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Conserved domains on  [gi|2431426221|gb|WCB57069|]
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cytochrome b, partial (mitochondrion) [Pipra filicauda]

Protein Classification

cytochrome b( domain architecture ID 11475906)

cytochrome b is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), a respiratory chain that generates an electrochemical potential coupled to ATP synthesis

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 633.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00119   53 AMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00119  133 VLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00119  213 NSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00119  293 LALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 633.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00119   53 AMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00119  133 VLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00119  213 NSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00119  293 LALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-308 1.01e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.06  E-value: 1.01e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYlyKE----TWNTGIILLLTLMATA 76
Cdd:COG1290    61 TMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  77 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGLTFIHLTFLHETGSN 155
Cdd:COG1290   139 FTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHN 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 156 NPLGI----HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 231
Cdd:COG1290   219 NPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILR 296

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 232 SIP--NKLGGVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVehPFIIIGQLASATYF 308
Cdd:COG1290   297 AIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-155 2.01e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 229.56  E-value: 2.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSY--LYKETWNTGIILLLTLMATAFV 78
Cdd:cd00284    44 AMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFM 123

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2431426221  79 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSN 155
Cdd:cd00284   124 GYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-153 2.48e-65

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.38  E-value: 2.48e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYG--SYLYKETWNTGIILLLTLMATAFV 78
Cdd:pfam00033  35 AFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431426221  79 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETG 153
Cdd:pfam00033 115 GYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-288 1.80e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.35  E-value: 1.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 191 LAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTFRPL 269
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90
                  ....*....|....*....
gi 2431426221 270 SQLLFWIlvtNLLILTWIG 288
Cdd:TIGR01156 129 ATTVFLF---GTVVALWLG 144
 
Name Accession Description Interval E-value
CYTB MTH00119
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 633.09  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00119   53 AMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLHIGRGLYYGSYLYKETWNTGVILLLLLMATAFVGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00119  133 VLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTRFFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00119  213 NSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00119  293 LALAASILILFLMPFLHTSKQRSMTFRPLSQLLFWTLVANLLILTWIGSQPVEHPFIIIGQLASILYFT 361
CYTB MTH00131
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 578.91  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00131   52 AMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLHIGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGY 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00131  132 VLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTRFFAFHFLFPFVIAAATILHLLFLHETGSNNPLGL 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00131  212 NSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 291

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00131  292 LALLFSILVLMVVPILHTSKQRGLTFRPLTQFLFWTLVADVLILTWIGGMPVEHPFIIIGQVASVLYFS 360
CYTB MTH00100
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 571.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00100   52 AMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLHVGRGLYYGSYLFLETWNIGIILLFTVMATAFMGY 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00100  132 VLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTRFFAFHFILPFIITALAMVHLLFLHETGSNNPSGI 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00100  212 PSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYTPANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGV 291

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00100  292 LALLLSILILAIIPLLHTSKQRSMMFRPLSQCLFWLLVADLLTLTWIGGQPVEHPFIIIGQLASILYFL 360
CYTB MTH00074
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 552.75  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00074   53 AMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLHIGRGLYYGSYMYKETWNIGVILLFLVMATAFVGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00074  133 VLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTRFFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00074  213 NSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFTPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00074  293 LALLASILILMLIPMLHTSKQRSLMFRPLTQILFWLLVANTLILTWIGGQPVEDPFIEIGQAASILYFL 361
CYTB MTH00191
cytochrome b; Provisional
 1-309 0e+00

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 542.97  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00191   49 AMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGASFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGY 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00191  129 VLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGGFSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGL 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00191  209 NSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSPNLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 288

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00191  289 LALVMSILVLFLLPLLHTSKQRSNTFRPLTQVVFWLWVANFILLTWLGGQPVEDPFILLGQISSFLYFF 357
CYTB MTH00156
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 538.21  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00156   42 AMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFICIYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGY 121

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00156  122 VLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNATLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGL 201

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00156  202 NSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDPENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 281

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00156  282 IALVMSILILMILPFTNKSKFRGNQFYPINKILFWIFVNIVILLTWIGARPVEEPYILTGQILTILYF 349
CYTB MTH00145
cytochrome b; Provisional
 1-308 0e+00

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 517.54  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00145   53 SMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLHIGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00145  133 VLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKRFFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGL 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00145  213 DSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFIPANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00145  293 IALVMSIVILFFLPLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTWIGACPVEEPYETIGQVFTVLYF 360
CYTB MTH00034
cytochrome b; Validated
 1-308 0e+00

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 505.40  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00034   52 AMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFHIGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGY 131

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00034  132 VLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTRFFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGL 211

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00034  212 NSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFIPANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGV 291

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00034  292 IALVAAILVLFLVPILHTSNNQSSTFRPLSQIAFWLLIATFFILTWIGSQPVEYPFILLGQVASVLYF 359
CYTB MTH00016
cytochrome b; Validated
 1-309 5.01e-175

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 489.19  E-value: 5.01e-175
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00016   53 SMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYLHIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00016  133 VLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLTRFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGV 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00016  213 NSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENFIPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00016  293 VAMFASILILFFLPFIFKQKFRGLSFYPLNQILFWLLVSNFLLLTWIGGRPVEPPYEFLGQIFTVFYFF 361
CYTB MTH00053
cytochrome b; Provisional
 1-308 1.14e-155

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 440.30  E-value: 1.14e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00053   53 AMHYCADVNLAFSSVAHITRDVNYGFILRYLHANGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00053  133 VLPWGQMSFWAATVITNLLSAIPYVGDDIVRWVWGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGV 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00053  213 RSDIDKIPFHYYYVLKDLYGAVILLIILSIIVFLFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00053  293 VALVFSILVLFFLPYLHKSRFRGLSFRPLSKILFWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYF 360
CYTB MTH00022
cytochrome b; Validated
 1-308 2.83e-153

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 434.13  E-value: 2.83e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00022   51 SMHYCSDVSLAFASVGHIMRDVNYGFLLRYLHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGY 130

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00022  131 VLPWGQMSFWGATVITNLLSAIPYVGTDIVQWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGL 210

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00022  211 NSSVDKVSFHVYYTSKDWYGIVVLFFLLSFIVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGV 290

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00022  291 VAMFFSILILFFLPLLHTSWLRGLTFRPLGRMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYF 358
CYTB MTH00224
cytochrome b; Provisional
 1-309 1.06e-149

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 425.10  E-value: 1.06e-149
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00224   53 SMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLHVGRGLYYGSFNLSETWNIGVILFILTMATAFLGY 132

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00224  133 VLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNRFFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGI 212

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00224  213 NADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFLMANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGV 292

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 241 LALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYFT 309
Cdd:MTH00224  293 VALFAAILILFILPLTSVMNKRSLPFYPLNQLLFWLLVTSWAILTWIGGRPVEDPFEGIGQVFTILYFS 361
CYTB MTH00033
cytochrome b; Provisional
 1-308 4.97e-115

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 336.91  E-value: 4.97e-115
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00033   49 AMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCHIGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGY 128

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00033  129 VLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNRFFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGL 208

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFS--PNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLG 238
Cdd:MTH00033  209 VGLSDRTAFHVYFTIKDILGFLILFGVFVIIGIEPriETLLQDPENFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLG 288

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|.
gi 2431426221 239 GVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPV-EHPFIIIGQLASATYF 308
Cdd:MTH00033  289 GVLALFASILVLLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFIILTWIGSAPAgADPYVLIGRIATIFYF 359
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
1-308 1.01e-111

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 329.06  E-value: 1.01e-111
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYlyKE----TWNTGIILLLTLMATA 76
Cdd:COG1290    61 TMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLFFAAVYLHMFRGFFYGAY--KKprelNWIIGVLLLLLTMAEA 138

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  77 FVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGLTFIHLTFLHETGSN 155
Cdd:COG1290   139 FTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLFGGEFPGDATLNRFFALHvLLLPALLLALVVLHLWLLHRHGHN 218

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 156 NPLGI----HSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNllGDPENFTPANPLVTPPHIKPEWYFLFAYAILR 231
Cdd:COG1290   219 NPPGPerkkTEKVDGVPFHPYYTVKDGFGFFVFLGVFALLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILR 296

                         250       260       270       280       290       300       310
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221 232 SIP--NKLGGVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVehPFIIIGQLASATYF 308
Cdd:COG1290   297 AIPgsAKLGGVIAMGLAILVLFLLPFLDRSPVRSPRYRPVRTALGVAFIVFFIVLTILGANPP--IATLLGSINTVTYF 373
CYTB MTH00086
cytochrome b; Provisional
 1-308 3.13e-104

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 308.41  E-value: 3.13e-104
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGY 80
Cdd:MTH00086   41 AFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYLHIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGY 120

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI 160
Cdd:MTH00086  121 VLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLKFFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYC 200

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 161 HSDCDKIPFHPYFSVKDILGLLFLLIPLMtLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGV 240
Cdd:MTH00086  201 HGDYDKICFGPEYWNKDAYNIIFWLVFII-FSLFYPFNLGDPEMFIEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGV 279

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 241 LALAASVLILFLTPFLhmsKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLASATYF 308
Cdd:MTH00086  280 IALLMSIVVFYFFIFV---NNYTSCLNKLNKFLVFSFIVVNVILSWLGQCLVEYPFLFLSQIFSFIYF 344
CYTB MTH00046
cytochrome b; Validated
 4-304 1.56e-80

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 247.97  E-value: 1.56e-80
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   4 YTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKETWNTGIILLLTLMATAFVGYVLP 83
Cdd:MTH00046   46 YVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIHMGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILP 125

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  84 WGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSNNPLGI-HS 162
Cdd:MTH00046  126 WHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVRVFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSsNG 205

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 163 DCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGvLA 242
Cdd:MTH00046  206 YSDVVYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIEAYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGG-LV 284

                         250       260       270       280       290       300
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 2431426221 243 LAASVLILFLTPflhmSKQRTMTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLAS 304
Cdd:MTH00046  285 LVLSFLFFLWVP----TFNGSSVYSVWRQVNFWLIVSLFFSLSYLGGCHPEYPYLLISQLFS 342
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 1-155 2.01e-75

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 229.56  E-value: 2.01e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSY--LYKETWNTGIILLLTLMATAFV 78
Cdd:cd00284    44 AMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLHIFRGLYYGSYkkPRELTWVIGVILLLLTMATAFM 123

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2431426221  79 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETGSN 155
Cdd:cd00284   124 GYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATLTRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
1-153 2.48e-65

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 203.38  E-value: 2.48e-65
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYG--SYLYKETWNTGIILLLTLMATAFV 78
Cdd:pfam00033  35 AFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLHIFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFI 114

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*
gi 2431426221  79 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALHFLLPFLIAGLTFIHLTFLHETG 153
Cdd:pfam00033 115 GYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATLTRFFSLHFLLPFILAILMLLHLLFLHETG 189
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 156-303 1.78e-56

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 179.38  E-value: 1.78e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 156 NPLGIHSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAMFSPNLLGDPENFTPANPLVTPPHIKPEWYFLFAYAILRSIPN 235
Cdd:cd00290     1 NPLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPN 80

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*...
gi 2431426221 236 KLGGVLALAASVLILFLTPFLHMSKQRTmTFRPLSQLLFWILVTNLLILTWIGSQPVEHPFIIIGQLA 303
Cdd:cd00290    81 KLLGVLAMAASILSLFLVPFLENSNKRS-QFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQLF 147
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
207-307 7.97e-49

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 158.03  E-value: 7.97e-49
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 207 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFLHMSKQRTMTFRPLSQLLFWILVTNLLILTW 286
Cdd:pfam00032   1 PANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPWLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGW 80

                          90       100
                  ....*....|....*....|.
gi 2431426221 287 IGSQPVEHPFIIIGQLASATY 307
Cdd:pfam00032  81 LGKQPPTGPYTLLGQIATVYY 101
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
37-202 1.81e-43

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 146.62  E-value: 1.81e-43
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  37 SFFFMCIYLHIGRGFYYGSYLYKE--TWNTGIILLLTLMATAFVGYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAW 114
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 115 GGFSVDNPTLTRFFALHF-LLPFLIAGLTFIHLTFLHETGSNNPLGIHSDCDKIPFHPYFSVKDILGLLFLLIPLMTLAM 193
Cdd:pfam13631  81 GGPFPGTATIPRFYALHIlLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*....
gi 2431426221 194 FSPNLLGDP 202
Cdd:pfam13631 161 INPIWLGGP 169
PRK03735 PRK03735
cytochrome b6; Provisional
 1-158 6.38e-31

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 115.58  E-value: 6.38e-31
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   1 AMHYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKE--TWNTGIILLLTLMATAFV 78
Cdd:PRK03735   63 TMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRelNWVVGVLIFFVTVGLGFT 142

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221  79 GYVLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGLTFIHLTFLHETGSNNP 157
Cdd:PRK03735  143 GYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTRFFAIHvFFLPWALAVLMLAHFLMIRKQGISGP 222


                  .
gi 2431426221 158 L 158
Cdd:PRK03735  223 L 223
petB CHL00070
cytochrome b6
 3-158 9.00e-29

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 109.81  E-value: 9.00e-29
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221   3 HYTADITLAFTSVAHTCRNVQFGWLIRNLHANGASFFFMCIYLHIGRGFYYGSYLYKE--TWNTGIILLLTLMATAFVGY 80
Cdd:CHL00070   57 YYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRelTWVTGVVLAVLTVSFGVTGY 136

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 2431426221  81 VLPWGQMSFWGATVITNLFSAIPYIGQTLVEWAWGGFSVDNPTLTRFFALH-FLLPFLIAGLTFIHLTFLHETGSNNPL 158
Cdd:CHL00070  137 SLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYSLHtFVLPLLTAVFMLMHFLMIRKQGISGPL 215
petD CHL00058
cytochrome b6/f complex subunit IV
 191-276 1.97e-13

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 66.95  E-value: 1.97e-13
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 191 LAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTFRPL 269
Cdd:CHL00058   54 LAVLEPSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMASVPAGLLTVPFLeNVNKFQNPFRRPV 128


                  ....*..
gi 2431426221 270 SQLLFWI 276
Cdd:CHL00058  129 ATTVFLI 135
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 191-288 3.18e-12

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 63.66  E-value: 3.18e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 191 LAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTFRPL 269
Cdd:COG5679    55 LAVLDPAMMGEP-----ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMAAIPLGLMLVPFIeNVNKFQNPFRRPV 129

                          90
                  ....*....|....*....
gi 2431426221 270 SQLLFWIlvtNLLILTWIG 288
Cdd:COG5679   130 ATAVFLF---GTLVTLWLG 145
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 191-288 1.80e-11

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 61.35  E-value: 1.80e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2431426221 191 LAMFSPNLLGDPenftpANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASVLILFLTPFL-HMSKQRTMTFRPL 269
Cdd:TIGR01156  54 LAVLDPAMIGEP-----ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAAVPAGLLTVPFIeNVNKFQNPFRRPV 128

                          90
                  ....*....|....*....
gi 2431426221 270 SQLLFWIlvtNLLILTWIG 288
Cdd:TIGR01156 129 ATTVFLF---GTVVALWLG 144
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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