMRDALSLTdQAIAYSanevtetavsgMLGALDQTYMVRLL 253
|
250
....*....|....*...
gi 1578738627 208 DK----NIVEILNIPNNM 221
Cdd:PRK07003 254 DAlaagDGPEILAVADEM 271
|
|
| PRK06871 |
PRK06871 |
DNA polymerase III subunit delta'; Validated |
58-155 |
1.44e-12 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 180738 [Multi-domain] Cd Length: 325 Bit Score: 67.07 E-value: 1.44e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 58 NSPDYVLIKP-DGNSIKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLL 135
Cdd:PRK06871 72 NHPDFHILEPiDNKDIGVDQVREINEKVSQHAQQGgNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALL 151
|
90 100
....*....|....*....|
gi 1578738627 136 ETIKSRCDIIKFSPiPIEDL 155
Cdd:PRK06871 152 PTIYSRCQTWLIHP-PEEQQ 170
|
|
| PRK14949 |
PRK14949 |
DNA polymerase III subunits gamma and tau; Provisional |
3-142 |
3.88e-12 |
|
DNA polymerase III subunits gamma and tau; Provisional
Pssm-ID: 237863 [Multi-domain] Cd Length: 944 Bit Score: 66.67 E-value: 3.88e-12
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLEN----SP-------------DYV-L 64
Cdd:PRK14949 15 FEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL----NCEQgvtaTPcgvcsscveiaqgRFVdL 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 65 IKPDGNS-IKIAQIRNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK14949 91 IEVDAASrTKVDDTRELLDNVQYRPSRGrFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRC 170
|
|
| PRK08769 |
PRK08769 |
DNA polymerase III subunit delta'; Validated |
72-205 |
3.01e-11 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181551 [Multi-domain] Cd Length: 319 Bit Score: 63.05 E-value: 3.01e-11
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 72 IKIAQIRNLQSDIVIRPHKDY-KIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPI 150
Cdd:PRK08769 93 IVIEQVREISQKLALTPQYGIaQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLP 172
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*
gi 1578738627 151 PIEDLKRYLINTGIEEERAQLLAIFSRGSIENALNLSQSSEFSMMREDIQQYIQI 205
Cdd:PRK08769 173 PAHEALAWLLAQGVSERAAQEALDAARGHPGLAAQWLREDGLALRRAVAQDLEQI 227
|
|
| PRK06645 |
PRK06645 |
DNA polymerase III subunits gamma and tau; Validated |
3-302 |
1.03e-10 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 180643 [Multi-domain] Cd Length: 507 Bit Score: 62.18 E-value: 1.03e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLL---------------------LDYENlENSPD 61
Cdd:PRK06645 20 FAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVncsalitenttiktceqctncISFNN-HNHPD 98
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 62 YVLIKPdGNSIKIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKS 140
Cdd:PRK06645 99 IIEIDA-ASKTSVDDIRRIIESAEYKPlQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS 177
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 141 RCDIIKFSPIPIEDLKRYLINTGIEE------ERAQLLAIFSRGS-------IENALNLSQSSEFSMMREDIQQYIQIML 207
Cdd:PRK06645 178 RCQRYDLRRLSFEEIFKLLEYITKQEnlktdiEALRIIAYKSEGSardavsiLDQAASMSAKSDNIISPQVINQMLGLVD 257
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 208 DKNIVEILNipNNMEKYRGKIIALLDMMINYFRDIILLKENV-------NK-NMLINVDKLVF------IQNMSGKISYS 273
Cdd:PRK06645 258 SSVIIEFVE--YIIHRETEKAINLINKLYGSSVNLEIFIESVsdfiaylNKvKMLPNYSLPIYesfndrTKSILDKISLP 335
|
330 340
....*....|....*....|....*....
gi 1578738627 274 QLSKIIDIIEDAKSKIKSNCNFNISIQVM 302
Cdd:PRK06645 336 HLSILWQIYNKGVGEIKISYNQLTETEML 364
|
|
| PRK07993 |
PRK07993 |
DNA polymerase III subunit delta'; Validated |
57-280 |
3.43e-10 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 181190 [Multi-domain] Cd Length: 334 Bit Score: 60.08 E-value: 3.43e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 57 ENSPDYVLIKPDG--NSIKIAQIRNLQSdivirphKDY--------KIYIINNAEKMTVEAQNALLKTLEEPPNYAIIIL 126
Cdd:PRK07993 71 GTHPDYYTLTPEKgkSSLGVDAVREVTE-------KLYeharlggaKVVWLPDAALLTDAAANALLKTLEEPPENTWFFL 143
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 127 VTNNKESLLETIKSRCdIIKFSPIPIEDLKRYLINTGIEEERAQLLAI--FSRGSIENALNLSQSSEFSmMREDIQQYIQ 204
Cdd:PRK07993 144 ACREPARLLATLRSRC-RLHYLAPPPEQYALTWLSREVTMSQDALLAAlrLSAGAPGAALALLQPERWQ-QREALCQALA 221
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 205 IMLDK----NIVEILNIPNNMEKYRGKIIALLDMMinyfrdiillKENVNKNMLINVDKLVFIQNMSGKISYSQLSKIID 280
Cdd:PRK07993 222 YALPSgdwlSLLPALNHEQAPARLHWLATLLMDAL----------KRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILG 291
|
|
| PRK12402 |
PRK12402 |
replication factor C small subunit 2; Reviewed |
3-188 |
6.97e-10 |
|
replication factor C small subunit 2; Reviewed
Pssm-ID: 237090 [Multi-domain] Cd Length: 337 Bit Score: 59.23 E-value: 6.97e-10
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNaYMFEGMDGIGKKKFADELSKLLLD--YEN-----------------LENSPDYV 63
Cdd:PRK12402 14 LEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGdpWENnftefnvadffdqgkkyLVEDPRFA 92
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 64 -LIKPDGNSIKiaQIRNLQSDIV-----IRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLE 136
Cdd:PRK12402 93 hFLGTDKRIRS--SKIDNFKHVLkeyasYRPlSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIP 170
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|....*...
gi 1578738627 137 TIKSRCDIIKFSPIP---IED-LKRYLINTGIE--EERAQLLAIFSRGSIENALNLSQ 188
Cdd:PRK12402 171 PIRSRCLPLFFRAPTddeLVDvLESIAEAEGVDydDDGLELIAYYAGGDLRKAILTLQ 228
|
|
| PRK07764 |
PRK07764 |
DNA polymerase III subunits gamma and tau; Validated |
3-159 |
1.07e-09 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236090 [Multi-domain] Cd Length: 824 Bit Score: 59.23 E-value: 1.07e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyeNLENSP---------DYVLIKPDG-NSI 72
Cdd:PRK07764 14 FAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL----NCVEGPtstpcgecdSCVALAPGGpGSL 89
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 73 KIAQI-----------RNLQSDIVIRPHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKS 140
Cdd:PRK07764 90 DVTEIdaashggvddaRELRERAFFAPAESrYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS 169
|
170
....*....|....*....
gi 1578738627 141 RCDIIKFSPIPIEDLKRYL 159
Cdd:PRK07764 170 RTHHYPFRLVPPEVMRGYL 188
|
|
| PRK06581 |
PRK06581 |
DNA polymerase III subunit delta'; Validated |
16-142 |
1.42e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235833 [Multi-domain] Cd Length: 263 Bit Score: 57.55 E-value: 1.42e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 16 LTNSIKKNKLNNAYMFEGMDGIGKKKFADEL--SKLLLDYENLENSPDYVLIKPDGNS------IKIAQIRNLQSDIVIR 87
Cdd:PRK06581 5 LEFNLKHNKLYNSWLIEAENIEQALKDLEKFiyIKLFKNSIPLENNPDYHFIARETSAtsnaknISIEQIRKLQDFLSKT 84
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|....*.
gi 1578738627 88 PHKD-YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK06581 85 SAISgYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC 140
|
|
| rfc |
PRK00440 |
replication factor C small subunit; Reviewed |
3-199 |
2.51e-09 |
|
replication factor C small subunit; Reviewed
Pssm-ID: 234763 [Multi-domain] Cd Length: 319 Bit Score: 57.19 E-value: 2.51e-09
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNaYMFEGMDGIGKKKFADELSKLLL-DY--EN-LE-NSPDYVLIKPDGNSIK-IAQ 76
Cdd:PRK00440 16 LDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYgEDwrENfLElNASDERGIDVIRNKIKeFAR 94
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 77 IRNLqsdivirPHKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLK 156
Cdd:PRK00440 95 TAPV-------GGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVA 167
|
170 180 190 200
....*....|....*....|....*....|....*....|....*....
gi 1578738627 157 RYLI----NTGIEEERAQLLAI--FSRGSIENALNLSQSSefSMMREDI 199
Cdd:PRK00440 168 ERLRyiaeNEGIEITDDALEAIyyVSEGDMRKAINALQAA--AATGKEV 214
|
|
| PRK08485 |
PRK08485 |
DNA polymerase III subunit delta'; Validated |
89-147 |
3.85e-09 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 236274 [Multi-domain] Cd Length: 206 Bit Score: 55.81 E-value: 3.85e-09
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*....
gi 1578738627 89 HKDYKIYIINnAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKF 147
Cdd:PRK08485 53 ESEEKIIVIA-APSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKR 110
|
|
| PRK09111 |
PRK09111 |
DNA polymerase III subunits gamma and tau; Validated |
3-186 |
5.53e-08 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236382 [Multi-domain] Cd Length: 598 Bit Score: 53.75 E-value: 5.53e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 3 FENIIGQDFAKKYLTNSIKKNKLNNAYMFEGMDGIGKKKFADELSKLLldyenlenspDYVLikPDGN---SI------- 72
Cdd:PRK09111 23 FDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARAL----------NYEG--PDGDggpTIdlcgvge 90
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 73 ----------------------KIAQIRNLQSDIVIRP-HKDYKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTN 129
Cdd:PRK09111 91 hcqaimegrhvdvlemdaashtGVDDIREIIESVRYRPvSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170
|
170 180 190 200 210 220
....*....|....*....|....*....|....*....|....*....|....*....|....
gi 1578738627 130 NKESLLETIKSRCDIIKFSPIPIEDLKRYLINT----GIEEErAQLLAIFSR---GSIENALNL 186
Cdd:PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIaakeGVEVE-DEALALIARaaeGSVRDGLSL 233
|
|
| PRK04132 |
PRK04132 |
replication factor C small subunit; Provisional |
92-190 |
6.42e-08 |
|
replication factor C small subunit; Provisional
Pssm-ID: 235223 [Multi-domain] Cd Length: 846 Bit Score: 53.69 E-value: 6.42e-08
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 92 YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIEDLKRYLI----NTGIE-- 165
Cdd:PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRyiaeNEGLElt 710
|
90 100
....*....|....*....|....*
gi 1578738627 166 EERAQLLAIFSRGSIENALNLSQSS 190
Cdd:PRK04132 711 EEGLQAILYIAEGDMRRAINILQAA 735
|
|
| PLN03025 |
PLN03025 |
replication factor C subunit; Provisional |
30-190 |
1.10e-07 |
|
replication factor C subunit; Provisional
Pssm-ID: 178596 [Multi-domain] Cd Length: 319 Bit Score: 52.42 E-value: 1.10e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 30 MFEGMDGIGKKKFADELSKLLL--DYEN--LE-NSPDYVLIKPDGNSIKI-AQIRnlqsdiVIRPHKDYKIYIINNAEKM 103
Cdd:PLN03025 38 ILSGPPGTGKTTSILALAHELLgpNYKEavLElNASDDRGIDVVRNKIKMfAQKK------VTLPPGRHKIVILDEADSM 111
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 104 TVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFSPIPIED-LKRYLINTGIEE-----ERAQLLAIFSR 177
Cdd:PLN03025 112 TSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEiLGRLMKVVEAEKvpyvpEGLEAIIFTAD 191
|
170
....*....|...
gi 1578738627 178 GSIENALNLSQSS 190
Cdd:PLN03025 192 GDMRQALNNLQAT 204
|
|
| PRK07994 |
PRK07994 |
DNA polymerase III subunits gamma and tau; Validated |
92-186 |
5.52e-07 |
|
DNA polymerase III subunits gamma and tau; Validated
Pssm-ID: 236138 [Multi-domain] Cd Length: 647 Bit Score: 51.02 E-value: 5.52e-07
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1578738627 92 YKIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCdiIKFS--PIPIED----LKRYLINTGIE 165
Cdd:PRK07994 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRC--LQFHlkALDVEQirqqLEHILQAEQIP 197
|
90 100
....*....|....*....|...
gi 1578738627 166 -EERA-QLLAIFSRGSIENALNL 186
Cdd:PRK07994 198 fEPRAlQLLARAADGSMRDALSL 220
|
|
| PRK05818 |
PRK05818 |
DNA polymerase III subunit delta'; Validated |
93-142 |
4.38e-06 |
|
DNA polymerase III subunit delta'; Validated
Pssm-ID: 235618 [Multi-domain] Cd Length: 261 Bit Score: 47.13 E-value: 4.38e-06
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|
gi 1578738627 93 KIYIINNAEKMTVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRC 142
Cdd:PRK05818 90 KIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC 139
|
|
| COG1223 |
COG1223 |
Predicted ATPase, AAA+ superfamily [General function prediction only]; |
109-159 |
1.76e-03 |
|
Predicted ATPase, AAA+ superfamily [General function prediction only];
Pssm-ID: 440836 [Multi-domain] Cd Length: 246 Bit Score: 39.10 E-value: 1.76e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|..
gi 1578738627 109 NALLKTLEEPPNYAIIILVTNNKESLLETIKSRCD-IIKFSPIPIEDLKRYL 159
Cdd:COG1223 123 NALLQELDGLPSGSVVIAATNHPELLDSALWRRFDeVIEFPLPDKEERKEIL 174
|
|
| 44 |
PHA02544 |
clamp loader, small subunit; Provisional |
93-148 |
5.78e-03 |
|
clamp loader, small subunit; Provisional
Pssm-ID: 222866 [Multi-domain] Cd Length: 316 Bit Score: 38.05 E-value: 5.78e-03
10 20 30 40 50
....*....|....*....|....*....|....*....|....*....|....*..
gi 1578738627 93 KIYIINNAEKM-TVEAQNALLKTLEEPPNYAIIILVTNNKESLLETIKSRCDIIKFS 148
Cdd:PHA02544 102 KVIIIDEFDRLgLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFG 158
|
|
| |
