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Conserved domains on  [gi|1654222688|emb|VTS41714|]
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membrane protein [Streptococcus equi subsp. zooepidemicus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
DUF1310 super family cl06174
Protein of unknown function (DUF1310); This family consists of several hypothetical proteins ...
 11-126 3.71e-21

Protein of unknown function (DUF1310); This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.


The actual alignment was detected with superfamily member pfam07006:

Pssm-ID: 429243  Cd Length: 116  Bit Score: 81.69  E-value: 3.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654222688  11 IVGVIVIML--GMEVKHRMDiyNQIKQVELKN-AHSKEAIDIYEKKLKRLDPQALTDEGLIRSYTIDSDSLFINPMGGFS 87
Cdd:pfam07006   1 IVLGILVMVifGLGVKFYMD--EEKLNQEMMNvVYSDEAKEVFEKGLKALDAKAFTEKGVIQSYEIDKESIKKNPMGGIN 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1654222688  88 IHLIINDDPDIYLRVGLGRyDLEGNLEIASNYRSEKLEK 126
Cdd:pfam07006  79 VRLIINKDSELYISYTLDR-DNNGELKSGGASISKELTK 116
 
Name Accession Description Interval E-value
DUF1310 pfam07006
Protein of unknown function (DUF1310); This family consists of several hypothetical proteins ...
 11-126 3.71e-21

Protein of unknown function (DUF1310); This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.


Pssm-ID: 429243  Cd Length: 116  Bit Score: 81.69  E-value: 3.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654222688  11 IVGVIVIML--GMEVKHRMDiyNQIKQVELKN-AHSKEAIDIYEKKLKRLDPQALTDEGLIRSYTIDSDSLFINPMGGFS 87
Cdd:pfam07006   1 IVLGILVMVifGLGVKFYMD--EEKLNQEMMNvVYSDEAKEVFEKGLKALDAKAFTEKGVIQSYEIDKESIKKNPMGGIN 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1654222688  88 IHLIINDDPDIYLRVGLGRyDLEGNLEIASNYRSEKLEK 126
Cdd:pfam07006  79 VRLIINKDSELYISYTLDR-DNNGELKSGGASISKELTK 116
 
Name Accession Description Interval E-value
DUF1310 pfam07006
Protein of unknown function (DUF1310); This family consists of several hypothetical proteins ...
 11-126 3.71e-21

Protein of unknown function (DUF1310); This family consists of several hypothetical proteins of around 125 residues in length. Members of this family seem to be specific to Listeria and Streptococcus species. The function of this family is unknown.


Pssm-ID: 429243  Cd Length: 116  Bit Score: 81.69  E-value: 3.71e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 1654222688  11 IVGVIVIML--GMEVKHRMDiyNQIKQVELKN-AHSKEAIDIYEKKLKRLDPQALTDEGLIRSYTIDSDSLFINPMGGFS 87
Cdd:pfam07006   1 IVLGILVMVifGLGVKFYMD--EEKLNQEMMNvVYSDEAKEVFEKGLKALDAKAFTEKGVIQSYEIDKESIKKNPMGGIN 78

                          90       100       110
                  ....*....|....*....|....*....|....*....
gi 1654222688  88 IHLIINDDPDIYLRVGLGRyDLEGNLEIASNYRSEKLEK 126
Cdd:pfam07006  79 VRLIINKDSELYISYTLDR-DNNGELKSGGASISKELTK 116
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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